Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of TyrR in Shewanella halifaxensis HAW-EB4

Properties
Regulator type: Transcription factor
TF locus tag: Shal_1533
Regulator family: TyrR
Regulation mode: activator
Biological process: Amino acid utilization
Effector: Tyrosine; Phenylalanine
Regulog: TyrR - Shewanellaceae
Statistics of regulated genes:
- Genes 33
- Operons 14
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 312 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -183
Score: 4.7
Sequence: CTGTAAGTATAAGTTTACAA
Locus tag: Shal_1534
Name: hmgC
Funciton: Fumarylacetoacetase (EC 3.7.1.2)
Locus tag: Shal_1535
Name: hmgB
Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2)
Shal_1534
hmgC
Fumarylacetoacetase (EC 3.7.1.2)
Shal_1535
hmgB
Maleylacetoacetate isomerase (EC 5.2.1.2)
Position: -94
Score: 5.1
Sequence: GTGTAAACTAATCATTACAC
Locus tag: Shal_0859
Name: brnQ
Funciton: Branched-chain amino acid transport system carrier protein
Shal_0859
brnQ
Branched-chain amino acid transport system carrier protein
Position: -160
Score: 4.6
Sequence: GTGGAAACTTTGCCTGACAA
Locus tag: Shal_3175
Name: pepD
Funciton: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3)
Shal_3175
pepD
Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3)
Position: -110
Score: 4.4
Sequence: GTGGCAAGCGCGATTGACAT
Locus tag: Shal_2901
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: Shal_2902
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: Shal_2903
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: Shal_2904
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: Shal_2905
Name: liuD
Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Locus tag: Shal_2906
Name: liuD
Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Locus tag: Shal_2907
Name: liuE
Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Locus tag: Shal_2908
Name: liuF
Funciton: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)
Locus tag: Shal_2909
Name: liuG
Funciton: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)
Shal_2901
liuR
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Shal_2902
liuA
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Shal_2903
liuB
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Shal_2904
liuC
Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Shal_2905
liuD
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Shal_2906
liuD
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Shal_2907
liuE
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Shal_2908
liuF
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)
Shal_2909
liuG
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)
Position: -159
Score: 4.1
Sequence: CTGTAAACAAGCCTTGCCAC
Locus tag: Shal_1533
Name: tyrR
Funciton: Transcriptional regulator of aromatic amino acid biosynthesis
Shal_1533
tyrR
Transcriptional regulator of aromatic amino acid biosynthesis
Position: -458
Score: 4.1
Sequence: aTGTAAAagTAtATTgACgC
Locus tag: Shal_1352
Name: aceB
Funciton: Malate synthase (EC 2.3.3.9)
Shal_1352
aceB
Malate synthase (EC 2.3.3.9)
Position: -157
Score: 4.9
Sequence: GTGGAAAGCAAAATTGCCAG
Locus tag: Shal_1711
Name: ldh
Funciton: Leucine dehydrogenase (EC 1.4.1.9)
Shal_1711
ldh
Leucine dehydrogenase (EC 1.4.1.9)
Position: -105
Score: 3.9
Sequence: AAGTAAAGCATGCTTGACTT
Position: -61
Score: 4.5
Sequence: AAGTCAAGCTTACTTTACAT
Locus tag: Shal_4179
Name: Sfri_3409
Funciton: hypothetical protein
Locus tag: Shal_4180
Name: Sfri_3410
Funciton: transcriptional regulator, XRE family protein
Shal_4179
Sfri_3409
hypothetical protein
Shal_4180
Sfri_3410
transcriptional regulator, XRE family protein
Position: -214
Score: 4.4
Sequence: TTGTAACATTCAGTTTACAA
Locus tag: Shal_2751
Name: mdeA
Funciton: Methionine gamma-lyase (EC 4.4.1.11)
Shal_2751
mdeA
Methionine gamma-lyase (EC 4.4.1.11)
Position: -202
Score: 3.9
Sequence: TAGGAAACCTTTTCTTACAC
Locus tag: Shal_3258
Name: pep3
Funciton: peptidase, M13 family
Shal_3258
pep3
peptidase, M13 family
Position: -133
Score: 4.3
Sequence: GTGTAACAACTTCGTTACAC
Locus tag: Shal_1531
Name: phhA
Funciton: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Locus tag: Shal_1532
Name: phhB
Funciton: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
Shal_1531
phhA
Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Shal_1532
phhB
Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
Position: -231
Score: 4.4
Sequence: GTGTAAATCCTTTGTGACAT
Locus tag: Shal_2878
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: Shal_2877
Name: ivdB
Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: Shal_2876
Name: ivdC
Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: Shal_2875
Name: ivdD
Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: Shal_2874
Name: ivdE
Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: Shal_2873
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: Shal_2872
Name: ivdG
Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
Shal_2878
ivdA
3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Shal_2877
ivdB
Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Shal_2876
ivdC
Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Shal_2875
ivdD
Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Shal_2874
ivdE
3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Shal_2873
ivdF
3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Shal_2872
ivdG
3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
Position: -161
Score: 4.8
Sequence: ATGTAAACCAATATATACAT
Locus tag: Shal_2234
Name: bkdA1
Funciton: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
Locus tag: Shal_2233
Name: bkdA2
Funciton: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
Locus tag: Shal_2232
Name: bkdB
Funciton: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
Shal_2234
bkdA1
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
Shal_2233
bkdA2
Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
Shal_2232
bkdB
Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
Position: -243
Score: 3.4
Sequence: TCGTAGATATAAAGTTACTC
Locus tag: Shal_2042
Name: tyrB
Funciton: Tyrosine aminotransferase (EC 2.6.1.42)
Shal_2042
tyrB
Tyrosine aminotransferase (EC 2.6.1.42)
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