Regulon of TyrR in Shewanella putrefaciens CN-32

Properties
Regulator type:	Transcription factor
TF locus tag:	Sputcn32_1388
Regulator family:	TyrR
Regulation mode:	activator
Biological process:	Amino acid utilization
Effector:	Tyrosine; Phenylalanine
Regulog:	TyrR - Shewanellaceae
Statistics of regulated genes:
- Genes	38
- Operons	19
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 312 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - TyrR
By TF family - TyrR
By effector - Tyrosine
By effector - Phenylalanine
By pathway - Amino acid utilization

Regulated operons
	Locus Tag	Name	Function
Position: -108 Score: 4.5 Sequence: ATGGCAATTGGGATTGACAC Locus tag: Sputcn32_1720 Name: liuR Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family Locus tag: Sputcn32_1719 Name: liuA Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) Locus tag: Sputcn32_1718 Name: liuB Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) Locus tag: Sputcn32_1717 Name: liuC Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) Locus tag: Sputcn32_1716 Name: liuD Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) Locus tag: Sputcn32_1715 Name: liuE Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) Locus tag: Sputcn32_1714 Name: liuF Funciton: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) Locus tag: Sputcn32_1713 Name: liuG Funciton: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)
	Sputcn32_1720	liuR	Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
	Sputcn32_1719	liuA	Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
	Sputcn32_1718	liuB	Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
	Sputcn32_1717	liuC	Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
	Sputcn32_1716	liuD	Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
	Sputcn32_1715	liuE	Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
	Sputcn32_1714	liuF	Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)
	Sputcn32_1713	liuG	Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)
Position: -257 Score: 3.7 Sequence: ATATCAAGTATTTTATCCAC Position: -114 Score: 4.6 Sequence: GCGTAAGTTTAACTTTACAA Locus tag: Sputcn32_2030 Name: emrD Funciton: multidrug resistance protein D
	Sputcn32_2030	emrD	multidrug resistance protein D
Position: -189 Score: 4.4 Sequence: ATGTAAATATTAATTGAGAA Locus tag: Sputcn32_0087 Name: prlC Funciton: Oligopeptidase A (EC 3.4.24.70)
	Sputcn32_0087	prlC	Oligopeptidase A (EC 3.4.24.70)
Position: -108 Score: 3.9 Sequence: CTGGCAACTTTGGCTGCCAG Locus tag: Sputcn32_0954 Name: pepD Funciton: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3)
	Sputcn32_0954	pepD	Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3)
Position: -352 Score: 3.9 Sequence: ATGTAACCGTATCGTTCCAC Position: -268 Score: 4 Sequence: ACGTAATGATTAGTTTACGA Locus tag: Sputcn32_1389 Name: hmgC Funciton: Fumarylacetoacetase (EC 3.7.1.2) Locus tag: Sputcn32_1390 Name: hmgB Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2)
	Sputcn32_1389	hmgC	Fumarylacetoacetase (EC 3.7.1.2)
	Sputcn32_1390	hmgB	Maleylacetoacetate isomerase (EC 5.2.1.2)
Position: -188 Score: 4.8 Sequence: CTGTAAACTTGACTTGCCAC Locus tag: Sputcn32_1388 Name: tyrR Funciton: Transcriptional regulator of aromatic amino acid biosynthesis
	Sputcn32_1388	tyrR	Transcriptional regulator of aromatic amino acid biosynthesis
Position: -107 Score: 5.1 Sequence: GTGTAAACATAGATTTGCAC Locus tag: Sputcn32_0889 Name: brnQ Funciton: Branched-chain amino acid transport system carrier protein
	Sputcn32_0889	brnQ	Branched-chain amino acid transport system carrier protein
Position: -116 Score: 3.9 Sequence: CTGGCAGCCAAAGTTGCCAG Locus tag: Sputcn32_0955 Name: SO1117 Funciton: peptidase M17, leucyl aminopeptidase
	Sputcn32_0955	SO1117	peptidase M17, leucyl aminopeptidase
Position: -194 Score: 4.8 Sequence: TTGTCAATTAAGCGTTACAT Locus tag: Sputcn32_3099 Name: putA Funciton: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
	Sputcn32_3099	putA	Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
Position: -299 Score: 4 Sequence: TTGGCAAAAAAGCCTGCCAA Position: -102 Score: 4.5 Sequence: TTGTAATCTTAACTTGACGC Locus tag: Sputcn32_2044 Name: aroA Funciton: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
	Sputcn32_2044	aroA	5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
Position: -179 Score: 4.5 Sequence: GTGTAAATAAAAAGTGGCAT Locus tag: Sputcn32_0406 Name: tdo Funciton: tryptophan 2,3-dioxygenase Locus tag: Sputcn32_0407 Name: kyn Funciton: kynureninase (tryptophan degradation)
	Sputcn32_0406	tdo	tryptophan 2,3-dioxygenase
	Sputcn32_0407	kyn	kynureninase (tryptophan degradation)
Position: -210 Score: 4.1 Sequence: ATGTAACAAGTTAATTACAC Locus tag: Sputcn32_1507 Name: mdeA Funciton: Methionine gamma-lyase (EC 4.4.1.11)
	Sputcn32_1507	mdeA	Methionine gamma-lyase (EC 4.4.1.11)
Position: -276 Score: 3.6 Sequence: ATGTTAAGTTTATTTGCCTT Locus tag: Sputcn32_0791 Name: pep3 Funciton: peptidase, M13 family
	Sputcn32_0791	pep3	peptidase, M13 family
Position: -304 Score: 4.7 Sequence: GTGTAATTATAAATTTACGT Locus tag: Sputcn32_1238 Name: aceB Funciton: Malate synthase (EC 2.3.3.9) Locus tag: Sputcn32_1239 Name: aceA Funciton: Isocitrate lyase (EC 4.1.3.1)
	Sputcn32_1238	aceB	Malate synthase (EC 2.3.3.9)
	Sputcn32_1239	aceA	Isocitrate lyase (EC 4.1.3.1)
Position: -167 Score: 4.3 Sequence: CTGTAAATCCTTACTGACAA Locus tag: Sputcn32_1397 Name: ivdA Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) Locus tag: Sputcn32_1398 Name: ivdB Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) Locus tag: Sputcn32_1399 Name: ivdC Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) Locus tag: Sputcn32_1400 Name: ivdD Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) Locus tag: Sputcn32_1401 Name: ivdE Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) Locus tag: Sputcn32_1402 Name: ivdF Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) Locus tag: Sputcn32_1403 Name: ivdG Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
	Sputcn32_1397	ivdA	3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
	Sputcn32_1398	ivdB	Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
	Sputcn32_1399	ivdC	Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
	Sputcn32_1400	ivdD	Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
	Sputcn32_1401	ivdE	3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
	Sputcn32_1402	ivdF	3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
	Sputcn32_1403	ivdG	3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
Position: -122 Score: 4.4 Sequence: TTGTAATATTTGCTTTACGT Locus tag: Sputcn32_1386 Name: phhA Funciton: Phenylalanine-4-hydroxylase (EC 1.14.16.1) Locus tag: Sputcn32_1387 Name: phhB Funciton: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
	Sputcn32_1386	phhA	Phenylalanine-4-hydroxylase (EC 1.14.16.1)
	Sputcn32_1387	phhB	Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
Position: -155 Score: 5.2 Sequence: GTGGAAAGCTAAATTGCCAC Locus tag: Sputcn32_2238 Name: ldh Funciton: Leucine dehydrogenase (EC 1.4.1.9)
	Sputcn32_2238	ldh	Leucine dehydrogenase (EC 1.4.1.9)
Position: -160 Score: 4.9 Sequence: TTGTAAAGCAATATATACAT Locus tag: Sputcn32_1885 Name: bkdA1 Funciton: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) Locus tag: Sputcn32_1886 Name: bkdA2 Funciton: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) Locus tag: Sputcn32_1887 Name: bkdB Funciton: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
	Sputcn32_1885	bkdA1	Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
	Sputcn32_1886	bkdA2	Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
	Sputcn32_1887	bkdB	Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
Position: -156 Score: 4 Sequence: TTGGCAGGCTTTTTTGCCAA Locus tag: Sputcn32_2045 Name: tyrB Funciton: Tyrosine aminotransferase (EC 2.6.1.42)
	Sputcn32_2045	tyrB	Tyrosine aminotransferase (EC 2.6.1.42)

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of TyrR in Shewanella putrefaciens CN-32

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --