Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of TyrR in Shewanella baltica OS155

Properties
Regulator type: Transcription factor
TF locus tag: Sbal_1486
Regulator family: TyrR
Regulation mode: activator
Biological process: Amino acid utilization
Effector: Tyrosine; Phenylalanine
Regulog: TyrR - Shewanellaceae
Statistics of regulated genes:
- Genes 38
- Operons 19
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 312 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -159
Score: 4.6
Sequence: GTGTAAATAAAAAATGGCAT
Locus tag: Sbal_0303
Name: tdo
Funciton: tryptophan 2,3-dioxygenase
Locus tag: Sbal_0304
Name: kyn
Funciton: kynureninase (tryptophan degradation)
Sbal_0303
tdo
tryptophan 2,3-dioxygenase
Sbal_0304
kyn
kynureninase (tryptophan degradation)
Position: -116
Score: 4
Sequence: CTGGCAGCCAAAGTTTCCAG
Locus tag: Sbal_0941
Name: SO1117
Funciton: peptidase M17, leucyl aminopeptidase
Sbal_0941
SO1117
peptidase M17, leucyl aminopeptidase
Position: -380
Score: 3.6
Sequence: CTGTATTAATATATTTACTG
Locus tag: Sbal_1316
Name: aceB
Funciton: Malate synthase (EC 2.3.3.9)
Locus tag: Sbal_1317
Name: aceA
Funciton: Isocitrate lyase (EC 4.1.3.1)
Sbal_1316
aceB
Malate synthase (EC 2.3.3.9)
Sbal_1317
aceA
Isocitrate lyase (EC 4.1.3.1)
Position: -136
Score: 4.8
Sequence: TTGTAAATCAAGTGTTACAT
Locus tag: Sbal_3200
Name: pep1
Funciton: Alkaline serine exoprotease A precursor (EC 3.4.21.-)
Sbal_3200
pep1
Alkaline serine exoprotease A precursor (EC 3.4.21.-)
Position: -107
Score: 5.1
Sequence: GTGTAAACAAAGATTTGCAC
Locus tag: Sbal_0842
Name: brnQ
Funciton: Branched-chain amino acid transport system carrier protein
Sbal_0842
brnQ
Branched-chain amino acid transport system carrier protein
Position: -194
Score: 4.8
Sequence: TTGTCAATCAAGCGTTACAT
Locus tag: Sbal_3458
Name: putA
Funciton: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
Sbal_3458
putA
Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
Position: -196
Score: 4.7
Sequence: CTGTAAACTAGGCTTGCCAC
Locus tag: Sbal_1486
Name: tyrR
Funciton: Transcriptional regulator of aromatic amino acid biosynthesis
Sbal_1486
tyrR
Transcriptional regulator of aromatic amino acid biosynthesis
Position: -358
Score: 3.8
Sequence: ATGTAACAGTATCGTTCCAC
Position: -274
Score: 4
Sequence: ACGTAATGATTAGTTTACGA
Locus tag: Sbal_1487
Name: hmgC
Funciton: Fumarylacetoacetase (EC 3.7.1.2)
Locus tag: Sbal_1488
Name: hmgB
Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2)
Sbal_1487
hmgC
Fumarylacetoacetase (EC 3.7.1.2)
Sbal_1488
hmgB
Maleylacetoacetate isomerase (EC 5.2.1.2)
Position: -108
Score: 4.5
Sequence: ATGGCAATTGGGATTGACAC
Locus tag: Sbal_2827
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: Sbal_2828
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: Sbal_2829
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: Sbal_2830
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: Sbal_2831
Name: liuD
Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Locus tag: Sbal_2832
Name: liuE
Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Locus tag: Sbal_2833
Name: liuF
Funciton: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)
Locus tag: Sbal_2834
Name: liuG
Funciton: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)
Sbal_2827
liuR
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Sbal_2828
liuA
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Sbal_2829
liuB
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Sbal_2830
liuC
Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Sbal_2831
liuD
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Sbal_2832
liuE
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Sbal_2833
liuF
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)
Sbal_2834
liuG
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)
Position: -299
Score: 4
Sequence: TTGGCAAAAAAGCCTGCCAA
Position: -102
Score: 4.5
Sequence: TTGTAATCTTAACTTGACGC
Position: -81
Score: 3.7
Sequence: GTGTAGCGTGAAGTTGCCAT
Locus tag: Sbal_2068
Name: aroA
Funciton: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
Sbal_2068
aroA
5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
Position: -154
Score: 4.4
Sequence: ACGTAAGTTTAGCTTTACAG
Locus tag: Sbal_2085
Name: emrD
Funciton: multidrug resistance protein D
Sbal_2085
emrD
multidrug resistance protein D
Position: -123
Score: 4
Sequence: CTGGAAACTTTGGCTGCCAG
Locus tag: Sbal_0940
Name: pepD
Funciton: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3)
Sbal_0940
pepD
Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3)
Position: -156
Score: 4
Sequence: TTGGCAGGCTTTTTTGCCAA
Locus tag: Sbal_2067
Name: tyrB
Funciton: Tyrosine aminotransferase (EC 2.6.1.42)
Sbal_2067
tyrB
Tyrosine aminotransferase (EC 2.6.1.42)
Position: -160
Score: 4.9
Sequence: TTGTAAAGCAATATATACAT
Locus tag: Sbal_4508
Name: bkdA1
Funciton: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
Locus tag: Sbal_4507
Name: bkdA2
Funciton: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
Locus tag: Sbal_4506
Name: bkdB
Funciton: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
Sbal_4508
bkdA1
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
Sbal_4507
bkdA2
Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
Sbal_4506
bkdB
Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
Position: -199
Score: 4.1
Sequence: ATGTAACAAGTTAATTACAC
Locus tag: Sbal_1622
Name: mdeA
Funciton: Methionine gamma-lyase (EC 4.4.1.11)
Sbal_1622
mdeA
Methionine gamma-lyase (EC 4.4.1.11)
Position: -122
Score: 4.4
Sequence: TTGTAATATTTGCTTTACGT
Locus tag: Sbal_1484
Name: phhA
Funciton: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Locus tag: Sbal_1485
Name: phhB
Funciton: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
Sbal_1484
phhA
Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Sbal_1485
phhB
Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
Position: -173
Score: 4
Sequence: CTGGTAACCTTTAGTTACAT
Locus tag: Sbal_0685
Name: pep3
Funciton: peptidase, M13 family
Sbal_0685
pep3
peptidase, M13 family
Position: -162
Score: 4.3
Sequence: CTGTAAATCCTTACTGACAT
Locus tag: Sbal_1495
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: Sbal_1496
Name: ivdB
Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: Sbal_1497
Name: ivdC
Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: Sbal_1498
Name: ivdD
Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: Sbal_1499
Name: ivdE
Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: Sbal_1500
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: Sbal_1501
Name: ivdG
Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
Sbal_1495
ivdA
3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Sbal_1496
ivdB
Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Sbal_1497
ivdC
Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Sbal_1498
ivdD
Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Sbal_1499
ivdE
3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Sbal_1500
ivdF
3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Sbal_1501
ivdG
3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
Position: -134
Score: 5.2
Sequence: GTGGAAAGCTAAATTGCCAC
Locus tag: Sbal_2483
Name: ldh
Funciton: Leucine dehydrogenase (EC 1.4.1.9)
Sbal_2483
ldh
Leucine dehydrogenase (EC 1.4.1.9)
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