Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of HypR in Shewanella halifaxensis HAW-EB4

Properties
Regulator type: Transcription factor
TF locus tag: Shal_2558
Regulator family: GntR/Others
Regulation mode: activator (repressor)
Biological process: Proline and 4-hydrohyproline utilization
Effector: Proline; 4-hydroxyproline
Regulog: HypR - Shewanellaceae
Statistics of regulated genes:
- Genes 14
- Operons 11
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 96 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -32
Score: 4.6
Sequence: ATAGTATAAAAT
Locus tag: Shal_3252
Name: COG2423
Funciton: Predicted ornithine cyclodeaminase, mu-crystallin homolog
Shal_3252
COG2423
Predicted ornithine cyclodeaminase, mu-crystallin homolog
Position: 14
Score: 3.9
Sequence: ATTGTATACGCA
Position: 95
Score: 5.3
Sequence: ATTGTATACAAT
Locus tag: Shal_2554
Name: hypE2
Funciton: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
Locus tag: Shal_2553
Name: hypO
Funciton: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
Shal_2554
hypE2
Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
Shal_2553
hypO
D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
Position: -5
Score: 5.1
Sequence: ATTGTATGCAAA
Locus tag: Shal_3056
Name: colA1
Funciton: Microbial collagenase, secreted (EC 3.4.24.3)
Shal_3056
colA1
Microbial collagenase, secreted (EC 3.4.24.3)
Position: -77
Score: 3.7
Sequence: AAAGTATACACT
Locus tag: Shal_2548
Name: ampP
Funciton: Xaa-Pro aminopeptidase (EC 3.4.11.9)
Shal_2548
ampP
Xaa-Pro aminopeptidase (EC 3.4.11.9)
Position: -125
Score: 3.6
Sequence: TTTGTATATTTT
Locus tag: Shal_0974
Name: prdP
Funciton: Proline dipeptidase
Shal_0974
prdP
Proline dipeptidase
Position: -43
Score: 4.7
Sequence: ATTGTATTCAAT
Locus tag: Shal_0031
Name: colA2
Funciton: Microbial collagenase, secreted (EC 3.4.24.3)
Shal_0031
colA2
Microbial collagenase, secreted (EC 3.4.24.3)
Position: -170
Score: 4.5
Sequence: ATTGTATAAATT
Locus tag: Shal_2840
Name: colA3
Funciton: Microbial collagenase, secreted (EC 3.4.24.3)
Shal_2840
colA3
Microbial collagenase, secreted (EC 3.4.24.3)
Position: -146
Score: 5.3
Sequence: ATTGTATACAAT
Position: -65
Score: 3.9
Sequence: TGCGTATACAAT
Locus tag: Shal_2555
Name: hypD
Funciton: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)
Locus tag: Shal_2556
Name: hypE
Funciton: Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)
Locus tag: Shal_2557
Name: hypH
Funciton: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
Shal_2555
hypD
1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)
Shal_2556
hypE
Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)
Shal_2557
hypH
Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
Position: -68
Score: 5.4
Sequence: ATTGTATACAAA
Locus tag: Shal_3585
Name: putA
Funciton: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
Shal_3585
putA
Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
Position: -26
Score: 4.5
Sequence: AATGTATAAAAT
Locus tag: Shal_1895
Name: pdtP
Funciton: Predicted proline dipeptide/tripeptide permease, MFS family
Shal_1895
pdtP
Predicted proline dipeptide/tripeptide permease, MFS family
Position: -29
Score: 3.6
Sequence: CTTGTATAAATA
Locus tag: Shal_2558
Name: hypR
Funciton: Predicted regulator for proline and hydroxyproline utilization, GntR family
Shal_2558
hypR
Predicted regulator for proline and hydroxyproline utilization, GntR family
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