Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of HypR in Shewanella piezotolerans WP3

Properties
Regulator type: Transcription factor
TF locus tag: swp_1981
Regulator family: GntR/Others
Regulation mode: activator (repressor)
Biological process: Proline and 4-hydrohyproline utilization
Effector: Proline; 4-hydroxyproline
Regulog: HypR - Shewanellaceae
Statistics of regulated genes:
- Genes 14
- Operons 11
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 96 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -35
Score: 5.1
Sequence: ATTGTATGCAAA
Locus tag: swp_1269
Name: colA1
Funciton: Microbial collagenase, secreted (EC 3.4.24.3)
swp_1269
colA1
Microbial collagenase, secreted (EC 3.4.24.3)
Position: -149
Score: 4.6
Sequence: ACTGTATAAAAT
Locus tag: swp_3286
Name: omp2 (COG1629)
Funciton: TonB-dependent receptor
swp_3286
omp2 (COG1629)
TonB-dependent receptor
Position: -36
Score: 4.5
Sequence: AATGTATGCAAA
Locus tag: swp_1907
Name: hypD2
Funciton: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted
swp_1907
hypD2
1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted
Position: -71
Score: 3.4
Sequence: GTTGTATACATC
Position: -30
Score: 4.7
Sequence: ATTGTATCCAAA
Locus tag: swp_0061
Name: colA2
Funciton: Microbial collagenase, secreted (EC 3.4.24.3)
swp_0061
colA2
Microbial collagenase, secreted (EC 3.4.24.3)
Position: -28
Score: 4.2
Sequence: AATATATACAAT
Locus tag: swp_1988
Name: ampP
Funciton: Xaa-Pro aminopeptidase (EC 3.4.11.9)
swp_1988
ampP
Xaa-Pro aminopeptidase (EC 3.4.11.9)
Position: -85
Score: 5
Sequence: ATTGCATACAAT
Locus tag: swp_3281
Name: omp (COG1629)
Funciton: TonB-dependent receptor
swp_3281
omp (COG1629)
TonB-dependent receptor
Position: -359
Score: 4.2
Sequence: ATTGCATAAATT
Position: -216
Score: 3.4
Sequence: ATTGGAGTCAAT
Locus tag: swp_3353
Name: colA3
Funciton: Microbial collagenase, secreted (EC 3.4.24.3)
swp_3353
colA3
Microbial collagenase, secreted (EC 3.4.24.3)
Position: -83
Score: 5.4
Sequence: ATTGTATACAAA
Locus tag: swp_0809
Name: putA
Funciton: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
swp_0809
putA
Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
Position: 16
Score: 4.5
Sequence: AATGTATAAAAT
Locus tag: swp_2320
Name: pdtP
Funciton: Predicted proline dipeptide/tripeptide permease, MFS family
swp_2320
pdtP
Predicted proline dipeptide/tripeptide permease, MFS family
Position: -138
Score: 5.3
Sequence: ATTGTATACAAT
Locus tag: swp_1984
Name: hypD
Funciton: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)
Locus tag: swp_1983
Name: hypE
Funciton: Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)
Locus tag: swp_1982
Name: hypH
Funciton: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
swp_1984
hypD
1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)
swp_1983
hypE
Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)
swp_1982
hypH
Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
Position: -112
Score: 3.3
Sequence: ATTGTATACGCG
Position: -41
Score: 5.3
Sequence: ATTGTATACAAT
Locus tag: swp_1985
Name: hypE2
Funciton: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
Locus tag: swp_1986
Name: hypO
Funciton: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
swp_1985
hypE2
Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
swp_1986
hypO
D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
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