Regulon of TyrR in Shewanella amazonensis SB2B
| Regulator type: | Transcription factor |
| TF locus tag: | Sama_2220 |
| Regulator family: | TyrR |
| Regulation mode: | activator |
| Biological process: | Amino acid utilization |
| Effector: | Tyrosine; Phenylalanine |
| Regulog: | TyrR - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 37 |
| - Operons | 18 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - TyrR
- By TF family - TyrR
- By effector - Tyrosine
- By effector - Phenylalanine
- By pathway - Amino acid utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -51
Score: 4.3 Sequence: TTGCAAAACCTGCTTTGCAC
Locus tag: Sama_3546
Name: prlC Funciton: Oligopeptidase A (EC 3.4.24.70) |
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prlC
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Oligopeptidase A (EC 3.4.24.70)
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Position: -450
Score: 4.1 Sequence: TTGTAAATTAAATATTAAAT
Position: -364
Score: 3.7 Sequence: GTGTATTAAAAATCTTACAG
Locus tag: Sama_2381
Name: aceB Funciton: Malate synthase (EC 2.3.3.9)
Locus tag: Sama_2380
Name: aceA Funciton: Isocitrate lyase (EC 4.1.3.1) |
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aceB
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Malate synthase (EC 2.3.3.9)
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aceA
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Isocitrate lyase (EC 4.1.3.1)
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Position: -203
Score: 3.9 Sequence: ACGTAAGCCAGGCTTTCCAA
Position: -138
Score: 3.8 Sequence: GTGTCACGCCCGGATGACAG
Locus tag: Sama_1025
Name: ipdC Funciton: Indole-3-pyruvate decarboxylase (EC 4.1.1.74) |
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ipdC
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Indole-3-pyruvate decarboxylase (EC 4.1.1.74)
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Position: -266
Score: 3.8 Sequence: ATGGCAACAAATCTTGCAAT
Locus tag: Sama_1734
Name: aroA Funciton: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) |
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aroA
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5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
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Position: -219
Score: 4 Sequence: TTGTCAAGTGGGCGTTACGC
Locus tag: Sama_2676
Name: putA Funciton: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) |
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putA
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Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
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Position: -234
Score: 4.3 Sequence: GTGTAAAAAGAATTTGCCAG
Position: -150
Score: 4.4 Sequence: CTGTATTTAAAAGTTTACAA
Locus tag: Sama_2219
Name: hmgC Funciton: Fumarylacetoacetase (EC 3.7.1.2)
Locus tag: Sama_2218
Name: hmgB Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2) |
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hmgC
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Fumarylacetoacetase (EC 3.7.1.2)
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hmgB
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Maleylacetoacetate isomerase (EC 5.2.1.2)
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Position: -123
Score: 4.4 Sequence: CTGGAAACTTTGGCTTCCAC
Locus tag: Sama_2519
Name: pepD Funciton: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) |
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pepD
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Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3)
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Position: -109
Score: 4.5 Sequence: CTGTAATTCTGGCGTTACAC
Locus tag: Sama_2740
Name: brnQ Funciton: Branched-chain amino acid transport system carrier protein |
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brnQ
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Branched-chain amino acid transport system carrier protein
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Position: -134
Score: 4.6 Sequence: CTGTAAACAAGACTTGCCAC
Locus tag: Sama_2220
Name: tyrR Funciton: Transcriptional regulator of aromatic amino acid biosynthesis |
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tyrR
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Transcriptional regulator of aromatic amino acid biosynthesis
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Position: -123
Score: 4.2 Sequence: CTGTAAGCTAAGCCTGACAC
Locus tag: Sama_1363
Name: liuR Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: Sama_1362
Name: liuA Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: Sama_1361
Name: liuB Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: Sama_1360
Name: liuC Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: Sama_1359
Name: liuD Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Locus tag: Sama_1358
Name: liuE Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Locus tag: Sama_1357
Name: liuF Funciton: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)
Locus tag: Sama_1356
Name: liuG Funciton: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) |
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liuR
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Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
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liuA
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Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
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liuB
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Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
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liuC
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Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
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liuD
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Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
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liuE
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Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
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liuF
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Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)
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liuG
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Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)
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Position: -326
Score: 4.8 Sequence: GTGTAACTACATATTTACAA
Locus tag: Sama_2026
Name: omp1 Funciton: TonB-dependent receptor
Locus tag: Sama_2025
Name: pep4 Funciton: prolyl oligopeptidase family protein |
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omp1
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TonB-dependent receptor
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pep4
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prolyl oligopeptidase family protein
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Position: -140
Score: 4.6 Sequence: GTGTAACTCATATGTTACAC
Locus tag: Sama_1201
Name: pep2 Funciton: peptidase M4 thermolysin |
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pep2
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peptidase M4 thermolysin
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Position: -45
Score: 4.4 Sequence: GTGGAAGCCAAAGTTTCCAG
Locus tag: Sama_2518
Name: SO1117 Funciton: peptidase M17, leucyl aminopeptidase |
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SO1117
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peptidase M17, leucyl aminopeptidase
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Position: -123
Score: 4.3 Sequence: TTGTAATAAAAGCTTTACGA
Locus tag: Sama_2222
Name: phhA Funciton: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Locus tag: Sama_2221
Name: phhB Funciton: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
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phhA
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Phenylalanine-4-hydroxylase (EC 1.14.16.1)
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phhB
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Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
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Position: -150
Score: 4.3 Sequence: CTGTAAAGCAATTAATACAT
Locus tag: Sama_1709
Name: bkdA1 Funciton: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
Locus tag: Sama_1710
Name: bkdA2 Funciton: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
Locus tag: Sama_1711
Name: bkdB Funciton: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) |
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bkdA1
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Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
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bkdA2
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Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
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bkdB
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Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
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Position: -195
Score: 3.8 Sequence: GTGTCAATCTCAGTTCCCGC
Position: -173
Score: 4.6 Sequence: CTGTAAATCCAGAGTGACAA
Locus tag: Sama_1375
Name: ivdA Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: Sama_1376
Name: ivdB Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: Sama_1377
Name: ivdC Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: Sama_1378
Name: ivdD Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: Sama_1379
Name: ivdE Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: Sama_1380
Name: ivdF Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: Sama_1381
Name: ivdG Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
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ivdA
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3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
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ivdB
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Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
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ivdC
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Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
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ivdD
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Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
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ivdE
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3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
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ivdF
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3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
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ivdG
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3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
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Position: -147
Score: 5.1 Sequence: GTGGAAAGCAAAATTGCCAC
Locus tag: Sama_2067
Name: ldh Funciton: Leucine dehydrogenase (EC 1.4.1.9) |
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ldh
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Leucine dehydrogenase (EC 1.4.1.9)
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Position: -224
Score: 3.8 Sequence: ATTGCAAGATTTGTTGCCAT
Locus tag: Sama_1733
Name: tyrB Funciton: Tyrosine aminotransferase (EC 2.6.1.42) |
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tyrB
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Tyrosine aminotransferase (EC 2.6.1.42)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |