Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of TyrR in Shewanella amazonensis SB2B

Properties
Regulator type: Transcription factor
TF locus tag: Sama_2220
Regulator family: TyrR
Regulation mode: activator
Biological process: Amino acid utilization
Effector: Tyrosine; Phenylalanine
Regulog: TyrR - Shewanellaceae
Statistics of regulated genes:
- Genes 37
- Operons 18
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 312 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -51
Score: 4.3
Sequence: TTGCAAAACCTGCTTTGCAC
Locus tag: Sama_3546
Name: prlC
Funciton: Oligopeptidase A (EC 3.4.24.70)
Sama_3546
prlC
Oligopeptidase A (EC 3.4.24.70)
Position: -450
Score: 4.1
Sequence: TTGTAAATTAAATATTAAAT
Position: -364
Score: 3.7
Sequence: GTGTATTAAAAATCTTACAG
Locus tag: Sama_2381
Name: aceB
Funciton: Malate synthase (EC 2.3.3.9)
Locus tag: Sama_2380
Name: aceA
Funciton: Isocitrate lyase (EC 4.1.3.1)
Sama_2381
aceB
Malate synthase (EC 2.3.3.9)
Sama_2380
aceA
Isocitrate lyase (EC 4.1.3.1)
Position: -203
Score: 3.9
Sequence: ACGTAAGCCAGGCTTTCCAA
Position: -138
Score: 3.8
Sequence: GTGTCACGCCCGGATGACAG
Locus tag: Sama_1025
Name: ipdC
Funciton: Indole-3-pyruvate decarboxylase (EC 4.1.1.74)
Sama_1025
ipdC
Indole-3-pyruvate decarboxylase (EC 4.1.1.74)
Position: -266
Score: 3.8
Sequence: ATGGCAACAAATCTTGCAAT
Locus tag: Sama_1734
Name: aroA
Funciton: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
Sama_1734
aroA
5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
Position: -219
Score: 4
Sequence: TTGTCAAGTGGGCGTTACGC
Locus tag: Sama_2676
Name: putA
Funciton: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
Sama_2676
putA
Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
Position: -234
Score: 4.3
Sequence: GTGTAAAAAGAATTTGCCAG
Position: -150
Score: 4.4
Sequence: CTGTATTTAAAAGTTTACAA
Locus tag: Sama_2219
Name: hmgC
Funciton: Fumarylacetoacetase (EC 3.7.1.2)
Locus tag: Sama_2218
Name: hmgB
Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2)
Sama_2219
hmgC
Fumarylacetoacetase (EC 3.7.1.2)
Sama_2218
hmgB
Maleylacetoacetate isomerase (EC 5.2.1.2)
Position: -123
Score: 4.4
Sequence: CTGGAAACTTTGGCTTCCAC
Locus tag: Sama_2519
Name: pepD
Funciton: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3)
Sama_2519
pepD
Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3)
Position: -109
Score: 4.5
Sequence: CTGTAATTCTGGCGTTACAC
Locus tag: Sama_2740
Name: brnQ
Funciton: Branched-chain amino acid transport system carrier protein
Sama_2740
brnQ
Branched-chain amino acid transport system carrier protein
Position: -134
Score: 4.6
Sequence: CTGTAAACAAGACTTGCCAC
Locus tag: Sama_2220
Name: tyrR
Funciton: Transcriptional regulator of aromatic amino acid biosynthesis
Sama_2220
tyrR
Transcriptional regulator of aromatic amino acid biosynthesis
Position: -123
Score: 4.2
Sequence: CTGTAAGCTAAGCCTGACAC
Locus tag: Sama_1363
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: Sama_1362
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: Sama_1361
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: Sama_1360
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: Sama_1359
Name: liuD
Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Locus tag: Sama_1358
Name: liuE
Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Locus tag: Sama_1357
Name: liuF
Funciton: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)
Locus tag: Sama_1356
Name: liuG
Funciton: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)
Sama_1363
liuR
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Sama_1362
liuA
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Sama_1361
liuB
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Sama_1360
liuC
Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Sama_1359
liuD
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Sama_1358
liuE
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Sama_1357
liuF
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)
Sama_1356
liuG
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)
Position: -326
Score: 4.8
Sequence: GTGTAACTACATATTTACAA
Locus tag: Sama_2026
Name: omp1
Funciton: TonB-dependent receptor
Locus tag: Sama_2025
Name: pep4
Funciton: prolyl oligopeptidase family protein
Sama_2026
omp1
TonB-dependent receptor
Sama_2025
pep4
prolyl oligopeptidase family protein
Position: -140
Score: 4.6
Sequence: GTGTAACTCATATGTTACAC
Locus tag: Sama_1201
Name: pep2
Funciton: peptidase M4 thermolysin
Sama_1201
pep2
peptidase M4 thermolysin
Position: -45
Score: 4.4
Sequence: GTGGAAGCCAAAGTTTCCAG
Locus tag: Sama_2518
Name: SO1117
Funciton: peptidase M17, leucyl aminopeptidase
Sama_2518
SO1117
peptidase M17, leucyl aminopeptidase
Position: -123
Score: 4.3
Sequence: TTGTAATAAAAGCTTTACGA
Locus tag: Sama_2222
Name: phhA
Funciton: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Locus tag: Sama_2221
Name: phhB
Funciton: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
Sama_2222
phhA
Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Sama_2221
phhB
Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
Position: -150
Score: 4.3
Sequence: CTGTAAAGCAATTAATACAT
Locus tag: Sama_1709
Name: bkdA1
Funciton: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
Locus tag: Sama_1710
Name: bkdA2
Funciton: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
Locus tag: Sama_1711
Name: bkdB
Funciton: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
Sama_1709
bkdA1
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
Sama_1710
bkdA2
Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
Sama_1711
bkdB
Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
Position: -195
Score: 3.8
Sequence: GTGTCAATCTCAGTTCCCGC
Position: -173
Score: 4.6
Sequence: CTGTAAATCCAGAGTGACAA
Locus tag: Sama_1375
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: Sama_1376
Name: ivdB
Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: Sama_1377
Name: ivdC
Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: Sama_1378
Name: ivdD
Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: Sama_1379
Name: ivdE
Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: Sama_1380
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: Sama_1381
Name: ivdG
Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
Sama_1375
ivdA
3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Sama_1376
ivdB
Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Sama_1377
ivdC
Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Sama_1378
ivdD
Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Sama_1379
ivdE
3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Sama_1380
ivdF
3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Sama_1381
ivdG
3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
Position: -147
Score: 5.1
Sequence: GTGGAAAGCAAAATTGCCAC
Locus tag: Sama_2067
Name: ldh
Funciton: Leucine dehydrogenase (EC 1.4.1.9)
Sama_2067
ldh
Leucine dehydrogenase (EC 1.4.1.9)
Position: -224
Score: 3.8
Sequence: ATTGCAAGATTTGTTGCCAT
Locus tag: Sama_1733
Name: tyrB
Funciton: Tyrosine aminotransferase (EC 2.6.1.42)
Sama_1733
tyrB
Tyrosine aminotransferase (EC 2.6.1.42)
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