Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of TyrR in Shewanella frigidimarina NCIMB 400

Properties
Regulator type: Transcription factor
TF locus tag: Sfri_1330
Regulator family: TyrR
Regulation mode: activator
Biological process: Amino acid utilization
Effector: Tyrosine; Phenylalanine
Regulog: TyrR - Shewanellaceae
Statistics of regulated genes:
- Genes 34
- Operons 15
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 312 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -117
Score: 4.7
Sequence: GTGGCAAGCAAAATTAACAC
Locus tag: Sfri_2726
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: Sfri_2727
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: Sfri_2728
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: Sfri_2729
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: Sfri_2730
Name: liuD
Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Locus tag: Sfri_2731
Name: liuE
Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Locus tag: Sfri_2732
Name: liuF
Funciton: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)
Locus tag: Sfri_2733
Name: liuG
Funciton: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)
Sfri_2726
liuR
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Sfri_2727
liuA
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Sfri_2728
liuB
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Sfri_2729
liuC
Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Sfri_2730
liuD
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Sfri_2731
liuE
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Sfri_2732
liuF
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)
Sfri_2733
liuG
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)
Position: -155
Score: 4.9
Sequence: TTGTAACGAATAATTTACAA
Locus tag: Sfri_1331
Name: hmgC
Funciton: Fumarylacetoacetase (EC 3.7.1.2)
Locus tag: Sfri_1332
Name: hmgB
Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2)
Sfri_1331
hmgC
Fumarylacetoacetase (EC 3.7.1.2)
Sfri_1332
hmgB
Maleylacetoacetate isomerase (EC 5.2.1.2)
Position: -92
Score: 4.7
Sequence: CTGTAAACTTCACTTGCCAC
Locus tag: Sfri_1330
Name: tyrR
Funciton: Transcriptional regulator of aromatic amino acid biosynthesis
Sfri_1330
tyrR
Transcriptional regulator of aromatic amino acid biosynthesis
Position: -122
Score: 4.8
Sequence: GTGTATTTTTAACTTTACAA
Locus tag: Sfri_0662
Name: brnQ
Funciton: Branched-chain amino acid transport system carrier protein
Sfri_0662
brnQ
Branched-chain amino acid transport system carrier protein
Position: -297
Score: 5.1
Sequence: GTGTAAACCAATAGTTACAC
Locus tag: Sfri_3096
Name: omp2
Funciton: putative TonB-dependent outer membrane receptor
Sfri_3096
omp2
putative TonB-dependent outer membrane receptor
Position: -328
Score: 4.3
Sequence: TTGGAAAGTTAACGTAACAA
Position: -107
Score: 4.1
Sequence: CTGTAATGAATTTGTTCCAC
Locus tag: Sfri_2125
Name: aroA
Funciton: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
Sfri_2125
aroA
5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
Position: -99
Score: 4.7
Sequence: AAGTAAAGCTTACTTGACAC
Position: -55
Score: 4.3
Sequence: AAGTCAAGCTTAGTTGACAT
Locus tag: Sfri_3409
Name: Sfri_3409
Funciton: hypothetical protein
Locus tag: Sfri_3410
Name: Sfri_3410
Funciton: transcriptional regulator, XRE family protein
Sfri_3409
Sfri_3409
hypothetical protein
Sfri_3410
Sfri_3410
transcriptional regulator, XRE family protein
Position: -148
Score: 4.7
Sequence: TTGTAAAATTGTTTTTACAT
Locus tag: Sfri_1369
Name: mdeA
Funciton: Methionine gamma-lyase (EC 4.4.1.11)
Sfri_1369
mdeA
Methionine gamma-lyase (EC 4.4.1.11)
Position: -333
Score: 4.7
Sequence: CTGCAAAAATATCTTTACAC
Locus tag: Sfri_2692
Name: aprE
Funciton: Alkaline serine protease
Sfri_2692
aprE
Alkaline serine protease
Position: -140
Score: 4.1
Sequence: CTGTAAATCTTCACTGACAA
Locus tag: Sfri_1338
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: Sfri_1339
Name: ivdB
Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: Sfri_1340
Name: ivdC
Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: Sfri_1341
Name: ivdD
Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: Sfri_1342
Name: ivdE
Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: Sfri_1343
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: Sfri_1344
Name: ivdG
Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
Sfri_1338
ivdA
3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Sfri_1339
ivdB
Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Sfri_1340
ivdC
Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Sfri_1341
ivdD
Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Sfri_1342
ivdE
3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Sfri_1343
ivdF
3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Sfri_1344
ivdG
3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
Position: -178
Score: 5.2
Sequence: GTGGCAAGCTAAATTTCCAC
Locus tag: Sfri_2265
Name: ldh
Funciton: Leucine dehydrogenase (EC 1.4.1.9)
Sfri_2265
ldh
Leucine dehydrogenase (EC 1.4.1.9)
Position: -458
Score: 4.4
Sequence: tgGTAAAGaaAtATTTACAg
Locus tag: Sfri_1101
Name: aceB
Funciton: Malate synthase (EC 2.3.3.9)
Locus tag: Sfri_1102
Name: aceA
Funciton: Isocitrate lyase (EC 4.1.3.1)
Sfri_1101
aceB
Malate synthase (EC 2.3.3.9)
Sfri_1102
aceA
Isocitrate lyase (EC 4.1.3.1)
Position: -156
Score: 4.5
Sequence: TCGTAAAGCAATATATACAT
Locus tag: Sfri_1935
Name: bkdA1
Funciton: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
Locus tag: Sfri_1936
Name: bkdA2
Funciton: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
Locus tag: Sfri_1937
Name: bkdB
Funciton: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
Sfri_1935
bkdA1
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
Sfri_1936
bkdA2
Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
Sfri_1937
bkdB
Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
Position: -121
Score: 4.1
Sequence: TTGTATTTATTTGTTTACGA
Locus tag: Sfri_1328
Name: phhA
Funciton: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Locus tag: Sfri_1329
Name: phhB
Funciton: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
Sfri_1328
phhA
Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Sfri_1329
phhB
Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
Position: -130
Score: 4.3
Sequence: TTGTTACGTTAACTTTCCAA
Locus tag: Sfri_2126
Name: tyrB
Funciton: Tyrosine aminotransferase (EC 2.6.1.42)
Sfri_2126
tyrB
Tyrosine aminotransferase (EC 2.6.1.42)
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