Profile of regulator HypR in Shewanellaceae
| Regulator family: | GntR/Others |
| Regulation mode: | activator (repressor) |
| Biological process: | Proline and 4-hydrohyproline utilization |
| Effector: | Proline; 4-hydroxyproline |
| Regulog: | HypR - Shewanellaceae |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - HypR
- By TF family - GntR/Others
- By effector - Proline
- By effector - 4-hydroxyproline
- By pathway - Proline and 4-hydrohyproline utilization
Transcription factor binding sites
| Locus Tag | Name | Position | Score | Sequence | |
|---|---|---|---|---|---|
| Shewanella oneidensis MR-1 | |||||
| SO3774 | putA | -92 | 5.4 | ATTGTATACAAA | |
| Shewanella putrefaciens CN-32 | |||||
| Sputcn32_3099 | putA | -74 | 5.4 | ATTGTATACAAA | |
| Shewanella sp W3-18-1 | |||||
| Sputw3181_0845 | putA | -74 | 5.4 | ATTGTATACAAA | |
| Shewanella sp ANA-3 | |||||
| Shewana3_0819 | putA | -77 | 5.4 | ATTGTATACAAA | |
| Shewanella sp MR-4 | |||||
| Shewmr4_3122 | putA | -78 | 5.4 | ATTGTATACAAA | |
| Shewanella sp MR-7 | |||||
| Shewmr7_0850 | putA | -77 | 5.4 | ATTGTATACAAA | |
| Shewanella baltica OS155 | |||||
| Sbal_3458 | putA | -74 | 5.4 | ATTGTATACAAA | |
| Shewanella denitrificans OS217 | |||||
| Sden_0888 | prdP | -50 | 5.3 | ATTGTATACAAT | |
| Sden_0689 | putA | -119 | 5.4 | ATTGTATACAAA | |
| Shewanella frigidimarina NCIMB 400 | |||||
| Sfri_2628 | omp (COG1629) | -244 | 4 | ATTGTTTATAAT | |
| Sfri_3046 | prdP | -138 | 5.3 | ATTGTATACAAT | |
| Sfri_0568 | putA | -76 | 5.4 | ATTGTATACAAA | |
| Shewanella amazonensis SB2B | |||||
| Sama_1531 | hypD | -110 | 5.3 | ATTGTATACAAT | |
| Sama_1532 | hypE2 | -33 | 4.6 | ATTGCATACATT | |
| Sama_1517 | colA2 | -48 | 3.7 | AAAATATACAAT | |
| Sama_1077 | colA1 | -38 | 5 | ATTGCATACAAT | |
| Sama_1534 | ampP | -61 | 4.6 | ATTGCATGCAAA | |
| Sama_1532 | hypE2 | -106 | 5.3 | ATTGTATACAAT | |
| Sama_1528 | hypR | -19 | 3.4 | TTGGTATAAAGA | |
| Sama_1531 | hypD | -183 | 4.6 | AATGTATGCAAT | |
| Sama_2610 | COG2423 | -42 | 3.8 | AGTACATACAAT | |
| Sama_2676 | putA | -99 | 5.4 | ATTGTATACAAA | |
| Shewanella loihica PV-4 | |||||
| Shew_0955 | prdP | -93 | 4.7 | TTTGTATACATT | |
| Shew_2104 | pdtP | -26 | 4.6 | AATGCATACAAT | |
| Shew_2743 | colA1 | -51 | 5 | ATTTTATACAAA | |
| Shew_3732 | colA2 | -28 | 4.9 | ATTGTATGCAAA | |
| Shew_2955 | COG2423 | -36 | 4.7 | TTTGCATACAAT | |
| Shew_1685 | colA3 | -159 | 4.9 | ATTGTATAAAAT | |
| Shew_2358 | ampP | -65 | 3.9 | AATGAATAAAAT | |
| Shew_2361 | hypE2 | -32 | 4.9 | ATTGCATACAAA | |
| Shew_2361 | hypE2 | -118 | 5.3 | ATTGTATACAAT | |
| Shew_2362 | hypD | -97 | 5.3 | ATTGTATACAAT | |
| Shew_2362 | hypD | -183 | 4.9 | TTTGTATGCAAT | |
| Shew_0615 | putA | -92 | 5.4 | ATTGTATACAAA | |
| Shewanella pealeana ATCC 700345 | |||||
| Spea_3170 | COG2423 | -32 | 4.6 | ATAGTATAAAAT | |
| Spea_1655 | hypD2 | -52 | 5.1 | ATTTTATACAAT | |
| Spea_0035 | colA2 | -107 | 4.7 | ATTGTATTCAAT | |
| Spea_2754 | colA3 | -160 | 4.5 | ATTGTATAAATT | |
| Spea_2966 | colA1 | -5 | 5.1 | ATTGTATGCAAA | |
| Spea_1711 | ampP | -71 | 3.9 | AATGAATAAAAT | |
| Spea_1701 | hypR | -30 | 3.6 | CTTGTATAAATA | |
| Spea_1704 | hypD | -76 | 3.9 | TGCGTATACAAT | |
| Spea_1704 | hypD | -157 | 5.3 | ATTGTATACAAT | |
| Spea_1705 | hypE2 | -43 | 5.3 | ATTGTATACAAT | |
| Spea_1705 | hypE2 | -124 | 3.9 | ATTGTATACGCA | |
| Spea_2388 | pdtP | -26 | 4.5 | AATGTATAAAAT | |
| Spea_3490 | putA | -73 | 5.4 | ATTGTATACAAA | |
| Shewanella halifaxensis HAW-EB4 | |||||
| Shal_3252 | COG2423 | -32 | 4.6 | ATAGTATAAAAT | |
| Shal_2548 | ampP | -77 | 3.7 | AAAGTATACACT | |
| Shal_3056 | colA1 | -5 | 5.1 | ATTGTATGCAAA | |
| Shal_1895 | pdtP | -26 | 4.5 | AATGTATAAAAT | |
| Shal_0974 | prdP | -125 | 3.6 | TTTGTATATTTT | |
| Shal_2840 | colA3 | -170 | 4.5 | ATTGTATAAATT | |
| Shal_0031 | colA2 | -43 | 4.7 | ATTGTATTCAAT | |
| Shal_2555 | hypD | -65 | 3.9 | TGCGTATACAAT | |
| Shal_2558 | hypR | -29 | 3.6 | CTTGTATAAATA | |
| Shal_2554 | hypE2 | 95 | 5.3 | ATTGTATACAAT | |
| Shal_2554 | hypE2 | 14 | 3.9 | ATTGTATACGCA | |
| Shal_2555 | hypD | -146 | 5.3 | ATTGTATACAAT | |
| Shal_3585 | putA | -68 | 5.4 | ATTGTATACAAA | |
| Shewanella piezotolerans WP3 | |||||
| swp_1269 | colA1 | -35 | 5.1 | ATTGTATGCAAA | |
| swp_1984 | hypD | -138 | 5.3 | ATTGTATACAAT | |
| swp_3286 | omp2 (COG1629) | -149 | 4.6 | ACTGTATAAAAT | |
| swp_1907 | hypD2 | -36 | 4.5 | AATGTATGCAAA | |
| swp_1985 | hypE2 | -41 | 5.3 | ATTGTATACAAT | |
| swp_1985 | hypE2 | -112 | 3.3 | ATTGTATACGCG | |
| swp_3353 | colA3 | -216 | 3.4 | ATTGGAGTCAAT | |
| swp_3353 | colA3 | -359 | 4.2 | ATTGCATAAATT | |
| swp_0061 | colA2 | -71 | 3.4 | GTTGTATACATC | |
| swp_0061 | colA2 | -30 | 4.7 | ATTGTATCCAAA | |
| swp_3281 | omp (COG1629) | -85 | 5 | ATTGCATACAAT | |
| swp_1988 | ampP | -28 | 4.2 | AATATATACAAT | |
| swp_2320 | pdtP | 16 | 4.5 | AATGTATAAAAT | |
| swp_0809 | putA | -83 | 5.4 | ATTGTATACAAA | |
| Shewanella sediminis HAW-EB3 | |||||
| Ssed_3300 | colA1 | -35 | 5.4 | ATTGTATACAAA | |
| Ssed_3503 | COG2423 | -31 | 4.3 | ACTGTATCCAAA | |
| Ssed_2005 | pdtP | -25 | 4.7 | AGTGTATACAAT | |
| Ssed_1762 | hypD | -171 | 4.9 | TTTGTATGCAAT | |
| Ssed_1762 | hypD | -98 | 5.3 | ATTGTATACAAT | |
| Ssed_0039 | colA2 | -28 | 4.9 | ATTGTATGCAAA | |
| Ssed_1763 | hypE2 | -32 | 4.9 | ATTGCATACAAA | |
| Ssed_1763 | hypE2 | -105 | 5.3 | ATTGTATACAAT | |
| Ssed_3846 | putA | -110 | 5.4 | ATTGTATACAAA | |
| Ssed_3846 | putA | -247 | 4.1 | TGAGTATACAAT | |
| Ssed_1782 | ampP | -126 | 4.2 | AAAGTATACAAA | |
| Shewanella woodyi ATCC 51908 | |||||
| Swoo_3726 | COG2423 | -33 | 4.5 | TTGGTATACAAT | |
| Swoo_3449 | colA1 | -35 | 4.6 | ACTTTATACAAT | |
| Swoo_2598 | pdtP | -29 | 4.5 | AATGTATAAAAT | |
| Swoo_0042 | colA2 | -28 | 4.7 | ATTGTATCCAAA | |
| Swoo_2822 | hypD | -95 | 5.3 | ATTGTATACAAT | |
| Swoo_1099 | prdP | -126 | 3.6 | TTTGTATATTTT | |
| Swoo_2822 | hypD | -169 | 4.9 | TTTGTATGCAAT | |
| Swoo_2821 | hypE2 | -106 | 5.3 | ATTGTATACAAT | |
| Swoo_2821 | hypE2 | -32 | 4.9 | ATTGCATACAAA | |
| Swoo_0714 | putA | -124 | 5.4 | ATTGTATACAAA | |
| Swoo_2816 | ampP | -94 | 3.6 | AAAATATACAAA | |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |