Regulog HypR - Shewanellaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:	activator (repressor)
Biological process:	Proline and 4-hydrohyproline utilization
Effector:	Proline; 4-hydroxyproline
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 96 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - HypR
By TF family - GntR/Others
By effector - Proline
By effector - 4-hydroxyproline
By pathway - Proline and 4-hydrohyproline utilization

Statistics of regulated genes
Genome	Genes	Operons
Shewanella oneidensis MR-1	1	1
Shewanella putrefaciens CN-32	1	1
Shewanella sp W3-18-1	1	1
Shewanella sp ANA-3	1	1
Shewanella sp MR-4	1	1
Shewanella sp MR-7	1	1
Shewanella baltica OS155	1	1
Shewanella denitrificans OS217	2	2
Shewanella frigidimarina NCIMB 400	3	3
Shewanella amazonensis SB2B	11	7
Shewanella loihica PV-4	14	10
Shewanella pealeana ATCC 700345	14	11
Shewanella halifaxensis HAW-EB4	14	11
Shewanella piezotolerans WP3	14	11
Shewanella sediminis HAW-EB3	12	8
Shewanella woodyi ATCC 51908	13	9

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																	Function

CRON 1.
colA2	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	* Shewanella amazonensis SB2B Site: position = -48 score = 3.71162 sequence = AAAATATACAAT Gene: Sama_1517: Microbial collagenase, secreted (EC 3.4.24.3)	* Shewanella loihica PV-4 Site: position = -28 score = 4.87792 sequence = ATTGTATGCAAA Gene: Shew_3732: Microbial collagenase, secreted (EC 3.4.24.3)	* Shewanella pealeana ATCC 700345 Site: position = -107 score = 4.7107 sequence = ATTGTATTCAAT Gene: Spea_0035: Microbial collagenase, secreted (EC 3.4.24.3)	* Shewanella halifaxensis HAW-EB4 Site: position = -43 score = 4.7107 sequence = ATTGTATTCAAT Gene: Shal_0031: Microbial collagenase, secreted (EC 3.4.24.3)	* Shewanella piezotolerans WP3 Site: position = -71 score = 3.43173 sequence = GTTGTATACATC Site: position = -30 score = 4.65457 sequence = ATTGTATCCAAA Gene: swp_0061: Microbial collagenase, secreted (EC 3.4.24.3)	* Shewanella sediminis HAW-EB3 Site: position = -28 score = 4.87792 sequence = ATTGTATGCAAA Gene: Ssed_0039: Microbial collagenase, secreted (EC 3.4.24.3)	* Shewanella woodyi ATCC 51908 Site: position = -28 score = 4.65457 sequence = ATTGTATCCAAA Gene: Swoo_0042: Microbial collagenase, secreted (EC 3.4.24.3)	Microbial collagenase, secreted (EC 3.4.24.3)

CRON 2.
hypD2	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	* Shewanella pealeana ATCC 700345 Site: position = -52 score = 5.09423 sequence = ATTTTATACAAT Gene: Spea_1655: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted	Shewanella halifaxensis HAW-EB4	* Shewanella piezotolerans WP3 Site: position = -36 score = 4.50324 sequence = AATGTATGCAAA Gene: swp_1907: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted

CRON 3.
prdP	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	* Shewanella denitrificans OS217 Site: position = -50 score = 5.32149 sequence = ATTGTATACAAT Gene: Sden_0888: Proline dipeptidase	* Shewanella frigidimarina NCIMB 400 Site: position = -138 score = 5.32149 sequence = ATTGTATACAAT Gene: Sfri_3046: Proline dipeptidase	Shewanella amazonensis SB2B Gene: Sama_0688: Proline dipeptidase	* Shewanella loihica PV-4 Site: position = -93 score = 4.73299 sequence = TTTGTATACATT Gene: Shew_0955: Proline dipeptidase	Shewanella pealeana ATCC 700345 Gene: Spea_0922: Proline dipeptidase	* Shewanella halifaxensis HAW-EB4 Site: position = -125 score = 3.57787 sequence = TTTGTATATTTT Gene: Shal_0974: Proline dipeptidase	Shewanella piezotolerans WP3 Gene: swp_4195: Proline dipeptidase	Shewanella sediminis HAW-EB3 Gene: Ssed_1028: Proline dipeptidase	* Shewanella woodyi ATCC 51908 Site: position = -126 score = 3.57787 sequence = TTTGTATATTTT Gene: Swoo_1099: Proline dipeptidase	Proline dipeptidase

CRON 4.
omp2 (COG1629)	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	* Shewanella piezotolerans WP3 Site: position = -149 score = 4.56517 sequence = ACTGTATAAAAT Gene: swp_3286: TonB-dependent receptor	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	TonB-dependent receptor

CRON 5.
colA1	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	* Shewanella amazonensis SB2B Site: position = -38 score = 4.96115 sequence = ATTGCATACAAT Gene: Sama_1077: Microbial collagenase, secreted (EC 3.4.24.3)	* Shewanella loihica PV-4 Site: position = -51 score = 5.018 sequence = ATTTTATACAAA Gene: Shew_2743: Microbial collagenase, secreted (EC 3.4.24.3)	* Shewanella pealeana ATCC 700345 Site: position = -5 score = 5.06772 sequence = ATTGTATGCAAA Gene: Spea_2966: Microbial collagenase, secreted (EC 3.4.24.3)	* Shewanella halifaxensis HAW-EB4 Site: position = -5 score = 5.06772 sequence = ATTGTATGCAAA Gene: Shal_3056: Microbial collagenase, secreted (EC 3.4.24.3)	* Shewanella piezotolerans WP3 Site: position = -35 score = 5.06772 sequence = ATTGTATGCAAA Gene: swp_1269: Microbial collagenase, secreted (EC 3.4.24.3)	* Shewanella sediminis HAW-EB3 Site: position = -35 score = 5.36724 sequence = ATTGTATACAAA Gene: Ssed_3300: Microbial collagenase, secreted (EC 3.4.24.3)	* Shewanella woodyi ATCC 51908 Site: position = -35 score = 4.57853 sequence = ACTTTATACAAT Gene: Swoo_3449: Microbial collagenase, secreted (EC 3.4.24.3)	Microbial collagenase, secreted (EC 3.4.24.3)

CRON 6.
hypE2	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	* Shewanella amazonensis SB2B Site: position = -33 score = 4.55693 sequence = ATTGCATACATT Site: position = -106 score = 5.32149 sequence = ATTGTATACAAT Gene: Sama_1532: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)	* Shewanella loihica PV-4 Site: position = -32 score = 4.87792 sequence = ATTGCATACAAA Site: position = -118 score = 5.32149 sequence = ATTGTATACAAT Gene: Shew_2361: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)	* Shewanella pealeana ATCC 700345 Site: position = -43 score = 5.32149 sequence = ATTGTATACAAT Site: position = -124 score = 3.86645 sequence = ATTGTATACGCA Gene: Spea_1705: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)	* Shewanella halifaxensis HAW-EB4 Site: position = 95 score = 5.32149 sequence = ATTGTATACAAT Site: position = 14 score = 3.86645 sequence = ATTGTATACGCA Gene: Shal_2554: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)	* Shewanella piezotolerans WP3 Site: position = -41 score = 5.32149 sequence = ATTGTATACAAT Site: position = -112 score = 3.2827 sequence = ATTGTATACGCG Gene: swp_1985: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)	* Shewanella sediminis HAW-EB3 Site: position = -32 score = 4.87792 sequence = ATTGCATACAAA Site: position = -105 score = 5.32149 sequence = ATTGTATACAAT Gene: Ssed_1763: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)	* Shewanella woodyi ATCC 51908 Site: position = -106 score = 5.32149 sequence = ATTGTATACAAT Site: position = -32 score = 4.87792 sequence = ATTGCATACAAA Gene: Swoo_2821: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)	Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
hypO	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B Gene: Sama_1533: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster	Shewanella loihica PV-4 Gene: Shew_2360: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster	Shewanella pealeana ATCC 700345 Gene: Spea_1706: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster	Shewanella halifaxensis HAW-EB4 Gene: Shal_2553: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster	Shewanella piezotolerans WP3 Gene: swp_1986: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster	Shewanella sediminis HAW-EB3 Gene: Ssed_1764: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster	Shewanella woodyi ATCC 51908 Gene: Swoo_2820: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster	D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster

CRON 7.
colA3	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	* Shewanella loihica PV-4 Site: position = -159 score = 4.94466 sequence = ATTGTATAAAAT Gene: Shew_1685: Microbial collagenase, secreted (EC 3.4.24.3)	* Shewanella pealeana ATCC 700345 Site: position = -160 score = 4.48992 sequence = ATTGTATAAATT Gene: Spea_2754: Microbial collagenase, secreted (EC 3.4.24.3)	* Shewanella halifaxensis HAW-EB4 Site: position = -170 score = 4.48992 sequence = ATTGTATAAATT Gene: Shal_2840: Microbial collagenase, secreted (EC 3.4.24.3)	* Shewanella piezotolerans WP3 Site: position = -216 score = 3.39332 sequence = ATTGGAGTCAAT Site: position = -359 score = 4.1801 sequence = ATTGCATAAATT Gene: swp_3353: Microbial collagenase, secreted (EC 3.4.24.3)	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	Microbial collagenase, secreted (EC 3.4.24.3)

CRON 8.
hypD	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	* Shewanella amazonensis SB2B Site: position = -110 score = 5.32149 sequence = ATTGTATACAAT Site: position = -183 score = 4.55693 sequence = AATGTATGCAAT Gene: Sama_1531: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)	* Shewanella loihica PV-4 Site: position = -97 score = 5.32149 sequence = ATTGTATACAAT Site: position = -183 score = 4.87792 sequence = TTTGTATGCAAT Gene: Shew_2362: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)	* Shewanella pealeana ATCC 700345 Site: position = -76 score = 3.86645 sequence = TGCGTATACAAT Site: position = -157 score = 5.32149 sequence = ATTGTATACAAT Gene: Spea_1704: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)	* Shewanella halifaxensis HAW-EB4 Site: position = -65 score = 3.86645 sequence = TGCGTATACAAT Site: position = -146 score = 5.32149 sequence = ATTGTATACAAT Gene: Shal_2555: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)	* Shewanella piezotolerans WP3 Site: position = -138 score = 5.32149 sequence = ATTGTATACAAT Gene: swp_1984: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)	* Shewanella sediminis HAW-EB3 Site: position = -171 score = 4.87792 sequence = TTTGTATGCAAT Site: position = -98 score = 5.32149 sequence = ATTGTATACAAT Gene: Ssed_1762: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)	* Shewanella woodyi ATCC 51908 Site: position = -95 score = 5.32149 sequence = ATTGTATACAAT Site: position = -169 score = 4.87792 sequence = TTTGTATGCAAT Gene: Swoo_2822: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)	1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)
hypE	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B Gene: Sama_1530: Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)	Shewanella loihica PV-4 Gene: Shew_2363: Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)	Shewanella pealeana ATCC 700345 Gene: Spea_1703: Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)	Shewanella halifaxensis HAW-EB4 Gene: Shal_2556: Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)	Shewanella piezotolerans WP3 Gene: swp_1983: Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)	Shewanella sediminis HAW-EB3 Gene: Ssed_1761: Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)	Shewanella woodyi ATCC 51908 Gene: Swoo_2823: Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)	Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)
hypH	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B Gene: Sama_1529: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible	Shewanella loihica PV-4 Gene: Shew_2364: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible	Shewanella pealeana ATCC 700345 Gene: Spea_1702: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible	Shewanella halifaxensis HAW-EB4 Gene: Shal_2557: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible	Shewanella piezotolerans WP3 Gene: swp_1982: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible	Shewanella sediminis HAW-EB3 Gene: Ssed_1760: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible	Shewanella woodyi ATCC 51908 Gene: Swoo_2824: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible	Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
hypR	Shewanella oneidensis MR-1 Gene: SO2852: Predicted regulator for proline and hydroxyproline utilization, GntR family	Shewanella putrefaciens CN-32 Gene: Sputcn32_2354: Predicted regulator for proline and hydroxyproline utilization, GntR family	Shewanella sp W3-18-1 Gene: Sputw3181_1655: Predicted regulator for proline and hydroxyproline utilization, GntR family	Shewanella sp ANA-3 Gene: Shewana3_1582: Predicted regulator for proline and hydroxyproline utilization, GntR family	Shewanella sp MR-4 Gene: Shewmr4_1521: Predicted regulator for proline and hydroxyproline utilization, GntR family	Shewanella sp MR-7 Gene: Shewmr7_1588: Predicted regulator for proline and hydroxyproline utilization, GntR family	Shewanella baltica OS155 Gene: Sbal_2633: Predicted regulator for proline and hydroxyproline utilization, GntR family	Shewanella denitrificans OS217 Gene: Sden_1382: Predicted regulator for proline and hydroxyproline utilization, GntR family	Shewanella frigidimarina NCIMB 400 Gene: Sfri_1551: Predicted regulator for proline and hydroxyproline utilization, GntR family	* Shewanella amazonensis SB2B Site: position = -19 score = 3.39882 sequence = TTGGTATAAAGA Gene: Sama_1528: Predicted regulator for proline and hydroxyproline utilization, GntR family	Shewanella loihica PV-4 Gene: Shew_2365: Predicted regulator for proline and hydroxyproline utilization, GntR family	* Shewanella pealeana ATCC 700345 Site: position = -30 score = 3.63866 sequence = CTTGTATAAATA Gene: Spea_1701: Predicted regulator for proline and hydroxyproline utilization, GntR family	* Shewanella halifaxensis HAW-EB4 Site: position = -29 score = 3.63866 sequence = CTTGTATAAATA Gene: Shal_2558: Predicted regulator for proline and hydroxyproline utilization, GntR family	Shewanella piezotolerans WP3 Gene: swp_1981: Predicted regulator for proline and hydroxyproline utilization, GntR family	Shewanella sediminis HAW-EB3 Gene: Ssed_1759: Predicted regulator for proline and hydroxyproline utilization, GntR family	Shewanella woodyi ATCC 51908 Gene: Swoo_2825: Predicted regulator for proline and hydroxyproline utilization, GntR family	Predicted regulator for proline and hydroxyproline utilization, GntR family

CRON 9.
COG2423	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	* Shewanella amazonensis SB2B Site: position = -42 score = 3.75862 sequence = AGTACATACAAT Gene: Sama_2610: Predicted ornithine cyclodeaminase, mu-crystallin homolog	* Shewanella loihica PV-4 Site: position = -36 score = 4.65294 sequence = TTTGCATACAAT Gene: Shew_2955: Predicted ornithine cyclodeaminase, mu-crystallin homolog	* Shewanella pealeana ATCC 700345 Site: position = -32 score = 4.59854 sequence = ATAGTATAAAAT Gene: Spea_3170: Predicted ornithine cyclodeaminase, mu-crystallin homolog	* Shewanella halifaxensis HAW-EB4 Site: position = -32 score = 4.59854 sequence = ATAGTATAAAAT Gene: Shal_3252: Predicted ornithine cyclodeaminase, mu-crystallin homolog	Shewanella piezotolerans WP3 Gene: swp_3859: Predicted ornithine cyclodeaminase, mu-crystallin homolog	* Shewanella sediminis HAW-EB3 Site: position = -31 score = 4.30936 sequence = ACTGTATCCAAA Gene: Ssed_3503: Predicted ornithine cyclodeaminase, mu-crystallin homolog	* Shewanella woodyi ATCC 51908 Site: position = -33 score = 4.49913 sequence = TTGGTATACAAT Gene: Swoo_3726: Predicted ornithine cyclodeaminase, mu-crystallin homolog	Predicted ornithine cyclodeaminase, mu-crystallin homolog

CRON 10.
omp (COG1629)	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	* Shewanella frigidimarina NCIMB 400 Site: position = -244 score = 3.99487 sequence = ATTGTTTATAAT Gene: Sfri_2628: TonB-dependent receptor	Shewanella amazonensis SB2B	Shewanella loihica PV-4 Gene: Shew_2480: TonB-dependent receptor	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	* Shewanella piezotolerans WP3 Site: position = -85 score = 5.01168 sequence = ATTGCATACAAT Gene: swp_3281: TonB-dependent receptor	Shewanella sediminis HAW-EB3 Gene: Ssed_1569: TonB-dependent receptor	Shewanella woodyi ATCC 51908	TonB-dependent receptor

CRON 11.
pdtP	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	* Shewanella loihica PV-4 Site: position = -26 score = 4.55693 sequence = AATGCATACAAT Gene: Shew_2104: Predicted proline dipeptide/tripeptide permease, MFS family	* Shewanella pealeana ATCC 700345 Site: position = -26 score = 4.48992 sequence = AATGTATAAAAT Gene: Spea_2388: Predicted proline dipeptide/tripeptide permease, MFS family	* Shewanella halifaxensis HAW-EB4 Site: position = -26 score = 4.48992 sequence = AATGTATAAAAT Gene: Shal_1895: Predicted proline dipeptide/tripeptide permease, MFS family	* Shewanella piezotolerans WP3 Site: position = 16 score = 4.48992 sequence = AATGTATAAAAT Gene: swp_2320: Predicted proline dipeptide/tripeptide permease, MFS family	* Shewanella sediminis HAW-EB3 Site: position = -25 score = 4.69346 sequence = AGTGTATACAAT Gene: Ssed_2005: Predicted proline dipeptide/tripeptide permease, MFS family	* Shewanella woodyi ATCC 51908 Site: position = -29 score = 4.48992 sequence = AATGTATAAAAT Gene: Swoo_2598: Predicted proline dipeptide/tripeptide permease, MFS family	Predicted proline dipeptide/tripeptide permease, MFS family

CRON 12.
putA	* Shewanella oneidensis MR-1 Site: position = -92 score = 5.36724 sequence = ATTGTATACAAA Gene: SO3774: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)	* Shewanella putrefaciens CN-32 Site: position = -74 score = 5.36724 sequence = ATTGTATACAAA Gene: Sputcn32_3099: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)	* Shewanella sp W3-18-1 Site: position = -74 score = 5.36724 sequence = ATTGTATACAAA Gene: Sputw3181_0845: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)	* Shewanella sp ANA-3 Site: position = -77 score = 5.36724 sequence = ATTGTATACAAA Gene: Shewana3_0819: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)	* Shewanella sp MR-4 Site: position = -78 score = 5.36724 sequence = ATTGTATACAAA Gene: Shewmr4_3122: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)	* Shewanella sp MR-7 Site: position = -77 score = 5.36724 sequence = ATTGTATACAAA Gene: Shewmr7_0850: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)	* Shewanella baltica OS155 Site: position = -74 score = 5.36724 sequence = ATTGTATACAAA Gene: Sbal_3458: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)	* Shewanella denitrificans OS217 Site: position = -119 score = 5.36724 sequence = ATTGTATACAAA Gene: Sden_0689: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)	* Shewanella frigidimarina NCIMB 400 Site: position = -76 score = 5.36724 sequence = ATTGTATACAAA Gene: Sfri_0568: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)	* Shewanella amazonensis SB2B Site: position = -99 score = 5.36724 sequence = ATTGTATACAAA Gene: Sama_2676: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)	* Shewanella loihica PV-4 Site: position = -92 score = 5.36724 sequence = ATTGTATACAAA Gene: Shew_0615: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)	* Shewanella pealeana ATCC 700345 Site: position = -73 score = 5.36724 sequence = ATTGTATACAAA Gene: Spea_3490: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)	* Shewanella halifaxensis HAW-EB4 Site: position = -68 score = 5.36724 sequence = ATTGTATACAAA Gene: Shal_3585: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)	* Shewanella piezotolerans WP3 Site: position = -83 score = 5.36724 sequence = ATTGTATACAAA Gene: swp_0809: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)	* Shewanella sediminis HAW-EB3 Site: position = -110 score = 5.36724 sequence = ATTGTATACAAA Site: position = -247 score = 4.08846 sequence = TGAGTATACAAT Gene: Ssed_3846: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)	* Shewanella woodyi ATCC 51908 Site: position = -124 score = 5.36724 sequence = ATTGTATACAAA Gene: Swoo_0714: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)	Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)

CRON 13.
ampP	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	* Shewanella amazonensis SB2B Site: position = -61 score = 4.56811 sequence = ATTGCATGCAAA Gene: Sama_1534: Xaa-Pro aminopeptidase (EC 3.4.11.9)	* Shewanella loihica PV-4 Site: position = -65 score = 3.87913 sequence = AATGAATAAAAT Gene: Shew_2358: Xaa-Pro aminopeptidase (EC 3.4.11.9)	* Shewanella pealeana ATCC 700345 Site: position = -71 score = 3.87913 sequence = AATGAATAAAAT Gene: Spea_1711: Xaa-Pro aminopeptidase (EC 3.4.11.9)	* Shewanella halifaxensis HAW-EB4 Site: position = -77 score = 3.70861 sequence = AAAGTATACACT Gene: Shal_2548: Xaa-Pro aminopeptidase (EC 3.4.11.9)	* Shewanella piezotolerans WP3 Site: position = -28 score = 4.24173 sequence = AATATATACAAT Gene: swp_1988: Xaa-Pro aminopeptidase (EC 3.4.11.9)	* Shewanella sediminis HAW-EB3 Site: position = -126 score = 4.20289 sequence = AAAGTATACAAA Gene: Ssed_1782: Xaa-Pro aminopeptidase (EC 3.4.11.9)	* Shewanella woodyi ATCC 51908 Site: position = -94 score = 3.57787 sequence = AAAATATACAAA Gene: Swoo_2816: Xaa-Pro aminopeptidase (EC 3.4.11.9)	Xaa-Pro aminopeptidase (EC 3.4.11.9)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog HypR - Shewanellaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --