Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of HypR in Shewanella sediminis HAW-EB3

Properties
Regulator type: Transcription factor
TF locus tag: Ssed_1759
Regulator family: GntR/Others
Regulation mode: activator (repressor)
Biological process: Proline and 4-hydrohyproline utilization
Effector: Proline; 4-hydroxyproline
Regulog: HypR - Shewanellaceae
Statistics of regulated genes:
- Genes 12
- Operons 8
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 96 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -31
Score: 4.3
Sequence: ACTGTATCCAAA
Locus tag: Ssed_3503
Name: COG2423
Funciton: Predicted ornithine cyclodeaminase, mu-crystallin homolog
Ssed_3503
COG2423
Predicted ornithine cyclodeaminase, mu-crystallin homolog
Position: -35
Score: 5.4
Sequence: ATTGTATACAAA
Locus tag: Ssed_3300
Name: colA1
Funciton: Microbial collagenase, secreted (EC 3.4.24.3)
Ssed_3300
colA1
Microbial collagenase, secreted (EC 3.4.24.3)
Position: -28
Score: 4.9
Sequence: ATTGTATGCAAA
Locus tag: Ssed_0039
Name: colA2
Funciton: Microbial collagenase, secreted (EC 3.4.24.3)
Ssed_0039
colA2
Microbial collagenase, secreted (EC 3.4.24.3)
Position: -25
Score: 4.7
Sequence: AGTGTATACAAT
Locus tag: Ssed_2005
Name: pdtP
Funciton: Predicted proline dipeptide/tripeptide permease, MFS family
Ssed_2005
pdtP
Predicted proline dipeptide/tripeptide permease, MFS family
Position: -247
Score: 4.1
Sequence: TGAGTATACAAT
Position: -110
Score: 5.4
Sequence: ATTGTATACAAA
Locus tag: Ssed_3846
Name: putA
Funciton: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
Ssed_3846
putA
Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
Position: -126
Score: 4.2
Sequence: AAAGTATACAAA
Locus tag: Ssed_1782
Name: ampP
Funciton: Xaa-Pro aminopeptidase (EC 3.4.11.9)
Ssed_1782
ampP
Xaa-Pro aminopeptidase (EC 3.4.11.9)
Position: -105
Score: 5.3
Sequence: ATTGTATACAAT
Position: -32
Score: 4.9
Sequence: ATTGCATACAAA
Locus tag: Ssed_1763
Name: hypE2
Funciton: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
Locus tag: Ssed_1764
Name: hypO
Funciton: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
Ssed_1763
hypE2
Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
Ssed_1764
hypO
D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
Position: -171
Score: 4.9
Sequence: TTTGTATGCAAT
Position: -98
Score: 5.3
Sequence: ATTGTATACAAT
Locus tag: Ssed_1762
Name: hypD
Funciton: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)
Locus tag: Ssed_1761
Name: hypE
Funciton: Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)
Locus tag: Ssed_1760
Name: hypH
Funciton: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
Locus tag: Ssed_1759
Name: hypR
Funciton: Predicted regulator for proline and hydroxyproline utilization, GntR family
Ssed_1762
hypD
1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)
Ssed_1761
hypE
Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)
Ssed_1760
hypH
Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
Ssed_1759
hypR
Predicted regulator for proline and hydroxyproline utilization, GntR family
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