Regulog TyrR - Shewanellaceae
| Regulator type: | Transcription factor |
| Regulator family: | TyrR |
| Regulation mode: | activator |
| Biological process: | Amino acid utilization |
| Effector: | Tyrosine; Phenylalanine |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - TyrR
- By TF family - TyrR
- By effector - Tyrosine
- By effector - Phenylalanine
- By pathway - Amino acid utilization
| Genome | Genes | Operons |
|---|---|---|
| Shewanella oneidensis MR-1 | 36 | 17 |
| Shewanella putrefaciens CN-32 | 38 | 19 |
| Shewanella sp W3-18-1 | 38 | 19 |
| Shewanella sp ANA-3 | 37 | 18 |
| Shewanella sp MR-4 | 37 | 18 |
| Shewanella sp MR-7 | 37 | 18 |
| Shewanella baltica OS155 | 38 | 19 |
| Shewanella denitrificans OS217 | 38 | 18 |
| Shewanella frigidimarina NCIMB 400 | 34 | 15 |
| Shewanella amazonensis SB2B | 37 | 18 |
| Shewanella loihica PV-4 | 27 | 15 |
| Shewanella pealeana ATCC 700345 | 34 | 16 |
| Shewanella halifaxensis HAW-EB4 | 33 | 14 |
| Shewanella piezotolerans WP3 | 33 | 16 |
| Shewanella sediminis HAW-EB3 | 27 | 15 |
| Shewanella woodyi ATCC 51908 | 34 | 17 |
| Genes | Function | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||||
| ldh |
*
Shewanella oneidensis MR-1 Site: position = -154 score = 5.15681 sequence = GTGGAAAGCTAGATTGCCAC Gene: SO_2638: Leucine dehydrogenase (EC 1.4.1.9) |
*
Shewanella putrefaciens CN-32 Site: position = -155 score = 5.15189 sequence = GTGGAAAGCTAAATTGCCAC Gene: Sputcn32_2238: Leucine dehydrogenase (EC 1.4.1.9) |
*
Shewanella sp W3-18-1 Site: position = -155 score = 5.15189 sequence = GTGGAAAGCTAAATTGCCAC Gene: Sputw3181_1771: Leucine dehydrogenase (EC 1.4.1.9) |
*
Shewanella sp ANA-3 Site: position = -154 score = 5.15681 sequence = GTGGAAAGCTAGATTGCCAC Gene: Shewana3_1742: Leucine dehydrogenase (EC 1.4.1.9) |
*
Shewanella sp MR-4 Site: position = -154 score = 5.15681 sequence = GTGGAAAGCTAGATTGCCAC Gene: Shewmr4_1598: Leucine dehydrogenase (EC 1.4.1.9) |
*
Shewanella sp MR-7 Site: position = -154 score = 5.15681 sequence = GTGGAAAGCTAGATTGCCAC Gene: Shewmr7_1673: Leucine dehydrogenase (EC 1.4.1.9) |
*
Shewanella baltica OS155 Site: position = -134 score = 5.15189 sequence = GTGGAAAGCTAAATTGCCAC Gene: Sbal_2483: Leucine dehydrogenase (EC 1.4.1.9) |
*
Shewanella denitrificans OS217 Site: position = -140 score = 4.94699 sequence = GTGGCAAGCAAAATTGCCAC Gene: Sden_1823: Leucine dehydrogenase (EC 1.4.1.9) |
*
Shewanella frigidimarina NCIMB 400 Site: position = -178 score = 5.15189 sequence = GTGGCAAGCTAAATTTCCAC Gene: Sfri_2265: Leucine dehydrogenase (EC 1.4.1.9) |
*
Shewanella amazonensis SB2B Site: position = -147 score = 5.08486 sequence = GTGGAAAGCAAAATTGCCAC Gene: Sama_2067: Leucine dehydrogenase (EC 1.4.1.9) |
*
Shewanella loihica PV-4 Site: position = -157 score = 5.08486 sequence = GTGGAAAGCAAAATTGCCAC Gene: Shew_1555: Leucine dehydrogenase (EC 1.4.1.9) |
*
Shewanella pealeana ATCC 700345 Site: position = -157 score = 4.86359 sequence = GTGGAAAGCAAAATTGCCAG Gene: Spea_2543: Leucine dehydrogenase (EC 1.4.1.9) |
*
Shewanella halifaxensis HAW-EB4 Site: position = -157 score = 4.86359 sequence = GTGGAAAGCAAAATTGCCAG Gene: Shal_1711: Leucine dehydrogenase (EC 1.4.1.9) |
*
Shewanella piezotolerans WP3 Site: position = -158 score = 4.84402 sequence = GTGGAAAGCAGAATTGCCAC Gene: swp_1857: Leucine dehydrogenase (EC 1.4.1.9) |
*
Shewanella sediminis HAW-EB3 Site: position = -156 score = 5.15189 sequence = GTGGAAAGCTAAATTGCCAC Gene: Ssed_1877: Leucine dehydrogenase (EC 1.4.1.9) |
*
Shewanella woodyi ATCC 51908 Site: position = -157 score = 5.08486 sequence = GTGGAAAGCAAAATTGCCAC Gene: Swoo_2710: Leucine dehydrogenase (EC 1.4.1.9) |
Leucine dehydrogenase (EC 1.4.1.9) |
| CRON 2. | |||||||||||||||||
| mdeA |
*
Shewanella oneidensis MR-1 Site: position = -197 score = 3.94725 sequence = ATGTAACAACTTAGTTACAG Gene: SO_1812: Methionine gamma-lyase (EC 4.4.1.11) |
*
Shewanella putrefaciens CN-32 Site: position = -210 score = 4.10269 sequence = ATGTAACAAGTTAATTACAC Gene: Sputcn32_1507: Methionine gamma-lyase (EC 4.4.1.11) |
*
Shewanella sp W3-18-1 Site: position = -210 score = 4.10269 sequence = ATGTAACAAGTTAATTACAC Gene: Sputw3181_2594: Methionine gamma-lyase (EC 4.4.1.11) |
*
Shewanella sp ANA-3 Site: position = -208 score = 3.94725 sequence = ATGTAACAACTTAGTTACAG Gene: Shewana3_2643: Methionine gamma-lyase (EC 4.4.1.11) |
*
Shewanella sp MR-4 Site: position = -208 score = 3.94725 sequence = ATGTAACAACTTAGTTACAG Gene: Shewmr4_2477: Methionine gamma-lyase (EC 4.4.1.11) |
*
Shewanella sp MR-7 Site: position = -208 score = 3.94725 sequence = ATGTAACAACTTAGTTACAG Gene: Shewmr7_2545: Methionine gamma-lyase (EC 4.4.1.11) |
*
Shewanella baltica OS155 Site: position = -199 score = 4.10269 sequence = ATGTAACAAGTTAATTACAC Gene: Sbal_1622: Methionine gamma-lyase (EC 4.4.1.11) |
*
Shewanella denitrificans OS217 Site: position = -152 score = 4.25656 sequence = ATGTAACATAGTTTTTACAT Gene: Sden_2521: Methionine gamma-lyase (EC 4.4.1.11) |
*
Shewanella frigidimarina NCIMB 400 Site: position = -148 score = 4.68512 sequence = TTGTAAAATTGTTTTTACAT Gene: Sfri_1369: Methionine gamma-lyase (EC 4.4.1.11) |
Gene: Sama_1242: Methionine gamma-lyase (EC 4.4.1.11) |
Gene: Shew_2491: Methionine gamma-lyase (EC 4.4.1.11) |
*
Shewanella pealeana ATCC 700345 Site: position = -215 score = 4.01807 sequence = ACGTAACAATCACTTTACAA Gene: Spea_2664: Methionine gamma-lyase (EC 4.4.1.11) |
*
Shewanella halifaxensis HAW-EB4 Site: position = -214 score = 4.43128 sequence = TTGTAACATTCAGTTTACAA Gene: Shal_2751: Methionine gamma-lyase (EC 4.4.1.11) |
*
Shewanella piezotolerans WP3 Site: position = -242 score = 4.08776 sequence = ACGTAACATATATTTTACAA Gene: swp_3243: Methionine gamma-lyase (EC 4.4.1.11) |
Gene: Ssed_1559: Methionine gamma-lyase (EC 4.4.1.11) |
Gene: Swoo_3095: Methionine gamma-lyase (EC 4.4.1.11) |
Methionine gamma-lyase (EC 4.4.1.11) |
| CRON 3. | |||||||||||||||||
| omp2 |
|
|
|
|
|
|
Gene: Sbal_0959: putative TonB-dependent outer membrane receptor |
*
Shewanella denitrificans OS217 Site: position = -175 score = 4.32277 sequence = TCGTAAATAATTAGTTCCAC Gene: Sden_2931: putative TonB-dependent outer membrane receptor |
*
Shewanella frigidimarina NCIMB 400 Site: position = -297 score = 5.05572 sequence = GTGTAAACCAATAGTTACAC Gene: Sfri_3096: putative TonB-dependent outer membrane receptor |
Gene: Sama_2896: putative TonB-dependent outer membrane receptor |
Gene: Shew_3081: putative TonB-dependent outer membrane receptor |
|
|
|
|
*
Shewanella woodyi ATCC 51908 Site: position = -107 score = 4.06631 sequence = GTGTCAGGAATGTTTTACGT Gene: Swoo_3992: putative TonB-dependent outer membrane receptor |
putative TonB-dependent outer membrane receptor |
| CRON 4. | |||||||||||||||||
| aroA |
*
Shewanella oneidensis MR-1 Site: position = -80 score = 3.63579 sequence = ATGTAGTGTGAAGTTGCCAT Site: position = -101 score = 3.79688 sequence = TAGTAACGTAAACTTGACGT Gene: SO_2404: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) |
*
Shewanella putrefaciens CN-32 Site: position = -102 score = 4.54896 sequence = TTGTAATCTTAACTTGACGC Site: position = -299 score = 4.00688 sequence = TTGGCAAAAAAGCCTGCCAA Gene: Sputcn32_2044: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) |
*
Shewanella sp W3-18-1 Site: position = -102 score = 4.54896 sequence = TTGTAATCTTAACTTGACGC Site: position = -298 score = 4.00688 sequence = TTGGCAAAAAAGCCTGCCAA Gene: Sputw3181_1969: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) |
*
Shewanella sp ANA-3 Site: position = -102 score = 4.54896 sequence = TTGTAATCTTAACTTGACGC Site: position = -300 score = 3.89103 sequence = CTGGCAAAAAAGCCTGCCAA Gene: Shewana3_1975: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) |
*
Shewanella sp MR-4 Site: position = -102 score = 4.54896 sequence = TTGTAATCTTAACTTGACGC Site: position = -300 score = 3.89103 sequence = CTGGCAAAAAAGCCTGCCAA Gene: Shewmr4_1922: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) |
*
Shewanella sp MR-7 Site: position = -101 score = 4.54896 sequence = TTGTAATCTTAACTTGACGC Site: position = -298 score = 3.89103 sequence = CTGGCAAAAAAGCCTGCCAA Gene: Shewmr7_2056: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) |
*
Shewanella baltica OS155 Site: position = -81 score = 3.72419 sequence = GTGTAGCGTGAAGTTGCCAT Site: position = -102 score = 4.54896 sequence = TTGTAATCTTAACTTGACGC Site: position = -299 score = 4.00688 sequence = TTGGCAAAAAAGCCTGCCAA Gene: Sbal_2068: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) |
*
Shewanella denitrificans OS217 Site: position = -131 score = 4.48081 sequence = TTGGAAAGATAAGCTGACAA Gene: Sden_1751: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) |
*
Shewanella frigidimarina NCIMB 400 Site: position = -107 score = 4.11718 sequence = CTGTAATGAATTTGTTCCAC Site: position = -328 score = 4.32614 sequence = TTGGAAAGTTAACGTAACAA Gene: Sfri_2125: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) |
*
Shewanella amazonensis SB2B Site: position = -266 score = 3.78684 sequence = ATGGCAACAAATCTTGCAAT Gene: Sama_1734: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) |
*
Shewanella loihica PV-4 Site: position = -268 score = 4.04909 sequence = TTGGCAAATTTTCATGCCAG Gene: Shew_1952: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) |
*
Shewanella pealeana ATCC 700345 Site: position = -290 score = 4.1745 sequence = CCGGAAATTTTTAGTTCCAC Gene: Spea_2071: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) |
Gene: Shal_2043: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) |
Gene: swp_2488: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) |
*
Shewanella sediminis HAW-EB3 Site: position = -334 score = 3.76647 sequence = ATGGCATGAAATTGTTCCAG Gene: Ssed_2300: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) |
*
Shewanella woodyi ATCC 51908 Site: position = -89 score = 3.93894 sequence = TTGTGTATCAATATTTGCAA Site: position = -323 score = 3.81698 sequence = CTGGCATGTTTTTCTTCCAC Gene: Swoo_2309: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) |
5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) |
| CRON 5. | |||||||||||||||||
| emrD |
*
Shewanella oneidensis MR-1 Site: position = -152 score = 4.50921 sequence = ATGTAAGCTTAATTTTACAG Gene: SO_2389: multidrug resistance protein D |
*
Shewanella putrefaciens CN-32 Site: position = -114 score = 4.60324 sequence = GCGTAAGTTTAACTTTACAA Site: position = -257 score = 3.74361 sequence = ATATCAAGTATTTTATCCAC Gene: Sputcn32_2030: multidrug resistance protein D |
*
Shewanella sp W3-18-1 Site: position = -114 score = 4.60324 sequence = GCGTAAGTTTAACTTTACAA Site: position = -257 score = 3.74361 sequence = ATATCAAGTATTTTATCCAC Gene: Sputw3181_1983: multidrug resistance protein D |
*
Shewanella sp ANA-3 Site: position = -152 score = 4.61358 sequence = GTGTAAGCTTAGTTTGACAA Gene: Shewana3_1989: multidrug resistance protein D |
*
Shewanella sp MR-4 Site: position = -152 score = 4.56364 sequence = GTGTAAGCTAAATTTTACAG Site: position = -218 score = 4.04401 sequence = GTGGCAATTAATTTTACCAG Gene: Shewmr4_1936: multidrug resistance protein D |
*
Shewanella sp MR-7 Site: position = -152 score = 4.56364 sequence = GTGTAAGCTAAATTTTACAG Site: position = -218 score = 4.04401 sequence = GTGGCAATTAATTTTACCAG Gene: Shewmr7_2040: multidrug resistance protein D |
*
Shewanella baltica OS155 Site: position = -154 score = 4.37084 sequence = ACGTAAGTTTAGCTTTACAG Gene: Sbal_2085: multidrug resistance protein D |
|
|
|
|
|
|
|
*
Shewanella sediminis HAW-EB3 Site: position = -161 score = 3.95814 sequence = GTGTAAGCTTGCGTTTACAG Site: position = -182 score = 3.98484 sequence = CTGTAACGCCATCAATACAA Gene: Ssed_2287: multidrug resistance protein D |
*
Shewanella woodyi ATCC 51908 Site: position = -160 score = 4.1316 sequence = TCGTAAGTATAGATTTACGC Gene: Swoo_2329: multidrug resistance protein D |
multidrug resistance protein D |
| CRON 6. | |||||||||||||||||
| tdo |
*
Shewanella oneidensis MR-1 Site: position = -175 score = 4.5296 sequence = GTGTAAATAAAAAGTGGCAT Gene: SO_4414: tryptophan 2,3-dioxygenase |
*
Shewanella putrefaciens CN-32 Site: position = -179 score = 4.5296 sequence = GTGTAAATAAAAAGTGGCAT Gene: Sputcn32_0406: tryptophan 2,3-dioxygenase |
*
Shewanella sp W3-18-1 Site: position = -179 score = 4.5296 sequence = GTGTAAATAAAAAGTGGCAT Gene: Sputw3181_0260: tryptophan 2,3-dioxygenase |
*
Shewanella sp ANA-3 Site: position = -179 score = 4.5296 sequence = GTGTAAATAAAAAGTGGCAT Gene: Shewana3_0294: tryptophan 2,3-dioxygenase |
*
Shewanella sp MR-4 Site: position = -179 score = 4.5296 sequence = GTGTAAATAAAAAGTGGCAT Gene: Shewmr4_0294: tryptophan 2,3-dioxygenase |
*
Shewanella sp MR-7 Site: position = -180 score = 4.5296 sequence = GTGTAAATAAAAAGTGGCAT Gene: Shewmr7_3725: tryptophan 2,3-dioxygenase |
*
Shewanella baltica OS155 Site: position = -159 score = 4.56266 sequence = GTGTAAATAAAAAATGGCAT Gene: Sbal_0303: tryptophan 2,3-dioxygenase |
*
Shewanella denitrificans OS217 Site: position = -122 score = 4.25633 sequence = TCGGAAGTTAAACTTTACAT Gene: Sden_3451: tryptophan 2,3-dioxygenase |
|
Gene: Sama_3418: tryptophan 2,3-dioxygenase |
Gene: Shew_3557: tryptophan 2,3-dioxygenase |
Gene: Spea_3923: tryptophan 2,3-dioxygenase |
|
Gene: swp_0260: tryptophan 2,3-dioxygenase |
|
|
tryptophan 2,3-dioxygenase |
| kyn |
Gene: SO_4413: kynureninase (tryptophan degradation) |
Gene: Sputcn32_0407: kynureninase (tryptophan degradation) |
Gene: Sputw3181_0261: kynureninase (tryptophan degradation) |
Gene: Shewana3_0295: kynureninase (tryptophan degradation) |
Gene: Shewmr4_0295: kynureninase (tryptophan degradation) |
Gene: Shewmr7_3724: kynureninase (tryptophan degradation) |
Gene: Sbal_0304: kynureninase (tryptophan degradation) |
Gene: Sden_3452: kynureninase (tryptophan degradation) |
|
Gene: Sama_3417: kynureninase (tryptophan degradation) |
Gene: Shew_3556: kynureninase (tryptophan degradation) |
Gene: Spea_3922: kynureninase (tryptophan degradation) |
|
Gene: swp_0261: kynureninase (tryptophan degradation) |
|
|
kynureninase (tryptophan degradation) |
| CRON 7. | |||||||||||||||||
| brnQ |
*
Shewanella oneidensis MR-1 Site: position = -121 score = 5.04758 sequence = GTGTAAACATAGGTTTGCAC Gene: SO_0949: Branched-chain amino acid transport system carrier protein |
*
Shewanella putrefaciens CN-32 Site: position = -107 score = 5.12697 sequence = GTGTAAACATAGATTTGCAC Gene: Sputcn32_0889: Branched-chain amino acid transport system carrier protein |
*
Shewanella sp W3-18-1 Site: position = -107 score = 5.12697 sequence = GTGTAAACATAGATTTGCAC Gene: Sputw3181_3284: Branched-chain amino acid transport system carrier protein |
*
Shewanella sp ANA-3 Site: position = -106 score = 5.12697 sequence = GTGTAAACATAGATTTGCAC Gene: Shewana3_3332: Branched-chain amino acid transport system carrier protein |
*
Shewanella sp MR-4 Site: position = -106 score = 5.12697 sequence = GTGTAAACATAGATTTGCAC Gene: Shewmr4_0794: Branched-chain amino acid transport system carrier protein |
*
Shewanella sp MR-7 Site: position = -106 score = 5.12697 sequence = GTGTAAACATAGATTTGCAC Gene: Shewmr7_3229: Branched-chain amino acid transport system carrier protein |
*
Shewanella baltica OS155 Site: position = -107 score = 5.05994 sequence = GTGTAAACAAAGATTTGCAC Gene: Sbal_0842: Branched-chain amino acid transport system carrier protein |
*
Shewanella denitrificans OS217 Site: position = -229 score = 4.10354 sequence = GAGTATCGAAAAGTTTACAC Gene: Sden_0746: Branched-chain amino acid transport system carrier protein |
*
Shewanella frigidimarina NCIMB 400 Site: position = -122 score = 4.84646 sequence = GTGTATTTTTAACTTTACAA Gene: Sfri_0662: Branched-chain amino acid transport system carrier protein |
*
Shewanella amazonensis SB2B Site: position = -109 score = 4.49148 sequence = CTGTAATTCTGGCGTTACAC Gene: Sama_2740: Branched-chain amino acid transport system carrier protein |
*
Shewanella loihica PV-4 Site: position = -102 score = 4.61623 sequence = GTGTAATAAGAAGTTTACAC Gene: Shew_0769: Branched-chain amino acid transport system carrier protein |
*
Shewanella pealeana ATCC 700345 Site: position = -90 score = 5.16326 sequence = GTGTAAAGTAATAATTACAC Gene: Spea_0804: Branched-chain amino acid transport system carrier protein |
*
Shewanella halifaxensis HAW-EB4 Site: position = -94 score = 5.08386 sequence = GTGTAAACTAATCATTACAC Gene: Shal_0859: Branched-chain amino acid transport system carrier protein |
*
Shewanella piezotolerans WP3 Site: position = -153 score = 4.9528 sequence = GTGTAAACCAAATATTACAC Gene: swp_4229: Branched-chain amino acid transport system carrier protein |
*
Shewanella sediminis HAW-EB3 Site: position = -106 score = 4.59558 sequence = GTGTAATTGAAAGTTTACAC Gene: Ssed_0892: Branched-chain amino acid transport system carrier protein |
*
Shewanella woodyi ATCC 51908 Site: position = -67 score = 5.06342 sequence = GTGTAATCTAAAGTTTACAC Gene: Swoo_0894: Branched-chain amino acid transport system carrier protein |
Branched-chain amino acid transport system carrier protein |
| CRON 8. | |||||||||||||||||
| liuR |
*
Shewanella oneidensis MR-1 Site: position = -105 score = 4.61588 sequence = GTGGCAACAAGAATTGACAA Gene: SO_1898: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
*
Shewanella putrefaciens CN-32 Site: position = -108 score = 4.47039 sequence = ATGGCAATTGGGATTGACAC Gene: Sputcn32_1720: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
*
Shewanella sp W3-18-1 Site: position = -108 score = 4.47039 sequence = ATGGCAATTGGGATTGACAC Gene: Sputw3181_2305: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
*
Shewanella sp ANA-3 Site: position = -105 score = 4.61588 sequence = GTGGCAACAAGAATTGACAA Gene: Shewana3_1673: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
*
Shewanella sp MR-4 Site: position = -105 score = 4.61588 sequence = GTGGCAACAAGAATTGACAA Gene: Shewmr4_2321: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
*
Shewanella sp MR-7 Site: position = -105 score = 4.61588 sequence = GTGGCAACAAGAATTGACAA Gene: Shewmr7_2393: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
*
Shewanella baltica OS155 Site: position = -108 score = 4.47039 sequence = ATGGCAATTGGGATTGACAC Gene: Sbal_2827: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
*
Shewanella denitrificans OS217 Site: position = -117 score = 4.20946 sequence = GTGGAAACAGAATTTAACAC Gene: Sden_2244: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
*
Shewanella frigidimarina NCIMB 400 Site: position = -117 score = 4.68249 sequence = GTGGCAAGCAAAATTAACAC Gene: Sfri_2726: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
*
Shewanella amazonensis SB2B Site: position = -123 score = 4.15023 sequence = CTGTAAGCTAAGCCTGACAC Gene: Sama_1363: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
Gene: Shew_2569: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
*
Shewanella pealeana ATCC 700345 Site: position = -111 score = 4.3715 sequence = GTGGCAAGCGCAATTGACAT Gene: Spea_2796: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
*
Shewanella halifaxensis HAW-EB4 Site: position = -110 score = 4.37642 sequence = GTGGCAAGCGCGATTGACAT Gene: Shal_2901: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
*
Shewanella piezotolerans WP3 Site: position = -76 score = 4.1933 sequence = TTGGCACGCACAATTGACAT Gene: swp_3441: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
Gene: Ssed_1459: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
*
Shewanella woodyi ATCC 51908 Site: position = -129 score = 4.54719 sequence = CTGGAAAACTTACTTGCCAT Gene: Swoo_3222: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
| liuA |
Gene: SO_1897: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) |
Gene: Sputcn32_1719: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) |
Gene: Sputw3181_2306: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) |
Gene: Shewana3_1672: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) |
Gene: Shewmr4_2322: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) |
Gene: Shewmr7_2394: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) |
Gene: Sbal_2828: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) |
Gene: Sden_2245: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) |
Gene: Sfri_2727: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) |
Gene: Sama_1362: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) |
Gene: Shew_2570: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) |
Gene: Spea_2797: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) |
Gene: Shal_2902: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) |
Gene: swp_3442: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) |
Gene: Ssed_1458: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) |
Gene: Swoo_3223: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) |
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) |
| liuB |
Gene: SO_1896: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Gene: Sputcn32_1718: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Gene: Sputw3181_2307: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Gene: Shewana3_1671: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Gene: Shewmr4_2323: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Gene: Shewmr7_2395: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Gene: Sbal_2829: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Gene: Sden_2246: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Gene: Sfri_2728: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Gene: Sama_1361: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Gene: Shew_2571: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Gene: Spea_2798: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Gene: Shal_2903: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Gene: swp_3443: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Gene: Ssed_1457: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Gene: Swoo_3224: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
| liuC |
Gene: SO_1895: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Gene: Sputcn32_1717: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Gene: Sputw3181_2308: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Gene: Shewana3_1670: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Gene: Shewmr4_2324: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Gene: Shewmr7_2396: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Gene: Sbal_2830: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Gene: Sden_2247: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Gene: Sfri_2729: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Gene: Sama_1360: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Gene: Shew_2572: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Gene: Spea_2799: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Gene: Shal_2904: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Gene: swp_3444: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Gene: Ssed_1456: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Gene: Swoo_3225: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
| liuD |
Gene: SO_1894: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
Gene: Sputcn32_1716: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
Gene: Sputw3181_2309: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
Gene: Shewana3_1669: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
Gene: Shewmr4_2325: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
Gene: Shewmr7_2397: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
Gene: Sbal_2831: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
Gene: Sden_2248: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
Gene: Sfri_2730: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
Gene: Sama_1359: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
Gene: Shew_2573: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
Gene: Spea_2800: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
2
Shewanella halifaxensis HAW-EB4 Gene: Shal_2906: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) Gene: Shal_2905: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
2
Shewanella piezotolerans WP3 Gene: swp_3445: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) Gene: swp_3446: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
Gene: Ssed_1455: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
Gene: Swoo_3226: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
| Sden_2249 |
|
|
|
|
|
|
|
Gene: Sden_2249: 3-methylcrotonyl-CoA carboxylase alpha subunit |
|
|
|
|
|
|
|
|
3-methylcrotonyl-CoA carboxylase alpha subunit |
| liuE |
Gene: SO_1893: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
Gene: Sputcn32_1715: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
Gene: Sputw3181_2310: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
Gene: Shewana3_1668: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
Gene: Shewmr4_2326: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
Gene: Shewmr7_2398: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
Gene: Sbal_2832: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
Gene: Sden_2250: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
Gene: Sfri_2731: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
Gene: Sama_1358: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
Gene: Shew_2574: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
Gene: Spea_2802: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
Gene: Shal_2907: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
Gene: swp_3448: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
Gene: Ssed_1454: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
Gene: Swoo_3227: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
| liuF |
Gene: SO_1892: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) |
Gene: Sputcn32_1714: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) |
Gene: Sputw3181_2311: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) |
Gene: Shewana3_1667: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) |
Gene: Shewmr4_2327: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) |
Gene: Shewmr7_2399: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) |
Gene: Sbal_2833: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) |
Gene: Sden_2251: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) |
Gene: Sfri_2732: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) |
Gene: Sama_1357: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) |
Gene: Shew_2575: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) |
Gene: Spea_2803: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) |
Gene: Shal_2908: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) |
Gene: swp_3449: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) |
Gene: Ssed_1453: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) |
Gene: Swoo_3228: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) |
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) |
| liuG |
Gene: SO_1891: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) |
Gene: Sputcn32_1713: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) |
Gene: Sputw3181_2312: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) |
Gene: Shewana3_1666: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) |
Gene: Shewmr4_2328: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) |
Gene: Shewmr7_2400: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) |
Gene: Sbal_2834: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) |
Gene: Sden_2252: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) |
Gene: Sfri_2733: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) |
Gene: Sama_1356: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) |
Gene: Shew_2576: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) |
Gene: Spea_2804: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) |
Gene: Shal_2909: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) |
Gene: swp_3450: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) |
Gene: Ssed_1452: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) |
Gene: Swoo_3229: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) |
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) |
| CRON 9. | |||||||||||||||||
| hmgC |
*
Shewanella oneidensis MR-1 Site: position = -239 score = 4.32352 sequence = ACGTAATGATTAGTTTACAG Site: position = -323 score = 3.8297 sequence = ATGTAACAGTATCGTTCCAC Gene: SO_1670: Fumarylacetoacetase (EC 3.7.1.2) |
*
Shewanella putrefaciens CN-32 Site: position = -268 score = 4.02177 sequence = ACGTAATGATTAGTTTACGA Site: position = -352 score = 3.94524 sequence = ATGTAACCGTATCGTTCCAC Gene: Sputcn32_1389: Fumarylacetoacetase (EC 3.7.1.2) |
*
Shewanella sp W3-18-1 Site: position = -268 score = 4.02177 sequence = ACGTAATGATTAGTTTACGA Site: position = -352 score = 3.94524 sequence = ATGTAACCGTATCGTTCCAC Gene: Sputw3181_2712: Fumarylacetoacetase (EC 3.7.1.2) |
*
Shewanella sp ANA-3 Site: position = -236 score = 4.43937 sequence = ACGTAATGATTAGTTTACAA Site: position = -320 score = 3.8297 sequence = ATGTAACAGTATCGTTCCAC Gene: Shewana3_2778: Fumarylacetoacetase (EC 3.7.1.2) |
*
Shewanella sp MR-4 Site: position = -235 score = 4.43937 sequence = ACGTAATGATTAGTTTACAA Site: position = -319 score = 3.8297 sequence = ATGTAACAGTATCGTTCCAC Gene: Shewmr4_2604: Fumarylacetoacetase (EC 3.7.1.2) |
*
Shewanella sp MR-7 Site: position = -235 score = 4.43937 sequence = ACGTAATGATTAGTTTACAA Site: position = -319 score = 3.8297 sequence = ATGTAACAGTATCGTTCCAC Gene: Shewmr7_2671: Fumarylacetoacetase (EC 3.7.1.2) |
*
Shewanella baltica OS155 Site: position = -274 score = 4.02177 sequence = ACGTAATGATTAGTTTACGA Site: position = -358 score = 3.8297 sequence = ATGTAACAGTATCGTTCCAC Gene: Sbal_1487: Fumarylacetoacetase (EC 3.7.1.2) |
*
Shewanella denitrificans OS217 Site: position = -146 score = 4.06206 sequence = TTGTACTGAAAAGTTTACAG Site: position = -228 score = 4.11952 sequence = ATGTAACGAATTAGTGCCAT Gene: Sden_2592: Fumarylacetoacetase (EC 3.7.1.2) |
*
Shewanella frigidimarina NCIMB 400 Site: position = -155 score = 4.85232 sequence = TTGTAACGAATAATTTACAA Gene: Sfri_1331: Fumarylacetoacetase (EC 3.7.1.2) |
*
Shewanella amazonensis SB2B Site: position = -150 score = 4.41982 sequence = CTGTATTTAAAAGTTTACAA Site: position = -234 score = 4.29557 sequence = GTGTAAAAAGAATTTGCCAG Gene: Sama_2219: Fumarylacetoacetase (EC 3.7.1.2) |
*
Shewanella loihica PV-4 Site: position = -169 score = 4.49333 sequence = CTGTCATGAATTGTTTACAA Gene: Shew_1438: Fumarylacetoacetase (EC 3.7.1.2) |
*
Shewanella pealeana ATCC 700345 Site: position = -197 score = 4.78048 sequence = GTGTATCTATAAGTTTACAC Gene: Spea_1451: Fumarylacetoacetase (EC 3.7.1.2) |
*
Shewanella halifaxensis HAW-EB4 Site: position = -183 score = 4.66123 sequence = CTGTAAGTATAAGTTTACAA Gene: Shal_1534: Fumarylacetoacetase (EC 3.7.1.2) |
*
Shewanella piezotolerans WP3 Site: position = -179 score = 4.76526 sequence = CTGTAATTATATGTTTACAA Gene: swp_1653: Fumarylacetoacetase (EC 3.7.1.2) |
*
Shewanella sediminis HAW-EB3 Site: position = -155 score = 4.04389 sequence = GTGTAACTGTTTATTTACGT Site: position = -238 score = 3.99554 sequence = ATGTAAAAGCTTGTTGCCAC Gene: Ssed_2927: Fumarylacetoacetase (EC 3.7.1.2) |
*
Shewanella woodyi ATCC 51908 Site: position = -172 score = 4.77762 sequence = CTGTAATTATTTATTTACAA Site: position = -256 score = 4.24974 sequence = ATGTAACAAGAGATTGCCAC Gene: Swoo_1718: Fumarylacetoacetase (EC 3.7.1.2) |
Fumarylacetoacetase (EC 3.7.1.2) |
| hmgB |
Gene: SO_1671: Maleylacetoacetate isomerase (EC 5.2.1.2) |
Gene: Sputcn32_1390: Maleylacetoacetate isomerase (EC 5.2.1.2) |
Gene: Sputw3181_2711: Maleylacetoacetate isomerase (EC 5.2.1.2) |
Gene: Shewana3_2777: Maleylacetoacetate isomerase (EC 5.2.1.2) |
Gene: Shewmr4_2603: Maleylacetoacetate isomerase (EC 5.2.1.2) |
Gene: Shewmr7_2670: Maleylacetoacetate isomerase (EC 5.2.1.2) |
Gene: Sbal_1488: Maleylacetoacetate isomerase (EC 5.2.1.2) |
Gene: Sden_2591: Maleylacetoacetate isomerase (EC 5.2.1.2) |
Gene: Sfri_1332: Maleylacetoacetate isomerase (EC 5.2.1.2) |
Gene: Sama_2218: Maleylacetoacetate isomerase (EC 5.2.1.2) |
Gene: Shew_1439: Maleylacetoacetate isomerase (EC 5.2.1.2) |
Gene: Spea_1452: Maleylacetoacetate isomerase (EC 5.2.1.2) |
Gene: Shal_1535: Maleylacetoacetate isomerase (EC 5.2.1.2) |
Gene: swp_1654: Maleylacetoacetate isomerase (EC 5.2.1.2) |
Gene: Ssed_2926: Maleylacetoacetate isomerase (EC 5.2.1.2) |
Gene: Swoo_1719: Maleylacetoacetate isomerase (EC 5.2.1.2) |
Maleylacetoacetate isomerase (EC 5.2.1.2) |
| CRON 10. | |||||||||||||||||
| putA |
*
Shewanella oneidensis MR-1 Site: position = -212 score = 4.83423 sequence = TTGTCAATCAAGCGTTACAT Gene: SO_3774: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) |
*
Shewanella putrefaciens CN-32 Site: position = -194 score = 4.82931 sequence = TTGTCAATTAAGCGTTACAT Gene: Sputcn32_3099: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) |
*
Shewanella sp W3-18-1 Site: position = -194 score = 4.82931 sequence = TTGTCAATTAAGCGTTACAT Gene: Sputw3181_0845: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) |
*
Shewanella sp ANA-3 Site: position = -197 score = 4.55661 sequence = TTGTCAATTGAGCGTTACAT Gene: Shewana3_0819: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) |
*
Shewanella sp MR-4 Site: position = -198 score = 4.55661 sequence = TTGTCAATTGAGCGTTACAT Gene: Shewmr4_3122: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) |
*
Shewanella sp MR-7 Site: position = -197 score = 4.55661 sequence = TTGTCAATTGAGCGTTACAT Gene: Shewmr7_0850: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) |
*
Shewanella baltica OS155 Site: position = -194 score = 4.83423 sequence = TTGTCAATCAAGCGTTACAT Gene: Sbal_3458: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) |
Gene: Sden_0689: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) |
Gene: Sfri_0568: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) |
*
Shewanella amazonensis SB2B Site: position = -219 score = 4.01963 sequence = TTGTCAAGTGGGCGTTACGC Gene: Sama_2676: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) |
Gene: Shew_0615: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) |
Gene: Spea_3490: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) |
Gene: Shal_3585: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) |
Gene: swp_0809: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) |
*
Shewanella sediminis HAW-EB3 Site: position = -109 score = 3.97489 sequence = TTGTATACAAAAAATAACAA Gene: Ssed_3846: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) |
Gene: Swoo_0714: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) |
Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) |
| CRON 11. | |||||||||||||||||
| tyrR |
*
Shewanella oneidensis MR-1 Site: position = -190 score = 4.70177 sequence = CTGTAAACTAGGCTTGCCAC Gene: SO_1669: Transcriptional regulator of aromatic amino acid biosynthesis |
*
Shewanella putrefaciens CN-32 Site: position = -188 score = 4.76388 sequence = CTGTAAACTTGACTTGCCAC Gene: Sputcn32_1388: Transcriptional regulator of aromatic amino acid biosynthesis |
*
Shewanella sp W3-18-1 Site: position = -188 score = 4.76388 sequence = CTGTAAACTTGACTTGCCAC Gene: Sputw3181_2713: Transcriptional regulator of aromatic amino acid biosynthesis |
*
Shewanella sp ANA-3 Site: position = -205 score = 4.69685 sequence = CTGTAAACTAGACTTGCCAC Gene: Shewana3_2779: Transcriptional regulator of aromatic amino acid biosynthesis |
*
Shewanella sp MR-4 Site: position = -205 score = 4.69685 sequence = CTGTAAACTAGACTTGCCAC Gene: Shewmr4_2605: Transcriptional regulator of aromatic amino acid biosynthesis |
*
Shewanella sp MR-7 Site: position = -205 score = 4.69685 sequence = CTGTAAACTAGACTTGCCAC Gene: Shewmr7_2672: Transcriptional regulator of aromatic amino acid biosynthesis |
*
Shewanella baltica OS155 Site: position = -196 score = 4.70177 sequence = CTGTAAACTAGGCTTGCCAC Gene: Sbal_1486: Transcriptional regulator of aromatic amino acid biosynthesis |
*
Shewanella denitrificans OS217 Site: position = -155 score = 4.6379 sequence = CTGTAAACAAGACTTGCCAC Gene: Sden_2593: Transcriptional regulator of aromatic amino acid biosynthesis |
*
Shewanella frigidimarina NCIMB 400 Site: position = -92 score = 4.66499 sequence = CTGTAAACTTCACTTGCCAC Gene: Sfri_1330: Transcriptional regulator of aromatic amino acid biosynthesis |
*
Shewanella amazonensis SB2B Site: position = -134 score = 4.6379 sequence = CTGTAAACAAGACTTGCCAC Gene: Sama_2220: Transcriptional regulator of aromatic amino acid biosynthesis |
*
Shewanella loihica PV-4 Site: position = -162 score = 4.70133 sequence = GTGTAAACAACTCTTGCCAC Gene: Shew_1437: Transcriptional regulator of aromatic amino acid biosynthesis |
*
Shewanella pealeana ATCC 700345 Site: position = -158 score = 4.57895 sequence = CTGTAAACAAGTCTTGCCAC Gene: Spea_1450: Transcriptional regulator of aromatic amino acid biosynthesis |
*
Shewanella halifaxensis HAW-EB4 Site: position = -159 score = 4.09066 sequence = CTGTAAACAAGCCTTGCCAC Gene: Shal_1533: Transcriptional regulator of aromatic amino acid biosynthesis |
*
Shewanella piezotolerans WP3 Site: position = -309 score = 4.57895 sequence = cTGTAAAcaagtCTTgcCAC Gene: swp_1652: Transcriptional regulator of aromatic amino acid biosynthesis |
*
Shewanella sediminis HAW-EB3 Site: position = -151 score = 4.6379 sequence = CTGTAAACAAGACTTGCCAC Gene: Ssed_2928: Transcriptional regulator of aromatic amino acid biosynthesis |
*
Shewanella woodyi ATCC 51908 Site: position = -161 score = 4.6379 sequence = CTGTAAACAAGACTTGCCAC Gene: Swoo_1717: Transcriptional regulator of aromatic amino acid biosynthesis |
Transcriptional regulator of aromatic amino acid biosynthesis |
| CRON 12. | |||||||||||||||||
| pep1 |
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|
*
Shewanella baltica OS155 Site: position = -136 score = 4.77717 sequence = TTGTAAATCAAGTGTTACAT Gene: Sbal_3200: Alkaline serine exoprotease A precursor (EC 3.4.21.-) |
*
Shewanella denitrificans OS217 Site: position = -121 score = 4.89688 sequence = TTGTAAATTTATTGTTACAC Gene: Sden_1016: Alkaline serine exoprotease A precursor (EC 3.4.21.-) |
|
|
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|
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*
Shewanella woodyi ATCC 51908 Site: position = -127 score = 5.00152 sequence = TTGTAAATATGATTTTACAC Gene: Swoo_2373: Alkaline serine exoprotease A precursor (EC 3.4.21.-) |
Alkaline serine exoprotease A precursor (EC 3.4.21.-) |
| CRON 13. | |||||||||||||||||
| aprE2 |
|
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|
*
Shewanella sp ANA-3 Site: position = -189 score = 4.70362 sequence = TTGTCATTCTTTATTTACAG Gene: Shewana3_2745: Cold-active alkaline serine protease (EC 3.4.21.62) |
*
Shewanella sp MR-4 Site: position = -189 score = 4.62423 sequence = TTGTCATTCTTTGTTTACAG Gene: Shewmr4_2570: Cold-active alkaline serine protease (EC 3.4.21.62) |
*
Shewanella sp MR-7 Site: position = -189 score = 4.62423 sequence = TTGTCATTCTTTGTTTACAG Gene: Shewmr7_2637: Cold-active alkaline serine protease (EC 3.4.21.62) |
|
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|
Cold-active alkaline serine protease (EC 3.4.21.62) |
| CRON 14. | |||||||||||||||||
| pep2 |
|
|
|
Gene: Shewana3_2681: peptidase M4 thermolysin |
Gene: Shewmr4_2515: peptidase M4 thermolysin |
Gene: Shewmr7_2583: peptidase M4 thermolysin |
|
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|
*
Shewanella amazonensis SB2B Site: position = -140 score = 4.58662 sequence = GTGTAACTCATATGTTACAC Gene: Sama_1201: peptidase M4 thermolysin |
|
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|
|
Gene: Swoo_3129: peptidase M4 thermolysin |
peptidase M4 thermolysin |
| CRON 15. | |||||||||||||||||
| pepD |
Gene: SO_1115: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) |
*
Shewanella putrefaciens CN-32 Site: position = -108 score = 3.87028 sequence = CTGGCAACTTTGGCTGCCAG Gene: Sputcn32_0954: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) |
*
Shewanella sp W3-18-1 Site: position = -108 score = 3.87028 sequence = CTGGCAACTTTGGCTGCCAG Gene: Sputw3181_3222: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) |
Gene: Shewana3_0950: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) |
Gene: Shewmr4_0948: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) |
Gene: Shewmr7_0986: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) |
*
Shewanella baltica OS155 Site: position = -123 score = 4.00814 sequence = CTGGAAACTTTGGCTGCCAG Gene: Sbal_0940: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) |
Gene: Sden_1011: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) |
Gene: Sfri_0962: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) |
*
Shewanella amazonensis SB2B Site: position = -123 score = 4.36728 sequence = CTGGAAACTTTGGCTTCCAC Gene: Sama_2519: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) |
*
Shewanella loihica PV-4 Site: position = -123 score = 4.5857 sequence = GTGGCAACTTAGTATGACAC Gene: Shew_2852: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) |
*
Shewanella pealeana ATCC 700345 Site: position = -141 score = 4.50367 sequence = GTGGAAACTTTGGCTGACAA Gene: Spea_3091: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) |
*
Shewanella halifaxensis HAW-EB4 Site: position = -160 score = 4.58306 sequence = GTGGAAACTTTGCCTGACAA Gene: Shal_3175: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) |
*
Shewanella piezotolerans WP3 Site: position = -140 score = 4.01319 sequence = ATGGCAACTTCTGCTGACAC Gene: swp_1180: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) |
Gene: Ssed_3421: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) |
*
Shewanella woodyi ATCC 51908 Site: position = -180 score = 3.83475 sequence = TTGGCAACTTTCAATGACAG Gene: Swoo_3603: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) |
Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) |
| CRON 16. | |||||||||||||||||
| omp1 |
|
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*
Shewanella amazonensis SB2B Site: position = -326 score = 4.79201 sequence = GTGTAACTACATATTTACAA Gene: Sama_2026: TonB-dependent receptor |
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TonB-dependent receptor |
| pep4 |
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Gene: Sama_2025: prolyl oligopeptidase family protein |
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prolyl oligopeptidase family protein |
| CRON 17. | |||||||||||||||||
| Sfri_3409 |
|
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*
Shewanella frigidimarina NCIMB 400 Site: position = -55 score = 4.33158 sequence = AAGTCAAGCTTAGTTGACAT Site: position = -99 score = 4.67031 sequence = AAGTAAAGCTTACTTGACAC Gene: Sfri_3409: hypothetical protein |
|
*
Shewanella loihica PV-4 Site: position = -45 score = 4.07685 sequence = ATGTAAAGGGTGTTTGACAT Site: position = -90 score = 4.39531 sequence = ATGTAAAGCATGCTTGACCT Gene: Shew_3626: hypothetical protein |
*
Shewanella pealeana ATCC 700345 Site: position = -106 score = 3.94385 sequence = AAGTAAAGCAAGCTTGACTT Site: position = -62 score = 4.21402 sequence = AAGTCAAGCGTGCTTTACAT Gene: Spea_0139: hypothetical protein |
*
Shewanella halifaxensis HAW-EB4 Site: position = -61 score = 4.54884 sequence = AAGTCAAGCTTACTTTACAT Site: position = -105 score = 3.87682 sequence = AAGTAAAGCATGCTTGACTT Gene: Shal_4179: hypothetical protein |
*
Shewanella piezotolerans WP3 Site: position = -47 score = 4.43005 sequence = AAGTAAAGCTCACTTTACAA Gene: swp_0181: hypothetical protein |
*
Shewanella sediminis HAW-EB3 Site: position = -111 score = 3.94385 sequence = AAGTAAAGCAAGCTTGACTT Gene: Ssed_4363: hypothetical protein |
Gene: Swoo_4744: hypothetical protein |
hypothetical protein |
| Sfri_3410 |
|
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Gene: Sfri_3410: transcriptional regulator, XRE family protein |
|
Gene: Shew_3627: transcriptional regulator, XRE family protein |
Gene: Spea_0138: transcriptional regulator, XRE family protein |
Gene: Shal_4180: transcriptional regulator, XRE family protein |
Gene: swp_0180: transcriptional regulator, XRE family protein |
Gene: Ssed_4364: transcriptional regulator, XRE family protein |
Gene: Swoo_4745: transcriptional regulator, XRE family protein |
transcriptional regulator, XRE family protein |
| CRON 18. | |||||||||||||||||
| prlC |
*
Shewanella oneidensis MR-1 Site: position = -147 score = 4.34041 sequence = GTGTAAATCCTAATTGAGAA Gene: SO_4699: Oligopeptidase A (EC 3.4.24.70) |
*
Shewanella putrefaciens CN-32 Site: position = -189 score = 4.39592 sequence = ATGTAAATATTAATTGAGAA Gene: Sputcn32_0087: Oligopeptidase A (EC 3.4.24.70) |
*
Shewanella sp W3-18-1 Site: position = -189 score = 4.39592 sequence = ATGTAAATATTAATTGAGAA Gene: Sputw3181_3978: Oligopeptidase A (EC 3.4.24.70) |
Gene: Shewana3_4051: Oligopeptidase A (EC 3.4.24.70) |
Gene: Shewmr4_3842: Oligopeptidase A (EC 3.4.24.70) |
Gene: Shewmr7_3935: Oligopeptidase A (EC 3.4.24.70) |
Gene: Sbal_0124: Oligopeptidase A (EC 3.4.24.70) |
Gene: Sden_3595: Oligopeptidase A (EC 3.4.24.70) |
Gene: Sfri_3874: Oligopeptidase A (EC 3.4.24.70) |
*
Shewanella amazonensis SB2B Site: position = -51 score = 4.32074 sequence = TTGCAAAACCTGCTTTGCAC Gene: Sama_3546: Oligopeptidase A (EC 3.4.24.70) |
Gene: Shew_3657: Oligopeptidase A (EC 3.4.24.70) |
Gene: Spea_4065: Oligopeptidase A (EC 3.4.24.70) |
Gene: Shal_0193: Oligopeptidase A (EC 3.4.24.70) |
Gene: swp_4926: Oligopeptidase A (EC 3.4.24.70) |
Gene: Ssed_0145: Oligopeptidase A (EC 3.4.24.70) |
Gene: Swoo_0124: Oligopeptidase A (EC 3.4.24.70) |
Oligopeptidase A (EC 3.4.24.70) |
| CRON 19. | |||||||||||||||||
| SO1117 |
Gene: SO_1117: peptidase M17, leucyl aminopeptidase |
*
Shewanella putrefaciens CN-32 Site: position = -116 score = 3.87028 sequence = CTGGCAGCCAAAGTTGCCAG Gene: Sputcn32_0955: peptidase M17, leucyl aminopeptidase |
*
Shewanella sp W3-18-1 Site: position = -116 score = 3.87028 sequence = CTGGCAGCCAAAGTTGCCAG Gene: Sputw3181_3221: peptidase M17, leucyl aminopeptidase |
Gene: Shewana3_0951: peptidase M17, leucyl aminopeptidase |
Gene: Shewmr4_0949: peptidase M17, leucyl aminopeptidase |
Gene: Shewmr7_0987: peptidase M17, leucyl aminopeptidase |
*
Shewanella baltica OS155 Site: position = -116 score = 4.00814 sequence = CTGGCAGCCAAAGTTTCCAG Gene: Sbal_0941: peptidase M17, leucyl aminopeptidase |
|
Gene: Sfri_0963: peptidase M17, leucyl aminopeptidase |
*
Shewanella amazonensis SB2B Site: position = -45 score = 4.36728 sequence = GTGGAAGCCAAAGTTTCCAG Gene: Sama_2518: peptidase M17, leucyl aminopeptidase |
*
Shewanella loihica PV-4 Site: position = -320 score = 4.5857 sequence = GTGTCATACTAAGTTGCCAC Gene: Shew_2851: peptidase M17, leucyl aminopeptidase |
*
Shewanella pealeana ATCC 700345 Site: position = -111 score = 4.50367 sequence = TTGTCAGCCAAAGTTTCCAC Gene: Spea_3090: peptidase M17, leucyl aminopeptidase |
|
*
Shewanella piezotolerans WP3 Site: position = -106 score = 4.01319 sequence = GTGTCAGCAGAAGTTGCCAT Gene: swp_1181: peptidase M17, leucyl aminopeptidase |
Gene: Ssed_3420: peptidase M17, leucyl aminopeptidase |
*
Shewanella woodyi ATCC 51908 Site: position = -151 score = 3.83475 sequence = CTGTCATTGAAAGTTGCCAA Gene: Swoo_3602: peptidase M17, leucyl aminopeptidase |
peptidase M17, leucyl aminopeptidase |
| CRON 20. | |||||||||||||||||
| ipdC |
|
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*
Shewanella denitrificans OS217 Site: position = -181 score = 4.20288 sequence = TTGTATACAAAATATGACAA Gene: Sden_1376: Indole-3-pyruvate decarboxylase (EC 4.1.1.74) |
|
*
Shewanella amazonensis SB2B Site: position = -138 score = 3.79663 sequence = GTGTCACGCCCGGATGACAG Site: position = -203 score = 3.94593 sequence = ACGTAAGCCAGGCTTTCCAA Gene: Sama_1025: Indole-3-pyruvate decarboxylase (EC 4.1.1.74) |
*
Shewanella loihica PV-4 Site: position = -134 score = 4.13245 sequence = CTGTAACGATATCTTGTCAC Gene: Shew_3635: Indole-3-pyruvate decarboxylase (EC 4.1.1.74) |
|
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|
*
Shewanella sediminis HAW-EB3 Site: position = -211 score = 4.35531 sequence = GTGTAAAGCCGGGTCTACAC Site: position = -137 score = 4.24601 sequence = ATGTAAAGTTAACTGTACGT Gene: Ssed_0171: Indole-3-pyruvate decarboxylase (EC 4.1.1.74) |
|
Indole-3-pyruvate decarboxylase (EC 4.1.1.74) |
| CRON 21. | |||||||||||||||||
| pep3 |
*
Shewanella oneidensis MR-1 Site: position = -173 score = 4.18411 sequence = ATGGTAATTTTTAGTTACAA Gene: SO_3844: peptidase, M13 family |
*
Shewanella putrefaciens CN-32 Site: position = -276 score = 3.6298 sequence = ATGTTAAGTTTATTTGCCTT Gene: Sputcn32_0791: peptidase, M13 family |
*
Shewanella sp W3-18-1 Site: position = -276 score = 3.6298 sequence = ATGTTAAGTTTATTTGCCTT Gene: Sputw3181_3384: peptidase, M13 family |
*
Shewanella sp ANA-3 Site: position = -172 score = 4.18411 sequence = ATGGTAATTTTTAGTTACAA Gene: Shewana3_0759: peptidase, M13 family |
*
Shewanella sp MR-4 Site: position = -173 score = 4.18411 sequence = ATGGTAATTTTTAGTTACAA Gene: Shewmr4_3179: peptidase, M13 family |
*
Shewanella sp MR-7 Site: position = -172 score = 4.18411 sequence = ATGGTAATTTTTAGTTACAA Gene: Shewmr7_0787: peptidase, M13 family |
*
Shewanella baltica OS155 Site: position = -173 score = 3.99379 sequence = CTGGTAACCTTTAGTTACAT Gene: Sbal_0685: peptidase, M13 family |
*
Shewanella denitrificans OS217 Site: position = -224 score = 3.78381 sequence = TTGGTTACATAAATTGCCAG Gene: Sden_1089: peptidase, M13 family |
Gene: Sfri_0842: peptidase, M13 family |
Gene: Sama_2615: peptidase, M13 family |
*
Shewanella loihica PV-4 Site: position = -180 score = 4.11541 sequence = GAGGAAATCTTTACTTACAT Gene: Shew_2973: peptidase, M13 family |
*
Shewanella pealeana ATCC 700345 Site: position = -237 score = 3.76572 sequence = TGGGAAACCTTTTCTTACAC Gene: Spea_3177: peptidase, M13 family |
*
Shewanella halifaxensis HAW-EB4 Site: position = -202 score = 3.85714 sequence = TAGGAAACCTTTTCTTACAC Gene: Shal_3258: peptidase, M13 family |
*
Shewanella piezotolerans WP3 Site: position = -189 score = 3.85714 sequence = TAGGAAACCTTTTCTTACAC Gene: swp_3866: peptidase, M13 family |
*
Shewanella sediminis HAW-EB3 Site: position = -218 score = 4.03602 sequence = AAGGAAACCTTTACTTACAC Gene: Ssed_3509: peptidase, M13 family |
*
Shewanella woodyi ATCC 51908 Site: position = -178 score = 3.71963 sequence = AAGGAAACCTTTTCTTACAT Gene: Swoo_0911: peptidase, M13 family |
peptidase, M13 family |
| CRON 22. | |||||||||||||||||
| aprE |
Gene: SO_3106: Alkaline serine protease |
Gene: Sputcn32_2477: Alkaline serine protease |
Gene: Sputw3181_1531: Alkaline serine protease |
*
Shewanella sp ANA-3 Site: position = -357 score = 3.85355 sequence = TTTGAAATTATTCATTCCAA Gene: Shewana3_1443: Alkaline serine protease |
*
Shewanella sp MR-4 Site: position = -357 score = 3.92058 sequence = TTTGAAATTAATCATTCCAA Gene: Shewmr4_1390: Alkaline serine protease |
*
Shewanella sp MR-7 Site: position = -357 score = 3.92058 sequence = TTTGAAATTAATCATTCCAA Gene: Shewmr7_1455: Alkaline serine protease |
Gene: Sbal_2779: Alkaline serine protease |
*
Shewanella denitrificans OS217 Site: position = -105 score = 4.11543 sequence = GCGTATATAAATGGTTACAT Gene: Sden_1409: Alkaline serine protease |
*
Shewanella frigidimarina NCIMB 400 Site: position = -333 score = 4.7263 sequence = CTGCAAAAATATCTTTACAC Gene: Sfri_2692: Alkaline serine protease |
Gene: Sama_2185: Alkaline serine protease |
Gene: Shew_2443: Alkaline serine protease |
|
|
*
Shewanella piezotolerans WP3 Site: position = -171 score = 4.02413 sequence = ACGTAAAGAAATCTGTCCAC Gene: swp_3159: Alkaline serine protease |
Gene: Ssed_1611: Alkaline serine protease |
Gene: Swoo_3041: Alkaline serine protease |
Alkaline serine protease |
| CRON 23. | |||||||||||||||||
| phhA |
*
Shewanella oneidensis MR-1 Site: position = -122 score = 4.3877 sequence = TTGTAATATTTGCTTTACGT Gene: SO_1666: Phenylalanine-4-hydroxylase (EC 1.14.16.1) |
*
Shewanella putrefaciens CN-32 Site: position = -122 score = 4.3877 sequence = TTGTAATATTTGCTTTACGT Gene: Sputcn32_1386: Phenylalanine-4-hydroxylase (EC 1.14.16.1) |
*
Shewanella sp W3-18-1 Site: position = -122 score = 4.3877 sequence = TTGTAATATTTGCTTTACGT Gene: Sputw3181_2715: Phenylalanine-4-hydroxylase (EC 1.14.16.1) |
*
Shewanella sp ANA-3 Site: position = -122 score = 4.3877 sequence = TTGTAATATTTGCTTTACGT Gene: Shewana3_2781: Phenylalanine-4-hydroxylase (EC 1.14.16.1) |
*
Shewanella sp MR-4 Site: position = -122 score = 4.38278 sequence = TTGTAATATTTACTTTACGT Gene: Shewmr4_2607: Phenylalanine-4-hydroxylase (EC 1.14.16.1) |
*
Shewanella sp MR-7 Site: position = -122 score = 4.3877 sequence = TTGTAATATTTGCTTTACGT Gene: Shewmr7_2674: Phenylalanine-4-hydroxylase (EC 1.14.16.1) |
*
Shewanella baltica OS155 Site: position = -122 score = 4.3877 sequence = TTGTAATATTTGCTTTACGT Gene: Sbal_1484: Phenylalanine-4-hydroxylase (EC 1.14.16.1) |
*
Shewanella denitrificans OS217 Site: position = -127 score = 4.41929 sequence = TTGTATGCTTAAGTTTACAA Gene: Sden_2595: Phenylalanine-4-hydroxylase (EC 1.14.16.1) |
*
Shewanella frigidimarina NCIMB 400 Site: position = -121 score = 4.05912 sequence = TTGTATTTATTTGTTTACGA Gene: Sfri_1328: Phenylalanine-4-hydroxylase (EC 1.14.16.1) |
*
Shewanella amazonensis SB2B Site: position = -123 score = 4.3448 sequence = TTGTAATAAAAGCTTTACGA Gene: Sama_2222: Phenylalanine-4-hydroxylase (EC 1.14.16.1) |
*
Shewanella loihica PV-4 Site: position = -87 score = 4.69301 sequence = ATGTAAATTTGAGGTTACAT Gene: Shew_1435: Phenylalanine-4-hydroxylase (EC 1.14.16.1) |
*
Shewanella pealeana ATCC 700345 Site: position = -239 score = 4.31015 sequence = GTGTCAATTTCTATATACGC Site: position = -173 score = 4.75375 sequence = GTGTAACATTAGCATTACAC Gene: Spea_1448: Phenylalanine-4-hydroxylase (EC 1.14.16.1) |
*
Shewanella halifaxensis HAW-EB4 Site: position = -133 score = 4.28999 sequence = GTGTAACAACTTCGTTACAC Gene: Shal_1531: Phenylalanine-4-hydroxylase (EC 1.14.16.1) |
*
Shewanella piezotolerans WP3 Site: position = -188 score = 4.59104 sequence = CTGTAAATTATGGCTTACAA Site: position = -123 score = 4.49937 sequence = ATGTAAACTTATGGTTACGC Gene: swp_1650: Phenylalanine-4-hydroxylase (EC 1.14.16.1) |
*
Shewanella sediminis HAW-EB3 Site: position = -188 score = 3.67008 sequence = TCGTCAATAAATGGTGACGA Site: position = -122 score = 4.21611 sequence = TTGTAAGCAAATTGTTACAC Gene: Ssed_2930: Phenylalanine-4-hydroxylase (EC 1.14.16.1) |
*
Shewanella woodyi ATCC 51908 Site: position = -121 score = 4.5999 sequence = GTGTAACTTTTTGGTTACAA Site: position = -186 score = 3.7752 sequence = TTGGCAATAATTCAATACGA Gene: Swoo_1715: Phenylalanine-4-hydroxylase (EC 1.14.16.1) |
Phenylalanine-4-hydroxylase (EC 1.14.16.1) |
| phhB |
Gene: SO_1667: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
Gene: Sputcn32_1387: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
Gene: Sputw3181_2714: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
Gene: Shewana3_2780: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
Gene: Shewmr4_2606: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
Gene: Shewmr7_2673: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
Gene: Sbal_1485: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
Gene: Sden_2594: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
Gene: Sfri_1329: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
Gene: Sama_2221: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
Gene: Shew_1436: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
Gene: Spea_1449: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
Gene: Shal_1532: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
Gene: swp_1651: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
Gene: Ssed_2929: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
Gene: Swoo_1716: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
| CRON 24. | |||||||||||||||||
| aceB |
*
Shewanella oneidensis MR-1 Site: position = -372 score = 3.72413 sequence = GTGTAATCATTGTTTTTCGA Gene: SO_1483: Malate synthase (EC 2.3.3.9) |
*
Shewanella putrefaciens CN-32 Site: position = -304 score = 4.69121 sequence = GTGTAATTATAAATTTACGT Gene: Sputcn32_1238: Malate synthase (EC 2.3.3.9) |
*
Shewanella sp W3-18-1 Site: position = -303 score = 4.49891 sequence = GTGTAATTATAAATTTACTT Gene: Sputw3181_2866: Malate synthase (EC 2.3.3.9) |
*
Shewanella sp ANA-3 Site: position = -372 score = 4.29092 sequence = CTGTATATTTAAATTTTCAA Gene: Shewana3_2943: Malate synthase (EC 2.3.3.9) |
*
Shewanella sp MR-4 Site: position = -372 score = 4.29092 sequence = CTGTATAGTTAAATTTTCAA Gene: Shewmr4_2767: Malate synthase (EC 2.3.3.9) |
*
Shewanella sp MR-7 Site: position = -372 score = 3.81731 sequence = CTGTACATTTAAATTTTCAG Gene: Shewmr7_2845: Malate synthase (EC 2.3.3.9) |
*
Shewanella baltica OS155 Site: position = -380 score = 3.58661 sequence = CTGTATTAATATATTTACTG Gene: Sbal_1316: Malate synthase (EC 2.3.3.9) |
*
Shewanella denitrificans OS217 Site: position = -324 score = 3.99665 sequence = TTGTAAGTTATTATTTACTG Gene: Sden_1245: Malate synthase (EC 2.3.3.9) |
*
Shewanella frigidimarina NCIMB 400 Site: position = -458 score = 4.38871 sequence = tgGTAAAGaaAtATTTACAg Gene: Sfri_1101: Malate synthase (EC 2.3.3.9) |
*
Shewanella amazonensis SB2B Site: position = -450 score = 4.08538 sequence = TTGTAAATTAAATATTAAAT Site: position = -364 score = 3.73938 sequence = GTGTATTAAAAATCTTACAG Gene: Sama_2381: Malate synthase (EC 2.3.3.9) |
*
Shewanella loihica PV-4 Site: position = -393 score = 3.37001 sequence = CTGTATCGACAAAATTACTA Gene: Shew_1275: Malate synthase (EC 2.3.3.9) |
*
Shewanella pealeana ATCC 700345 Site: position = -415 score = 3.89022 sequence = GTGGCAATAATTGTTAACGA Gene: Spea_1290: Malate synthase (EC 2.3.3.9) |
*
Shewanella halifaxensis HAW-EB4 Site: position = -458 score = 4.12361 sequence = aTGTAAAagTAtATTgACgC Gene: Shal_1352: Malate synthase (EC 2.3.3.9) |
*
Shewanella piezotolerans WP3 Site: position = -412 score = 4.16432 sequence = CTGTATTTATAATATTACAC Gene: swp_1433: Malate synthase (EC 2.3.3.9) |
*
Shewanella sediminis HAW-EB3 Site: position = -371 score = 4.23351 sequence = CTGTAAGTTTATTTTTACGC Gene: Ssed_1414: Malate synthase (EC 2.3.3.9) |
*
Shewanella woodyi ATCC 51908 Site: position = -401 score = 3.91313 sequence = GTGTATCATTAAGTTTACTT Site: position = -341 score = 3.6064 sequence = TTGGTAAATTTGTCTGACAA Gene: Swoo_1528: Malate synthase (EC 2.3.3.9) |
Malate synthase (EC 2.3.3.9) |
| aceA |
Gene: SO_1484: Isocitrate lyase (EC 4.1.3.1) |
Gene: Sputcn32_1239: Isocitrate lyase (EC 4.1.3.1) |
Gene: Sputw3181_2865: Isocitrate lyase (EC 4.1.3.1) |
Gene: Shewana3_2942: Isocitrate lyase (EC 4.1.3.1) |
Gene: Shewmr4_2766: Isocitrate lyase (EC 4.1.3.1) |
Gene: Shewmr7_2844: Isocitrate lyase (EC 4.1.3.1) |
Gene: Sbal_1317: Isocitrate lyase (EC 4.1.3.1) |
Gene: Sden_1246: Isocitrate lyase (EC 4.1.3.1) |
Gene: Sfri_1102: Isocitrate lyase (EC 4.1.3.1) |
Gene: Sama_2380: Isocitrate lyase (EC 4.1.3.1) |
Gene: Shew_1276: Isocitrate lyase (EC 4.1.3.1) |
|
|
|
Gene: Ssed_1415: Isocitrate lyase (EC 4.1.3.1) |
|
Isocitrate lyase (EC 4.1.3.1) |
| CRON 25. | |||||||||||||||||
| ivdA |
*
Shewanella oneidensis MR-1 Site: position = -159 score = 4.36367 sequence = CTGTAAATCCTGACTGACAA Gene: SO_1677: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) |
*
Shewanella putrefaciens CN-32 Site: position = -167 score = 4.29981 sequence = CTGTAAATCCTTACTGACAA Gene: Sputcn32_1397: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) |
*
Shewanella sp W3-18-1 Site: position = -167 score = 4.29981 sequence = CTGTAAATCCTTACTGACAA Gene: Sputw3181_2704: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) |
*
Shewanella sp ANA-3 Site: position = -159 score = 4.36367 sequence = CTGTAAATCCTGACTGACAA Gene: Shewana3_2771: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) |
*
Shewanella sp MR-4 Site: position = -159 score = 4.36367 sequence = CTGTAAATCCTGACTGACAA Gene: Shewmr4_2597: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) |
*
Shewanella sp MR-7 Site: position = -159 score = 4.36367 sequence = CTGTAAATCCTGACTGACAA Gene: Shewmr7_2664: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) |
*
Shewanella baltica OS155 Site: position = -162 score = 4.28376 sequence = CTGTAAATCCTTACTGACAT Gene: Sbal_1495: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) |
*
Shewanella denitrificans OS217 Site: position = -159 score = 4.40354 sequence = GTGTAAATCTTCAGTGACAA Gene: Sden_1943: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) |
*
Shewanella frigidimarina NCIMB 400 Site: position = -140 score = 4.05236 sequence = CTGTAAATCTTCACTGACAA Gene: Sfri_1338: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) |
*
Shewanella amazonensis SB2B Site: position = -195 score = 3.82137 sequence = GTGTCAATCTCAGTTCCCGC Site: position = -173 score = 4.56062 sequence = CTGTAAATCCAGAGTGACAA Gene: Sama_1375: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) |
*
Shewanella loihica PV-4 Site: position = -168 score = 4.42579 sequence = CTGTAAATTCAGCCTGACAA Gene: Shew_1667: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) |
*
Shewanella pealeana ATCC 700345 Site: position = -231 score = 4.51009 sequence = GTGTAAATTCTATGTGACAA Gene: Spea_2783: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) |
*
Shewanella halifaxensis HAW-EB4 Site: position = -231 score = 4.44001 sequence = GTGTAAATCCTTTGTGACAT Gene: Shal_2878: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) |
*
Shewanella piezotolerans WP3 Site: position = -75 score = 3.82776 sequence = TTTTAAGTTGATGTTTACAC Gene: swp_3387: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) |
*
Shewanella sediminis HAW-EB3 Site: position = -185 score = 4.47754 sequence = CTGTAAATCCTGAGTGACAT Gene: Ssed_1473: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) |
*
Shewanella woodyi ATCC 51908 Site: position = -173 score = 4.71838 sequence = CTGTAAATCTTGAGTGACAT Gene: Swoo_3202: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) |
3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) |
| ivdB |
Gene: SO_1678: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) |
Gene: Sputcn32_1398: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) |
Gene: Sputw3181_2703: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) |
Gene: Shewana3_2770: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) |
Gene: Shewmr4_2596: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) |
Gene: Shewmr7_2663: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) |
Gene: Sbal_1496: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) |
Gene: Sden_1942: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) |
Gene: Sfri_1339: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) |
Gene: Sama_1376: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) |
Gene: Shew_1668: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) |
Gene: Spea_2782: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) |
Gene: Shal_2877: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) |
Gene: swp_3386: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) |
Gene: Ssed_1474: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) |
Gene: Swoo_3201: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) |
Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) |
| ivdC |
Gene: SO_1679: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) |
Gene: Sputcn32_1399: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) |
Gene: Sputw3181_2702: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) |
Gene: Shewana3_2769: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) |
Gene: Shewmr4_2595: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) |
Gene: Shewmr7_2662: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) |
Gene: Sbal_1497: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) |
Gene: Sden_1941: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) |
Gene: Sfri_1340: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) |
Gene: Sama_1377: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) |
Gene: Shew_1669: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) |
Gene: Spea_2781: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) |
Gene: Shal_2876: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) |
Gene: swp_3385: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) |
Gene: Ssed_1475: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) |
Gene: Swoo_3200: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) |
Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) |
| ivdD |
Gene: SO_1680: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) |
Gene: Sputcn32_1400: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) |
Gene: Sputw3181_2701: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) |
Gene: Shewana3_2768: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) |
Gene: Shewmr4_2594: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) |
Gene: Shewmr7_2661: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) |
Gene: Sbal_1498: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) |
Gene: Sden_1940: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) |
Gene: Sfri_1341: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) |
Gene: Sama_1378: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) |
Gene: Shew_1670: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) |
Gene: Spea_2780: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) |
Gene: Shal_2875: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) |
Gene: swp_3384: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) |
Gene: Ssed_1476: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) |
Gene: Swoo_3199: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) |
Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) |
| ivdE |
Gene: SO_1681: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) |
Gene: Sputcn32_1401: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) |
Gene: Sputw3181_2700: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) |
Gene: Shewana3_2767: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) |
Gene: Shewmr4_2593: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) |
Gene: Shewmr7_2660: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) |
Gene: Sbal_1499: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) |
Gene: Sden_1939: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) |
Gene: Sfri_1342: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) |
Gene: Sama_1379: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) |
Gene: Shew_1671: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) |
Gene: Spea_2779: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) |
Gene: Shal_2874: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) |
Gene: swp_3383: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) |
Gene: Ssed_1477: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) |
Gene: Swoo_3198: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) |
3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) |
| ivdF |
Gene: SO_1682: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) |
Gene: Sputcn32_1402: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) |
Gene: Sputw3181_2699: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) |
Gene: Shewana3_2766: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) |
Gene: Shewmr4_2592: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) |
Gene: Shewmr7_2659: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) |
Gene: Sbal_1500: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) |
Gene: Sden_1938: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) |
Gene: Sfri_1343: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) |
Gene: Sama_1380: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) |
Gene: Shew_1672: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) |
Gene: Spea_2778: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) |
Gene: Shal_2873: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) |
Gene: swp_3382: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) |
Gene: Ssed_1478: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) |
Gene: Swoo_3197: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) |
3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) |
| ivdG |
Gene: SO_1683: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
Gene: Sputcn32_1403: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
Gene: Sputw3181_2698: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
Gene: Shewana3_2765: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
Gene: Shewmr4_2591: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
Gene: Shewmr7_2658: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
Gene: Sbal_1501: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
Gene: Sden_1937: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
Gene: Sfri_1344: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
Gene: Sama_1381: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
Gene: Shew_1673: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
Gene: Spea_2777: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
Gene: Shal_2872: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
Gene: swp_3381: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
Gene: Ssed_1479: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
Gene: Swoo_3196: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
| CRON 26. | |||||||||||||||||
| bkdA1 |
*
Shewanella oneidensis MR-1 Site: position = -160 score = 4.91636 sequence = TTGTAAAGCAATATATACAT Gene: SO_2339: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) |
*
Shewanella putrefaciens CN-32 Site: position = -160 score = 4.91636 sequence = TTGTAAAGCAATATATACAT Gene: Sputcn32_1885: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) |
*
Shewanella sp W3-18-1 Site: position = -160 score = 4.91636 sequence = TTGTAAAGCAATATATACAT Gene: Sputw3181_2123: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) |
*
Shewanella sp ANA-3 Site: position = -160 score = 4.84932 sequence = TTGTAAAGCATTATATACAT Gene: Shewana3_2131: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) |
*
Shewanella sp MR-4 Site: position = -160 score = 4.84932 sequence = TTGTAAAGCATTATATACAT Gene: Shewmr4_2028: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) |
*
Shewanella sp MR-7 Site: position = -160 score = 4.84932 sequence = TTGTAAAGCATTATATACAT Gene: Shewmr7_1947: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) |
*
Shewanella baltica OS155 Site: position = -160 score = 4.91636 sequence = TTGTAAAGCAATATATACAT Gene: Sbal_4508: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) |
*
Shewanella denitrificans OS217 Site: position = -153 score = 4.48424 sequence = GCGTAAAGCAAATTATACAA Gene: Sden_1786: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) |
*
Shewanella frigidimarina NCIMB 400 Site: position = -156 score = 4.49875 sequence = TCGTAAAGCAATATATACAT Gene: Sfri_1935: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) |
*
Shewanella amazonensis SB2B Site: position = -150 score = 4.29316 sequence = CTGTAAAGCAATTAATACAT Gene: Sama_1709: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) |
*
Shewanella loihica PV-4 Site: position = -175 score = 4.70177 sequence = TTGTAAAGCTAGCGATACAT Gene: Shew_1925: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) |
*
Shewanella pealeana ATCC 700345 Site: position = -161 score = 4.82092 sequence = ATGTAAACCAATATATACAT Gene: Spea_2246: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) |
*
Shewanella halifaxensis HAW-EB4 Site: position = -161 score = 4.82092 sequence = ATGTAAACCAATATATACAT Gene: Shal_2234: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) |
*
Shewanella piezotolerans WP3 Site: position = -162 score = 4.82092 sequence = ATGTAAACCAATATATACAT Gene: swp_2606: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) |
*
Shewanella sediminis HAW-EB3 Site: position = -172 score = 4.40072 sequence = TTGTAAAGCTAAAGATACGC Gene: Ssed_2329: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) |
*
Shewanella woodyi ATCC 51908 Site: position = -171 score = 4.03349 sequence = ATGTAAAGCTAAACATACGG Gene: Swoo_2278: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) |
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) |
| bkdA2 |
Gene: SO_2340: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) |
Gene: Sputcn32_1886: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) |
Gene: Sputw3181_2122: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) |
Gene: Shewana3_2130: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) |
Gene: Shewmr4_2027: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) |
Gene: Shewmr7_1948: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) |
Gene: Sbal_4507: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) |
Gene: Sden_1787: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) |
Gene: Sfri_1936: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) |
Gene: Sama_1710: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) |
Gene: Shew_1926: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) |
Gene: Spea_2245: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) |
Gene: Shal_2233: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) |
Gene: swp_2605: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) |
Gene: Ssed_2328: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) |
Gene: Swoo_2279: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) |
Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) |
| bkdB |
Gene: SO_2341: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) |
Gene: Sputcn32_1887: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) |
Gene: Sputw3181_2121: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) |
Gene: Shewana3_2129: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) |
Gene: Shewmr4_2026: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) |
Gene: Shewmr7_1949: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) |
Gene: Sbal_4506: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) |
Gene: Sden_1788: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) |
Gene: Sfri_1937: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) |
Gene: Sama_1711: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) |
Gene: Shew_1927: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) |
Gene: Spea_2244: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) |
Gene: Shal_2232: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) |
Gene: swp_2604: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) |
Gene: Ssed_2327: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) |
Gene: Swoo_2280: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) |
Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) |
| CRON 27. | |||||||||||||||||
| tyrB |
*
Shewanella oneidensis MR-1 Site: position = -155 score = 3.47343 sequence = TCGGCAGGCTTTTTTGCCAG Gene: SO2406: Tyrosine aminotransferase (EC 2.6.1.42) |
*
Shewanella putrefaciens CN-32 Site: position = -156 score = 4.00688 sequence = TTGGCAGGCTTTTTTGCCAA Gene: Sputcn32_2045: Tyrosine aminotransferase (EC 2.6.1.42) |
*
Shewanella sp W3-18-1 Site: position = -156 score = 4.00688 sequence = TTGGCAGGCTTTTTTGCCAA Gene: Sputw3181_1967: Tyrosine aminotransferase (EC 2.6.1.42) |
*
Shewanella sp ANA-3 Site: position = -155 score = 3.89103 sequence = TTGGCAGGCTTTTTTGCCAG Gene: Shewana3_1974: Tyrosine aminotransferase (EC 2.6.1.42) |
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Shewanella sp MR-4 Site: position = -155 score = 3.89103 sequence = TTGGCAGGCTTTTTTGCCAG Gene: Shewmr4_1921: Tyrosine aminotransferase (EC 2.6.1.42) |
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Shewanella sp MR-7 Site: position = -155 score = 3.89103 sequence = TTGGCAGGCTTTTTTGCCAG Gene: Shewmr7_2057: Tyrosine aminotransferase (EC 2.6.1.42) |
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Shewanella baltica OS155 Site: position = -156 score = 4.00688 sequence = TTGGCAGGCTTTTTTGCCAA Gene: Sbal_2067: Tyrosine aminotransferase (EC 2.6.1.42) |
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Shewanella denitrificans OS217 Site: position = -269 score = 4.48081 sequence = TTGTCAGCTTATCTTTCCAA Gene: Sden_1750: Tyrosine aminotransferase (EC 2.6.1.42) |
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Shewanella frigidimarina NCIMB 400 Site: position = -130 score = 4.32614 sequence = TTGTTACGTTAACTTTCCAA Gene: Sfri_2126: Tyrosine aminotransferase (EC 2.6.1.42) |
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Shewanella amazonensis SB2B Site: position = -224 score = 3.78684 sequence = ATTGCAAGATTTGTTGCCAT Gene: Sama_1733: Tyrosine aminotransferase (EC 2.6.1.42) |
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Shewanella loihica PV-4 Site: position = -141 score = 4.04909 sequence = CTGGCATGAAAATTTGCCAA Gene: Shew_1951: Tyrosine aminotransferase (EC 2.6.1.42) |
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Shewanella pealeana ATCC 700345 Site: position = -138 score = 4.1745 sequence = GTGGAACTAAAAATTTCCGG Gene: Spea_2070: Tyrosine aminotransferase (EC 2.6.1.42) |
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Shewanella halifaxensis HAW-EB4 Site: position = -243 score = 3.36918 sequence = TCGTAGATATAAAGTTACTC Gene: Shal_2042: Tyrosine aminotransferase (EC 2.6.1.42) |
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Shewanella piezotolerans WP3 Site: position = -147 score = 4.23545 sequence = TTGGAATCAATAATTGCCAG Gene: swp_2486: Tyrosine aminotransferase (EC 2.6.1.42) |
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Shewanella sediminis HAW-EB3 Site: position = -135 score = 3.76647 sequence = CTGGAACAATTTCATGCCAT Gene: Ssed_2301: Tyrosine aminotransferase (EC 2.6.1.42) |
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Shewanella woodyi ATCC 51908 Site: position = -178 score = 3.67072 sequence = TTTAAAAGCAAACTTGCCAA Site: position = -153 score = 3.81698 sequence = GTGGAAGAAAAACATGCCAG Gene: Swoo_2308: Tyrosine aminotransferase (EC 2.6.1.42) |
Tyrosine aminotransferase (EC 2.6.1.42) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |