Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of TyrR in Shewanella woodyi ATCC 51908

Properties
Regulator type: Transcription factor
TF locus tag: Swoo_1717
Regulator family: TyrR
Regulation mode: activator
Biological process: Amino acid utilization
Effector: Tyrosine; Phenylalanine
Regulog: TyrR - Shewanellaceae
Statistics of regulated genes:
- Genes 34
- Operons 17
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 312 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -256
Score: 4.2
Sequence: ATGTAACAAGAGATTGCCAC
Position: -172
Score: 4.8
Sequence: CTGTAATTATTTATTTACAA
Locus tag: Swoo_1718
Name: hmgC
Funciton: Fumarylacetoacetase (EC 3.7.1.2)
Locus tag: Swoo_1719
Name: hmgB
Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2)
Swoo_1718
hmgC
Fumarylacetoacetase (EC 3.7.1.2)
Swoo_1719
hmgB
Maleylacetoacetate isomerase (EC 5.2.1.2)
Position: -160
Score: 4.1
Sequence: TCGTAAGTATAGATTTACGC
Locus tag: Swoo_2329
Name: emrD
Funciton: multidrug resistance protein D
Swoo_2329
emrD
multidrug resistance protein D
Position: -161
Score: 4.6
Sequence: CTGTAAACAAGACTTGCCAC
Locus tag: Swoo_1717
Name: tyrR
Funciton: Transcriptional regulator of aromatic amino acid biosynthesis
Swoo_1717
tyrR
Transcriptional regulator of aromatic amino acid biosynthesis
Position: -67
Score: 5.1
Sequence: GTGTAATCTAAAGTTTACAC
Locus tag: Swoo_0894
Name: brnQ
Funciton: Branched-chain amino acid transport system carrier protein
Swoo_0894
brnQ
Branched-chain amino acid transport system carrier protein
Position: -151
Score: 3.8
Sequence: CTGTCATTGAAAGTTGCCAA
Locus tag: Swoo_3602
Name: SO1117
Funciton: peptidase M17, leucyl aminopeptidase
Swoo_3602
SO1117
peptidase M17, leucyl aminopeptidase
Position: -129
Score: 4.5
Sequence: CTGGAAAACTTACTTGCCAT
Locus tag: Swoo_3222
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: Swoo_3223
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: Swoo_3224
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: Swoo_3225
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: Swoo_3226
Name: liuD
Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Locus tag: Swoo_3227
Name: liuE
Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Locus tag: Swoo_3228
Name: liuF
Funciton: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)
Locus tag: Swoo_3229
Name: liuG
Funciton: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)
Swoo_3222
liuR
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Swoo_3223
liuA
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Swoo_3224
liuB
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Swoo_3225
liuC
Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Swoo_3226
liuD
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Swoo_3227
liuE
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Swoo_3228
liuF
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)
Swoo_3229
liuG
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)
Position: -173
Score: 4.7
Sequence: CTGTAAATCTTGAGTGACAT
Locus tag: Swoo_3202
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: Swoo_3201
Name: ivdB
Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: Swoo_3200
Name: ivdC
Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: Swoo_3199
Name: ivdD
Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: Swoo_3198
Name: ivdE
Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: Swoo_3197
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: Swoo_3196
Name: ivdG
Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
Swoo_3202
ivdA
3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Swoo_3201
ivdB
Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Swoo_3200
ivdC
Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Swoo_3199
ivdD
Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Swoo_3198
ivdE
3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Swoo_3197
ivdF
3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Swoo_3196
ivdG
3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
Position: -127
Score: 5
Sequence: TTGTAAATATGATTTTACAC
Locus tag: Swoo_2373
Name: pep1
Funciton: Alkaline serine exoprotease A precursor (EC 3.4.21.-)
Swoo_2373
pep1
Alkaline serine exoprotease A precursor (EC 3.4.21.-)
Position: -323
Score: 3.8
Sequence: CTGGCATGTTTTTCTTCCAC
Position: -89
Score: 3.9
Sequence: TTGTGTATCAATATTTGCAA
Locus tag: Swoo_2309
Name: aroA
Funciton: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
Swoo_2309
aroA
5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
Position: -180
Score: 3.8
Sequence: TTGGCAACTTTCAATGACAG
Locus tag: Swoo_3603
Name: pepD
Funciton: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3)
Swoo_3603
pepD
Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3)
Position: -107
Score: 4.1
Sequence: GTGTCAGGAATGTTTTACGT
Locus tag: Swoo_3992
Name: omp2
Funciton: putative TonB-dependent outer membrane receptor
Swoo_3992
omp2
putative TonB-dependent outer membrane receptor
Position: -178
Score: 3.7
Sequence: AAGGAAACCTTTTCTTACAT
Locus tag: Swoo_0911
Name: pep3
Funciton: peptidase, M13 family
Swoo_0911
pep3
peptidase, M13 family
Position: -171
Score: 4
Sequence: ATGTAAAGCTAAACATACGG
Locus tag: Swoo_2278
Name: bkdA1
Funciton: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
Locus tag: Swoo_2279
Name: bkdA2
Funciton: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
Locus tag: Swoo_2280
Name: bkdB
Funciton: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
Swoo_2278
bkdA1
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
Swoo_2279
bkdA2
Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
Swoo_2280
bkdB
Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
Position: -186
Score: 3.8
Sequence: TTGGCAATAATTCAATACGA
Position: -121
Score: 4.6
Sequence: GTGTAACTTTTTGGTTACAA
Locus tag: Swoo_1715
Name: phhA
Funciton: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Locus tag: Swoo_1716
Name: phhB
Funciton: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
Swoo_1715
phhA
Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Swoo_1716
phhB
Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
Position: -401
Score: 3.9
Sequence: GTGTATCATTAAGTTTACTT
Position: -341
Score: 3.6
Sequence: TTGGTAAATTTGTCTGACAA
Locus tag: Swoo_1528
Name: aceB
Funciton: Malate synthase (EC 2.3.3.9)
Swoo_1528
aceB
Malate synthase (EC 2.3.3.9)
Position: -157
Score: 5.1
Sequence: GTGGAAAGCAAAATTGCCAC
Locus tag: Swoo_2710
Name: ldh
Funciton: Leucine dehydrogenase (EC 1.4.1.9)
Swoo_2710
ldh
Leucine dehydrogenase (EC 1.4.1.9)
Position: -178
Score: 3.7
Sequence: TTTAAAAGCAAACTTGCCAA
Position: -153
Score: 3.8
Sequence: GTGGAAGAAAAACATGCCAG
Locus tag: Swoo_2308
Name: tyrB
Funciton: Tyrosine aminotransferase (EC 2.6.1.42)
Swoo_2308
tyrB
Tyrosine aminotransferase (EC 2.6.1.42)
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