Regulon of TyrR in Shewanella halifaxensis HAW-EB4
| Regulator type: | Transcription factor |
| TF locus tag: | Shal_1533 |
| Regulator family: | TyrR |
| Regulation mode: | activator |
| Biological process: | Amino acid utilization |
| Effector: | Tyrosine; Phenylalanine |
| Regulog: | TyrR - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 33 |
| - Operons | 14 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - TyrR
- By TF family - TyrR
- By effector - Tyrosine
- By effector - Phenylalanine
- By pathway - Amino acid utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -183
Score: 4.7 Sequence: CTGTAAGTATAAGTTTACAA
Locus tag: Shal_1534
Name: hmgC Funciton: Fumarylacetoacetase (EC 3.7.1.2)
Locus tag: Shal_1535
Name: hmgB Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2) |
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hmgC
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Fumarylacetoacetase (EC 3.7.1.2)
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hmgB
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Maleylacetoacetate isomerase (EC 5.2.1.2)
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Position: -94
Score: 5.1 Sequence: GTGTAAACTAATCATTACAC
Locus tag: Shal_0859
Name: brnQ Funciton: Branched-chain amino acid transport system carrier protein |
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brnQ
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Branched-chain amino acid transport system carrier protein
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Position: -160
Score: 4.6 Sequence: GTGGAAACTTTGCCTGACAA
Locus tag: Shal_3175
Name: pepD Funciton: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) |
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pepD
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Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3)
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Position: -110
Score: 4.4 Sequence: GTGGCAAGCGCGATTGACAT
Locus tag: Shal_2901
Name: liuR Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: Shal_2902
Name: liuA Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: Shal_2903
Name: liuB Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: Shal_2904
Name: liuC Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: Shal_2905
Name: liuD Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Locus tag: Shal_2906
Name: liuD Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Locus tag: Shal_2907
Name: liuE Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Locus tag: Shal_2908
Name: liuF Funciton: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)
Locus tag: Shal_2909
Name: liuG Funciton: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) |
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liuR
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Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
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liuA
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Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
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liuB
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Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
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liuC
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Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
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liuD
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Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
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liuD
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Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
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liuE
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Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
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liuF
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Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)
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liuG
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Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)
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Position: -159
Score: 4.1 Sequence: CTGTAAACAAGCCTTGCCAC
Locus tag: Shal_1533
Name: tyrR Funciton: Transcriptional regulator of aromatic amino acid biosynthesis |
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tyrR
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Transcriptional regulator of aromatic amino acid biosynthesis
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Position: -458
Score: 4.1 Sequence: aTGTAAAagTAtATTgACgC
Locus tag: Shal_1352
Name: aceB Funciton: Malate synthase (EC 2.3.3.9) |
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aceB
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Malate synthase (EC 2.3.3.9)
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Position: -157
Score: 4.9 Sequence: GTGGAAAGCAAAATTGCCAG
Locus tag: Shal_1711
Name: ldh Funciton: Leucine dehydrogenase (EC 1.4.1.9) |
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ldh
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Leucine dehydrogenase (EC 1.4.1.9)
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Position: -105
Score: 3.9 Sequence: AAGTAAAGCATGCTTGACTT
Position: -61
Score: 4.5 Sequence: AAGTCAAGCTTACTTTACAT
Locus tag: Shal_4179
Name: Sfri_3409 Funciton: hypothetical protein
Locus tag: Shal_4180
Name: Sfri_3410 Funciton: transcriptional regulator, XRE family protein |
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Sfri_3409
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hypothetical protein
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Sfri_3410
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transcriptional regulator, XRE family protein
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Position: -214
Score: 4.4 Sequence: TTGTAACATTCAGTTTACAA
Locus tag: Shal_2751
Name: mdeA Funciton: Methionine gamma-lyase (EC 4.4.1.11) |
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mdeA
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Methionine gamma-lyase (EC 4.4.1.11)
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Position: -202
Score: 3.9 Sequence: TAGGAAACCTTTTCTTACAC
Locus tag: Shal_3258
Name: pep3 Funciton: peptidase, M13 family |
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pep3
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peptidase, M13 family
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Position: -133
Score: 4.3 Sequence: GTGTAACAACTTCGTTACAC
Locus tag: Shal_1531
Name: phhA Funciton: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Locus tag: Shal_1532
Name: phhB Funciton: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
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phhA
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Phenylalanine-4-hydroxylase (EC 1.14.16.1)
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phhB
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Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
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Position: -231
Score: 4.4 Sequence: GTGTAAATCCTTTGTGACAT
Locus tag: Shal_2878
Name: ivdA Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: Shal_2877
Name: ivdB Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: Shal_2876
Name: ivdC Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: Shal_2875
Name: ivdD Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: Shal_2874
Name: ivdE Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: Shal_2873
Name: ivdF Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: Shal_2872
Name: ivdG Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
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ivdA
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3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
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ivdB
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Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
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ivdC
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Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
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ivdD
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Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
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ivdE
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3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
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ivdF
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3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
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ivdG
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3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
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Position: -161
Score: 4.8 Sequence: ATGTAAACCAATATATACAT
Locus tag: Shal_2234
Name: bkdA1 Funciton: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
Locus tag: Shal_2233
Name: bkdA2 Funciton: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
Locus tag: Shal_2232
Name: bkdB Funciton: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) |
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bkdA1
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Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
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bkdA2
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Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
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bkdB
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Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
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Position: -243
Score: 3.4 Sequence: TCGTAGATATAAAGTTACTC
Locus tag: Shal_2042
Name: tyrB Funciton: Tyrosine aminotransferase (EC 2.6.1.42) |
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tyrB
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Tyrosine aminotransferase (EC 2.6.1.42)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |