Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Profile of regulator HypR in Shewanellaceae

Properties
Regulator family: GntR/Others
Regulation mode: activator (repressor)
Biological process: Proline and 4-hydrohyproline utilization
Effector: Proline; 4-hydroxyproline
Regulog: HypR - Shewanellaceae
Member of regulog collections
Transcription factor binding sites
Locus Tag Name Position Score Sequence
Shewanella oneidensis MR-1
SO3774 putA -92 5.4 ATTGTATACAAA
Shewanella putrefaciens CN-32
Sputcn32_3099 putA -74 5.4 ATTGTATACAAA
Shewanella sp W3-18-1
Sputw3181_0845 putA -74 5.4 ATTGTATACAAA
Shewanella sp ANA-3
Shewana3_0819 putA -77 5.4 ATTGTATACAAA
Shewanella sp MR-4
Shewmr4_3122 putA -78 5.4 ATTGTATACAAA
Shewanella sp MR-7
Shewmr7_0850 putA -77 5.4 ATTGTATACAAA
Shewanella baltica OS155
Sbal_3458 putA -74 5.4 ATTGTATACAAA
Shewanella denitrificans OS217
Sden_0888 prdP -50 5.3 ATTGTATACAAT
Sden_0689 putA -119 5.4 ATTGTATACAAA
Shewanella frigidimarina NCIMB 400
Sfri_2628 omp (COG1629) -244 4 ATTGTTTATAAT
Sfri_3046 prdP -138 5.3 ATTGTATACAAT
Sfri_0568 putA -76 5.4 ATTGTATACAAA
Shewanella amazonensis SB2B
Sama_1531 hypD -110 5.3 ATTGTATACAAT
Sama_1532 hypE2 -33 4.6 ATTGCATACATT
Sama_1517 colA2 -48 3.7 AAAATATACAAT
Sama_1077 colA1 -38 5 ATTGCATACAAT
Sama_1534 ampP -61 4.6 ATTGCATGCAAA
Sama_1532 hypE2 -106 5.3 ATTGTATACAAT
Sama_1528 hypR -19 3.4 TTGGTATAAAGA
Sama_1531 hypD -183 4.6 AATGTATGCAAT
Sama_2610 COG2423 -42 3.8 AGTACATACAAT
Sama_2676 putA -99 5.4 ATTGTATACAAA
Shewanella loihica PV-4
Shew_0955 prdP -93 4.7 TTTGTATACATT
Shew_2104 pdtP -26 4.6 AATGCATACAAT
Shew_2743 colA1 -51 5 ATTTTATACAAA
Shew_3732 colA2 -28 4.9 ATTGTATGCAAA
Shew_2955 COG2423 -36 4.7 TTTGCATACAAT
Shew_1685 colA3 -159 4.9 ATTGTATAAAAT
Shew_2358 ampP -65 3.9 AATGAATAAAAT
Shew_2361 hypE2 -32 4.9 ATTGCATACAAA
Shew_2361 hypE2 -118 5.3 ATTGTATACAAT
Shew_2362 hypD -97 5.3 ATTGTATACAAT
Shew_2362 hypD -183 4.9 TTTGTATGCAAT
Shew_0615 putA -92 5.4 ATTGTATACAAA
Shewanella pealeana ATCC 700345
Spea_3170 COG2423 -32 4.6 ATAGTATAAAAT
Spea_1655 hypD2 -52 5.1 ATTTTATACAAT
Spea_0035 colA2 -107 4.7 ATTGTATTCAAT
Spea_2754 colA3 -160 4.5 ATTGTATAAATT
Spea_2966 colA1 -5 5.1 ATTGTATGCAAA
Spea_1711 ampP -71 3.9 AATGAATAAAAT
Spea_1701 hypR -30 3.6 CTTGTATAAATA
Spea_1704 hypD -76 3.9 TGCGTATACAAT
Spea_1704 hypD -157 5.3 ATTGTATACAAT
Spea_1705 hypE2 -43 5.3 ATTGTATACAAT
Spea_1705 hypE2 -124 3.9 ATTGTATACGCA
Spea_2388 pdtP -26 4.5 AATGTATAAAAT
Spea_3490 putA -73 5.4 ATTGTATACAAA
Shewanella halifaxensis HAW-EB4
Shal_3252 COG2423 -32 4.6 ATAGTATAAAAT
Shal_2548 ampP -77 3.7 AAAGTATACACT
Shal_3056 colA1 -5 5.1 ATTGTATGCAAA
Shal_1895 pdtP -26 4.5 AATGTATAAAAT
Shal_0974 prdP -125 3.6 TTTGTATATTTT
Shal_2840 colA3 -170 4.5 ATTGTATAAATT
Shal_0031 colA2 -43 4.7 ATTGTATTCAAT
Shal_2555 hypD -65 3.9 TGCGTATACAAT
Shal_2558 hypR -29 3.6 CTTGTATAAATA
Shal_2554 hypE2 95 5.3 ATTGTATACAAT
Shal_2554 hypE2 14 3.9 ATTGTATACGCA
Shal_2555 hypD -146 5.3 ATTGTATACAAT
Shal_3585 putA -68 5.4 ATTGTATACAAA
Shewanella piezotolerans WP3
swp_1269 colA1 -35 5.1 ATTGTATGCAAA
swp_1984 hypD -138 5.3 ATTGTATACAAT
swp_3286 omp2 (COG1629) -149 4.6 ACTGTATAAAAT
swp_1907 hypD2 -36 4.5 AATGTATGCAAA
swp_1985 hypE2 -41 5.3 ATTGTATACAAT
swp_1985 hypE2 -112 3.3 ATTGTATACGCG
swp_3353 colA3 -216 3.4 ATTGGAGTCAAT
swp_3353 colA3 -359 4.2 ATTGCATAAATT
swp_0061 colA2 -71 3.4 GTTGTATACATC
swp_0061 colA2 -30 4.7 ATTGTATCCAAA
swp_3281 omp (COG1629) -85 5 ATTGCATACAAT
swp_1988 ampP -28 4.2 AATATATACAAT
swp_2320 pdtP 16 4.5 AATGTATAAAAT
swp_0809 putA -83 5.4 ATTGTATACAAA
Shewanella sediminis HAW-EB3
Ssed_3300 colA1 -35 5.4 ATTGTATACAAA
Ssed_3503 COG2423 -31 4.3 ACTGTATCCAAA
Ssed_2005 pdtP -25 4.7 AGTGTATACAAT
Ssed_1762 hypD -171 4.9 TTTGTATGCAAT
Ssed_1762 hypD -98 5.3 ATTGTATACAAT
Ssed_0039 colA2 -28 4.9 ATTGTATGCAAA
Ssed_1763 hypE2 -32 4.9 ATTGCATACAAA
Ssed_1763 hypE2 -105 5.3 ATTGTATACAAT
Ssed_3846 putA -110 5.4 ATTGTATACAAA
Ssed_3846 putA -247 4.1 TGAGTATACAAT
Ssed_1782 ampP -126 4.2 AAAGTATACAAA
Shewanella woodyi ATCC 51908
Swoo_3726 COG2423 -33 4.5 TTGGTATACAAT
Swoo_3449 colA1 -35 4.6 ACTTTATACAAT
Swoo_2598 pdtP -29 4.5 AATGTATAAAAT
Swoo_0042 colA2 -28 4.7 ATTGTATCCAAA
Swoo_2822 hypD -95 5.3 ATTGTATACAAT
Swoo_1099 prdP -126 3.6 TTTGTATATTTT
Swoo_2822 hypD -169 4.9 TTTGTATGCAAT
Swoo_2821 hypE2 -106 5.3 ATTGTATACAAT
Swoo_2821 hypE2 -32 4.9 ATTGCATACAAA
Swoo_0714 putA -124 5.4 ATTGTATACAAA
Swoo_2816 ampP -94 3.6 AAAATATACAAA
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