Regulon of TyrR in Shewanella sp MR-4
| Regulator type: | Transcription factor |
| TF locus tag: | Shewmr4_2605 |
| Regulator family: | TyrR |
| Regulation mode: | activator |
| Biological process: | Amino acid utilization |
| Effector: | Tyrosine; Phenylalanine |
| Regulog: | TyrR - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 37 |
| - Operons | 18 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - TyrR
- By TF family - TyrR
- By effector - Tyrosine
- By effector - Phenylalanine
- By pathway - Amino acid utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -179
Score: 4.5 Sequence: GTGTAAATAAAAAGTGGCAT
Locus tag: Shewmr4_0294
Name: tdo Funciton: tryptophan 2,3-dioxygenase
Locus tag: Shewmr4_0295
Name: kyn Funciton: kynureninase (tryptophan degradation) |
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tdo
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tryptophan 2,3-dioxygenase
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kyn
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kynureninase (tryptophan degradation)
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Position: -106
Score: 5.1 Sequence: GTGTAAACATAGATTTGCAC
Locus tag: Shewmr4_0794
Name: brnQ Funciton: Branched-chain amino acid transport system carrier protein |
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brnQ
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Branched-chain amino acid transport system carrier protein
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Position: -218
Score: 4 Sequence: GTGGCAATTAATTTTACCAG
Position: -152
Score: 4.6 Sequence: GTGTAAGCTAAATTTTACAG
Locus tag: Shewmr4_1936
Name: emrD Funciton: multidrug resistance protein D |
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emrD
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multidrug resistance protein D
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Position: -300
Score: 3.9 Sequence: CTGGCAAAAAAGCCTGCCAA
Position: -102
Score: 4.5 Sequence: TTGTAATCTTAACTTGACGC
Locus tag: Shewmr4_1922
Name: aroA Funciton: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) |
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aroA
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5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
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Position: -319
Score: 3.8 Sequence: ATGTAACAGTATCGTTCCAC
Position: -235
Score: 4.4 Sequence: ACGTAATGATTAGTTTACAA
Locus tag: Shewmr4_2604
Name: hmgC Funciton: Fumarylacetoacetase (EC 3.7.1.2)
Locus tag: Shewmr4_2603
Name: hmgB Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2) |
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hmgC
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Fumarylacetoacetase (EC 3.7.1.2)
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hmgB
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Maleylacetoacetate isomerase (EC 5.2.1.2)
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Position: -189
Score: 4.6 Sequence: TTGTCATTCTTTGTTTACAG
Locus tag: Shewmr4_2570
Name: aprE2 Funciton: Cold-active alkaline serine protease (EC 3.4.21.62) |
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aprE2
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Cold-active alkaline serine protease (EC 3.4.21.62)
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Position: -198
Score: 4.6 Sequence: TTGTCAATTGAGCGTTACAT
Locus tag: Shewmr4_3122
Name: putA Funciton: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) |
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putA
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Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
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Position: -105
Score: 4.6 Sequence: GTGGCAACAAGAATTGACAA
Locus tag: Shewmr4_2321
Name: liuR Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: Shewmr4_2322
Name: liuA Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: Shewmr4_2323
Name: liuB Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: Shewmr4_2324
Name: liuC Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: Shewmr4_2325
Name: liuD Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Locus tag: Shewmr4_2326
Name: liuE Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Locus tag: Shewmr4_2327
Name: liuF Funciton: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)
Locus tag: Shewmr4_2328
Name: liuG Funciton: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) |
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liuR
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Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
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liuA
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Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
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liuB
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Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
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liuC
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Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
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liuD
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Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
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liuE
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Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
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liuF
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Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)
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liuG
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Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)
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Position: -205
Score: 4.7 Sequence: CTGTAAACTAGACTTGCCAC
Locus tag: Shewmr4_2605
Name: tyrR Funciton: Transcriptional regulator of aromatic amino acid biosynthesis |
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tyrR
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Transcriptional regulator of aromatic amino acid biosynthesis
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Position: -154
Score: 5.2 Sequence: GTGGAAAGCTAGATTGCCAC
Locus tag: Shewmr4_1598
Name: ldh Funciton: Leucine dehydrogenase (EC 1.4.1.9) |
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ldh
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Leucine dehydrogenase (EC 1.4.1.9)
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Position: -208
Score: 3.9 Sequence: ATGTAACAACTTAGTTACAG
Locus tag: Shewmr4_2477
Name: mdeA Funciton: Methionine gamma-lyase (EC 4.4.1.11) |
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mdeA
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Methionine gamma-lyase (EC 4.4.1.11)
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Position: -357
Score: 3.9 Sequence: TTTGAAATTAATCATTCCAA
Locus tag: Shewmr4_1390
Name: aprE Funciton: Alkaline serine protease |
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aprE
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Alkaline serine protease
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Position: -173
Score: 4.2 Sequence: ATGGTAATTTTTAGTTACAA
Locus tag: Shewmr4_3179
Name: pep3 Funciton: peptidase, M13 family |
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pep3
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peptidase, M13 family
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Position: -122
Score: 4.4 Sequence: TTGTAATATTTACTTTACGT
Locus tag: Shewmr4_2607
Name: phhA Funciton: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Locus tag: Shewmr4_2606
Name: phhB Funciton: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
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phhA
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Phenylalanine-4-hydroxylase (EC 1.14.16.1)
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phhB
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Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
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Position: -159
Score: 4.4 Sequence: CTGTAAATCCTGACTGACAA
Locus tag: Shewmr4_2597
Name: ivdA Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: Shewmr4_2596
Name: ivdB Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: Shewmr4_2595
Name: ivdC Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: Shewmr4_2594
Name: ivdD Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: Shewmr4_2593
Name: ivdE Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: Shewmr4_2592
Name: ivdF Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: Shewmr4_2591
Name: ivdG Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
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ivdA
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3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
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ivdB
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Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
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ivdC
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Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
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ivdD
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Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
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ivdE
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3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
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ivdF
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3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
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ivdG
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3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
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Position: -372
Score: 4.3 Sequence: CTGTATAGTTAAATTTTCAA
Locus tag: Shewmr4_2767
Name: aceB Funciton: Malate synthase (EC 2.3.3.9)
Locus tag: Shewmr4_2766
Name: aceA Funciton: Isocitrate lyase (EC 4.1.3.1) |
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aceB
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Malate synthase (EC 2.3.3.9)
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aceA
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Isocitrate lyase (EC 4.1.3.1)
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Position: -160
Score: 4.8 Sequence: TTGTAAAGCATTATATACAT
Locus tag: Shewmr4_2028
Name: bkdA1 Funciton: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
Locus tag: Shewmr4_2027
Name: bkdA2 Funciton: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
Locus tag: Shewmr4_2026
Name: bkdB Funciton: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) |
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bkdA1
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Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
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bkdA2
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Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
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bkdB
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Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
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Position: -155
Score: 3.9 Sequence: TTGGCAGGCTTTTTTGCCAG
Locus tag: Shewmr4_1921
Name: tyrB Funciton: Tyrosine aminotransferase (EC 2.6.1.42) |
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tyrB
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Tyrosine aminotransferase (EC 2.6.1.42)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |