Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of TyrR in Shewanella denitrificans OS217

Properties
Regulator type: Transcription factor
TF locus tag: Sden_2593
Regulator family: TyrR
Regulation mode: activator
Biological process: Amino acid utilization
Effector: Tyrosine; Phenylalanine
Regulog: TyrR - Shewanellaceae
Statistics of regulated genes:
- Genes 38
- Operons 18
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 312 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -155
Score: 4.6
Sequence: CTGTAAACAAGACTTGCCAC
Locus tag: Sden_2593
Name: tyrR
Funciton: Transcriptional regulator of aromatic amino acid biosynthesis
Sden_2593
tyrR
Transcriptional regulator of aromatic amino acid biosynthesis
Position: -159
Score: 4.4
Sequence: GTGTAAATCTTCAGTGACAA
Locus tag: Sden_1943
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: Sden_1942
Name: ivdB
Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: Sden_1941
Name: ivdC
Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: Sden_1940
Name: ivdD
Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: Sden_1939
Name: ivdE
Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: Sden_1938
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: Sden_1937
Name: ivdG
Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
Sden_1943
ivdA
3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Sden_1942
ivdB
Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Sden_1941
ivdC
Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Sden_1940
ivdD
Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Sden_1939
ivdE
3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Sden_1938
ivdF
3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Sden_1937
ivdG
3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
Position: -117
Score: 4.2
Sequence: GTGGAAACAGAATTTAACAC
Locus tag: Sden_2244
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: Sden_2245
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: Sden_2246
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: Sden_2247
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: Sden_2248
Name: liuD
Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Locus tag: Sden_2249
Name: null
Funciton: 3-methylcrotonyl-CoA carboxylase alpha subunit
Locus tag: Sden_2250
Name: liuE
Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Locus tag: Sden_2251
Name: liuF
Funciton: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)
Locus tag: Sden_2252
Name: liuG
Funciton: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)
Sden_2244
liuR
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Sden_2245
liuA
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Sden_2246
liuB
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Sden_2247
liuC
Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Sden_2248
liuD
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Sden_2249
3-methylcrotonyl-CoA carboxylase alpha subunit
Sden_2250
liuE
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Sden_2251
liuF
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)
Sden_2252
liuG
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)
Position: -121
Score: 4.9
Sequence: TTGTAAATTTATTGTTACAC
Locus tag: Sden_1016
Name: pep1
Funciton: Alkaline serine exoprotease A precursor (EC 3.4.21.-)
Sden_1016
pep1
Alkaline serine exoprotease A precursor (EC 3.4.21.-)
Position: -229
Score: 4.1
Sequence: GAGTATCGAAAAGTTTACAC
Locus tag: Sden_0746
Name: brnQ
Funciton: Branched-chain amino acid transport system carrier protein
Sden_0746
brnQ
Branched-chain amino acid transport system carrier protein
Position: -131
Score: 4.5
Sequence: TTGGAAAGATAAGCTGACAA
Locus tag: Sden_1751
Name: aroA
Funciton: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
Sden_1751
aroA
5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
Position: -228
Score: 4.1
Sequence: ATGTAACGAATTAGTGCCAT
Position: -146
Score: 4.1
Sequence: TTGTACTGAAAAGTTTACAG
Locus tag: Sden_2592
Name: hmgC
Funciton: Fumarylacetoacetase (EC 3.7.1.2)
Locus tag: Sden_2591
Name: hmgB
Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2)
Sden_2592
hmgC
Fumarylacetoacetase (EC 3.7.1.2)
Sden_2591
hmgB
Maleylacetoacetate isomerase (EC 5.2.1.2)
Position: -122
Score: 4.3
Sequence: TCGGAAGTTAAACTTTACAT
Locus tag: Sden_3451
Name: tdo
Funciton: tryptophan 2,3-dioxygenase
Locus tag: Sden_3452
Name: kyn
Funciton: kynureninase (tryptophan degradation)
Sden_3451
tdo
tryptophan 2,3-dioxygenase
Sden_3452
kyn
kynureninase (tryptophan degradation)
Position: -269
Score: 4.5
Sequence: TTGTCAGCTTATCTTTCCAA
Locus tag: Sden_1750
Name: tyrB
Funciton: Tyrosine aminotransferase (EC 2.6.1.42)
Sden_1750
tyrB
Tyrosine aminotransferase (EC 2.6.1.42)
Position: -175
Score: 4.3
Sequence: TCGTAAATAATTAGTTCCAC
Locus tag: Sden_2931
Name: omp2
Funciton: putative TonB-dependent outer membrane receptor
Sden_2931
omp2
putative TonB-dependent outer membrane receptor
Position: -181
Score: 4.2
Sequence: TTGTATACAAAATATGACAA
Locus tag: Sden_1376
Name: ipdC
Funciton: Indole-3-pyruvate decarboxylase (EC 4.1.1.74)
Sden_1376
ipdC
Indole-3-pyruvate decarboxylase (EC 4.1.1.74)
Position: -105
Score: 4.1
Sequence: GCGTATATAAATGGTTACAT
Locus tag: Sden_1409
Name: aprE
Funciton: Alkaline serine protease
Sden_1409
aprE
Alkaline serine protease
Position: -152
Score: 4.3
Sequence: ATGTAACATAGTTTTTACAT
Locus tag: Sden_2521
Name: mdeA
Funciton: Methionine gamma-lyase (EC 4.4.1.11)
Sden_2521
mdeA
Methionine gamma-lyase (EC 4.4.1.11)
Position: -224
Score: 3.8
Sequence: TTGGTTACATAAATTGCCAG
Locus tag: Sden_1089
Name: pep3
Funciton: peptidase, M13 family
Sden_1089
pep3
peptidase, M13 family
Position: -153
Score: 4.5
Sequence: GCGTAAAGCAAATTATACAA
Locus tag: Sden_1786
Name: bkdA1
Funciton: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
Locus tag: Sden_1787
Name: bkdA2
Funciton: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
Locus tag: Sden_1788
Name: bkdB
Funciton: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
Sden_1786
bkdA1
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
Sden_1787
bkdA2
Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
Sden_1788
bkdB
Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
Position: -127
Score: 4.4
Sequence: TTGTATGCTTAAGTTTACAA
Locus tag: Sden_2595
Name: phhA
Funciton: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Locus tag: Sden_2594
Name: phhB
Funciton: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
Sden_2595
phhA
Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Sden_2594
phhB
Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
Position: -324
Score: 4
Sequence: TTGTAAGTTATTATTTACTG
Locus tag: Sden_1245
Name: aceB
Funciton: Malate synthase (EC 2.3.3.9)
Locus tag: Sden_1246
Name: aceA
Funciton: Isocitrate lyase (EC 4.1.3.1)
Sden_1245
aceB
Malate synthase (EC 2.3.3.9)
Sden_1246
aceA
Isocitrate lyase (EC 4.1.3.1)
Position: -140
Score: 4.9
Sequence: GTGGCAAGCAAAATTGCCAC
Locus tag: Sden_1823
Name: ldh
Funciton: Leucine dehydrogenase (EC 1.4.1.9)
Sden_1823
ldh
Leucine dehydrogenase (EC 1.4.1.9)
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