Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of HypR in Shewanella woodyi ATCC 51908

Properties
Regulator type: Transcription factor
TF locus tag: Swoo_2825
Regulator family: GntR/Others
Regulation mode: activator (repressor)
Biological process: Proline and 4-hydrohyproline utilization
Effector: Proline; 4-hydroxyproline
Regulog: HypR - Shewanellaceae
Statistics of regulated genes:
- Genes 13
- Operons 9
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 96 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -33
Score: 4.5
Sequence: TTGGTATACAAT
Locus tag: Swoo_3726
Name: COG2423
Funciton: Predicted ornithine cyclodeaminase, mu-crystallin homolog
Swoo_3726
COG2423
Predicted ornithine cyclodeaminase, mu-crystallin homolog
Position: -29
Score: 4.5
Sequence: AATGTATAAAAT
Locus tag: Swoo_2598
Name: pdtP
Funciton: Predicted proline dipeptide/tripeptide permease, MFS family
Swoo_2598
pdtP
Predicted proline dipeptide/tripeptide permease, MFS family
Position: -35
Score: 4.6
Sequence: ACTTTATACAAT
Locus tag: Swoo_3449
Name: colA1
Funciton: Microbial collagenase, secreted (EC 3.4.24.3)
Swoo_3449
colA1
Microbial collagenase, secreted (EC 3.4.24.3)
Position: -126
Score: 3.6
Sequence: TTTGTATATTTT
Locus tag: Swoo_1099
Name: prdP
Funciton: Proline dipeptidase
Swoo_1099
prdP
Proline dipeptidase
Position: -28
Score: 4.7
Sequence: ATTGTATCCAAA
Locus tag: Swoo_0042
Name: colA2
Funciton: Microbial collagenase, secreted (EC 3.4.24.3)
Swoo_0042
colA2
Microbial collagenase, secreted (EC 3.4.24.3)
Position: -124
Score: 5.4
Sequence: ATTGTATACAAA
Locus tag: Swoo_0714
Name: putA
Funciton: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
Swoo_0714
putA
Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
Position: -94
Score: 3.6
Sequence: AAAATATACAAA
Locus tag: Swoo_2816
Name: ampP
Funciton: Xaa-Pro aminopeptidase (EC 3.4.11.9)
Swoo_2816
ampP
Xaa-Pro aminopeptidase (EC 3.4.11.9)
Position: -106
Score: 5.3
Sequence: ATTGTATACAAT
Position: -32
Score: 4.9
Sequence: ATTGCATACAAA
Locus tag: Swoo_2821
Name: hypE2
Funciton: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
Locus tag: Swoo_2820
Name: hypO
Funciton: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
Swoo_2821
hypE2
Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
Swoo_2820
hypO
D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
Position: -169
Score: 4.9
Sequence: TTTGTATGCAAT
Position: -95
Score: 5.3
Sequence: ATTGTATACAAT
Locus tag: Swoo_2822
Name: hypD
Funciton: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)
Locus tag: Swoo_2823
Name: hypE
Funciton: Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)
Locus tag: Swoo_2824
Name: hypH
Funciton: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
Locus tag: Swoo_2825
Name: hypR
Funciton: Predicted regulator for proline and hydroxyproline utilization, GntR family
Swoo_2822
hypD
1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)
Swoo_2823
hypE
Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)
Swoo_2824
hypH
Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
Swoo_2825
hypR
Predicted regulator for proline and hydroxyproline utilization, GntR family
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