Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of TyrR in Shewanella sp W3-18-1

Properties
Regulator type: Transcription factor
TF locus tag: Sputw3181_2713
Regulator family: TyrR
Regulation mode: activator
Biological process: Amino acid utilization
Effector: Tyrosine; Phenylalanine
Regulog: TyrR - Shewanellaceae
Statistics of regulated genes:
- Genes 38
- Operons 19
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 312 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -257
Score: 3.7
Sequence: ATATCAAGTATTTTATCCAC
Position: -114
Score: 4.6
Sequence: GCGTAAGTTTAACTTTACAA
Locus tag: Sputw3181_1983
Name: emrD
Funciton: multidrug resistance protein D
Sputw3181_1983
emrD
multidrug resistance protein D
Position: -352
Score: 3.9
Sequence: ATGTAACCGTATCGTTCCAC
Position: -268
Score: 4
Sequence: ACGTAATGATTAGTTTACGA
Locus tag: Sputw3181_2712
Name: hmgC
Funciton: Fumarylacetoacetase (EC 3.7.1.2)
Locus tag: Sputw3181_2711
Name: hmgB
Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2)
Sputw3181_2712
hmgC
Fumarylacetoacetase (EC 3.7.1.2)
Sputw3181_2711
hmgB
Maleylacetoacetate isomerase (EC 5.2.1.2)
Position: -188
Score: 4.8
Sequence: CTGTAAACTTGACTTGCCAC
Locus tag: Sputw3181_2713
Name: tyrR
Funciton: Transcriptional regulator of aromatic amino acid biosynthesis
Sputw3181_2713
tyrR
Transcriptional regulator of aromatic amino acid biosynthesis
Position: -107
Score: 5.1
Sequence: GTGTAAACATAGATTTGCAC
Locus tag: Sputw3181_3284
Name: brnQ
Funciton: Branched-chain amino acid transport system carrier protein
Sputw3181_3284
brnQ
Branched-chain amino acid transport system carrier protein
Position: -189
Score: 4.4
Sequence: ATGTAAATATTAATTGAGAA
Locus tag: Sputw3181_3978
Name: prlC
Funciton: Oligopeptidase A (EC 3.4.24.70)
Sputw3181_3978
prlC
Oligopeptidase A (EC 3.4.24.70)
Position: -116
Score: 3.9
Sequence: CTGGCAGCCAAAGTTGCCAG
Locus tag: Sputw3181_3221
Name: SO1117
Funciton: peptidase M17, leucyl aminopeptidase
Sputw3181_3221
SO1117
peptidase M17, leucyl aminopeptidase
Position: -194
Score: 4.8
Sequence: TTGTCAATTAAGCGTTACAT
Locus tag: Sputw3181_0845
Name: putA
Funciton: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
Sputw3181_0845
putA
Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
Position: -108
Score: 4.5
Sequence: ATGGCAATTGGGATTGACAC
Locus tag: Sputw3181_2305
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: Sputw3181_2306
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: Sputw3181_2307
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: Sputw3181_2308
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: Sputw3181_2309
Name: liuD
Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Locus tag: Sputw3181_2310
Name: liuE
Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Locus tag: Sputw3181_2311
Name: liuF
Funciton: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)
Locus tag: Sputw3181_2312
Name: liuG
Funciton: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)
Sputw3181_2305
liuR
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Sputw3181_2306
liuA
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Sputw3181_2307
liuB
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Sputw3181_2308
liuC
Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Sputw3181_2309
liuD
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Sputw3181_2310
liuE
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Sputw3181_2311
liuF
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)
Sputw3181_2312
liuG
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)
Position: -298
Score: 4
Sequence: TTGGCAAAAAAGCCTGCCAA
Position: -102
Score: 4.5
Sequence: TTGTAATCTTAACTTGACGC
Locus tag: Sputw3181_1969
Name: aroA
Funciton: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
Sputw3181_1969
aroA
5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
Position: -179
Score: 4.5
Sequence: GTGTAAATAAAAAGTGGCAT
Locus tag: Sputw3181_0260
Name: tdo
Funciton: tryptophan 2,3-dioxygenase
Locus tag: Sputw3181_0261
Name: kyn
Funciton: kynureninase (tryptophan degradation)
Sputw3181_0260
tdo
tryptophan 2,3-dioxygenase
Sputw3181_0261
kyn
kynureninase (tryptophan degradation)
Position: -108
Score: 3.9
Sequence: CTGGCAACTTTGGCTGCCAG
Locus tag: Sputw3181_3222
Name: pepD
Funciton: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3)
Sputw3181_3222
pepD
Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3)
Position: -210
Score: 4.1
Sequence: ATGTAACAAGTTAATTACAC
Locus tag: Sputw3181_2594
Name: mdeA
Funciton: Methionine gamma-lyase (EC 4.4.1.11)
Sputw3181_2594
mdeA
Methionine gamma-lyase (EC 4.4.1.11)
Position: -276
Score: 3.6
Sequence: ATGTTAAGTTTATTTGCCTT
Locus tag: Sputw3181_3384
Name: pep3
Funciton: peptidase, M13 family
Sputw3181_3384
pep3
peptidase, M13 family
Position: -167
Score: 4.3
Sequence: CTGTAAATCCTTACTGACAA
Locus tag: Sputw3181_2704
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: Sputw3181_2703
Name: ivdB
Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: Sputw3181_2702
Name: ivdC
Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: Sputw3181_2701
Name: ivdD
Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: Sputw3181_2700
Name: ivdE
Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: Sputw3181_2699
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: Sputw3181_2698
Name: ivdG
Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
Sputw3181_2704
ivdA
3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Sputw3181_2703
ivdB
Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Sputw3181_2702
ivdC
Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Sputw3181_2701
ivdD
Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Sputw3181_2700
ivdE
3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Sputw3181_2699
ivdF
3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Sputw3181_2698
ivdG
3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
Position: -160
Score: 4.9
Sequence: TTGTAAAGCAATATATACAT
Locus tag: Sputw3181_2123
Name: bkdA1
Funciton: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
Locus tag: Sputw3181_2122
Name: bkdA2
Funciton: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
Locus tag: Sputw3181_2121
Name: bkdB
Funciton: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
Sputw3181_2123
bkdA1
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
Sputw3181_2122
bkdA2
Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
Sputw3181_2121
bkdB
Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
Position: -122
Score: 4.4
Sequence: TTGTAATATTTGCTTTACGT
Locus tag: Sputw3181_2715
Name: phhA
Funciton: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Locus tag: Sputw3181_2714
Name: phhB
Funciton: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
Sputw3181_2715
phhA
Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Sputw3181_2714
phhB
Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
Position: -303
Score: 4.5
Sequence: GTGTAATTATAAATTTACTT
Locus tag: Sputw3181_2866
Name: aceB
Funciton: Malate synthase (EC 2.3.3.9)
Locus tag: Sputw3181_2865
Name: aceA
Funciton: Isocitrate lyase (EC 4.1.3.1)
Sputw3181_2866
aceB
Malate synthase (EC 2.3.3.9)
Sputw3181_2865
aceA
Isocitrate lyase (EC 4.1.3.1)
Position: -155
Score: 5.2
Sequence: GTGGAAAGCTAAATTGCCAC
Locus tag: Sputw3181_1771
Name: ldh
Funciton: Leucine dehydrogenase (EC 1.4.1.9)
Sputw3181_1771
ldh
Leucine dehydrogenase (EC 1.4.1.9)
Position: -156
Score: 4
Sequence: TTGGCAGGCTTTTTTGCCAA
Locus tag: Sputw3181_1967
Name: tyrB
Funciton: Tyrosine aminotransferase (EC 2.6.1.42)
Sputw3181_1967
tyrB
Tyrosine aminotransferase (EC 2.6.1.42)
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