Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of TyrR in Shewanella piezotolerans WP3

Properties
Regulator type: Transcription factor
TF locus tag: swp_1652
Regulator family: TyrR
Regulation mode: activator
Biological process: Amino acid utilization
Effector: Tyrosine; Phenylalanine
Regulog: TyrR - Shewanellaceae
Statistics of regulated genes:
- Genes 33
- Operons 16
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 312 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -171
Score: 4
Sequence: ACGTAAAGAAATCTGTCCAC
Locus tag: swp_3159
Name: aprE
Funciton: Alkaline serine protease
swp_3159
aprE
Alkaline serine protease
Position: -153
Score: 5
Sequence: GTGTAAACCAAATATTACAC
Locus tag: swp_4229
Name: brnQ
Funciton: Branched-chain amino acid transport system carrier protein
swp_4229
brnQ
Branched-chain amino acid transport system carrier protein
Position: -179
Score: 4.8
Sequence: CTGTAATTATATGTTTACAA
Locus tag: swp_1653
Name: hmgC
Funciton: Fumarylacetoacetase (EC 3.7.1.2)
Locus tag: swp_1654
Name: hmgB
Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2)
swp_1653
hmgC
Fumarylacetoacetase (EC 3.7.1.2)
swp_1654
hmgB
Maleylacetoacetate isomerase (EC 5.2.1.2)
Position: -76
Score: 4.2
Sequence: TTGGCACGCACAATTGACAT
Locus tag: swp_3441
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: swp_3442
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: swp_3443
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: swp_3444
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: swp_3445
Name: liuD
Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Locus tag: swp_3446
Name: liuD
Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Locus tag: swp_3448
Name: liuE
Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
swp_3441
liuR
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
swp_3442
liuA
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
swp_3443
liuB
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
swp_3444
liuC
Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
swp_3445
liuD
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
swp_3446
liuD
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
swp_3448
liuE
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Position: -309
Score: 4.6
Sequence: cTGTAAAcaagtCTTgcCAC
Locus tag: swp_1652
Name: tyrR
Funciton: Transcriptional regulator of aromatic amino acid biosynthesis
swp_1652
tyrR
Transcriptional regulator of aromatic amino acid biosynthesis
Position: -158
Score: 4.8
Sequence: GTGGAAAGCAGAATTGCCAC
Locus tag: swp_1857
Name: ldh
Funciton: Leucine dehydrogenase (EC 1.4.1.9)
swp_1857
ldh
Leucine dehydrogenase (EC 1.4.1.9)
Position: -47
Score: 4.4
Sequence: AAGTAAAGCTCACTTTACAA
Locus tag: swp_0181
Name: Sfri_3409
Funciton: hypothetical protein
Locus tag: swp_0180
Name: Sfri_3410
Funciton: transcriptional regulator, XRE family protein
swp_0181
Sfri_3409
hypothetical protein
swp_0180
Sfri_3410
transcriptional regulator, XRE family protein
Position: -106
Score: 4
Sequence: GTGTCAGCAGAAGTTGCCAT
Locus tag: swp_1181
Name: SO1117
Funciton: peptidase M17, leucyl aminopeptidase
swp_1181
SO1117
peptidase M17, leucyl aminopeptidase
Position: -140
Score: 4
Sequence: ATGGCAACTTCTGCTGACAC
Locus tag: swp_1180
Name: pepD
Funciton: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3)
swp_1180
pepD
Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3)
Position: -242
Score: 4.1
Sequence: ACGTAACATATATTTTACAA
Locus tag: swp_3243
Name: mdeA
Funciton: Methionine gamma-lyase (EC 4.4.1.11)
swp_3243
mdeA
Methionine gamma-lyase (EC 4.4.1.11)
Position: -189
Score: 3.9
Sequence: TAGGAAACCTTTTCTTACAC
Locus tag: swp_3866
Name: pep3
Funciton: peptidase, M13 family
swp_3866
pep3
peptidase, M13 family
Position: -188
Score: 4.6
Sequence: CTGTAAATTATGGCTTACAA
Position: -123
Score: 4.5
Sequence: ATGTAAACTTATGGTTACGC
Locus tag: swp_1650
Name: phhA
Funciton: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Locus tag: swp_1651
Name: phhB
Funciton: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
swp_1650
phhA
Phenylalanine-4-hydroxylase (EC 1.14.16.1)
swp_1651
phhB
Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
Position: -75
Score: 3.8
Sequence: TTTTAAGTTGATGTTTACAC
Locus tag: swp_3387
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: swp_3386
Name: ivdB
Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: swp_3385
Name: ivdC
Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: swp_3384
Name: ivdD
Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: swp_3383
Name: ivdE
Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: swp_3382
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: swp_3381
Name: ivdG
Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
swp_3387
ivdA
3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
swp_3386
ivdB
Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
swp_3385
ivdC
Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
swp_3384
ivdD
Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
swp_3383
ivdE
3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
swp_3382
ivdF
3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
swp_3381
ivdG
3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
Position: -412
Score: 4.2
Sequence: CTGTATTTATAATATTACAC
Locus tag: swp_1433
Name: aceB
Funciton: Malate synthase (EC 2.3.3.9)
swp_1433
aceB
Malate synthase (EC 2.3.3.9)
Position: -162
Score: 4.8
Sequence: ATGTAAACCAATATATACAT
Locus tag: swp_2606
Name: bkdA1
Funciton: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
Locus tag: swp_2605
Name: bkdA2
Funciton: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
Locus tag: swp_2604
Name: bkdB
Funciton: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
swp_2606
bkdA1
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
swp_2605
bkdA2
Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
swp_2604
bkdB
Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
Position: -147
Score: 4.2
Sequence: TTGGAATCAATAATTGCCAG
Locus tag: swp_2486
Name: tyrB
Funciton: Tyrosine aminotransferase (EC 2.6.1.42)
swp_2486
tyrB
Tyrosine aminotransferase (EC 2.6.1.42)
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