Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of HypR in Shewanella loihica PV-4

Properties
Regulator type: Transcription factor
TF locus tag: Shew_2365
Regulator family: GntR/Others
Regulation mode: activator (repressor)
Biological process: Proline and 4-hydrohyproline utilization
Effector: Proline; 4-hydroxyproline
Regulog: HypR - Shewanellaceae
Statistics of regulated genes:
- Genes 14
- Operons 10
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 96 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -36
Score: 4.7
Sequence: TTTGCATACAAT
Locus tag: Shew_2955
Name: COG2423
Funciton: Predicted ornithine cyclodeaminase, mu-crystallin homolog
Shew_2955
COG2423
Predicted ornithine cyclodeaminase, mu-crystallin homolog
Position: -51
Score: 5
Sequence: ATTTTATACAAA
Locus tag: Shew_2743
Name: colA1
Funciton: Microbial collagenase, secreted (EC 3.4.24.3)
Shew_2743
colA1
Microbial collagenase, secreted (EC 3.4.24.3)
Position: -118
Score: 5.3
Sequence: ATTGTATACAAT
Position: -32
Score: 4.9
Sequence: ATTGCATACAAA
Locus tag: Shew_2361
Name: hypE2
Funciton: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
Locus tag: Shew_2360
Name: hypO
Funciton: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
Shew_2361
hypE2
Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
Shew_2360
hypO
D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
Position: -28
Score: 4.9
Sequence: ATTGTATGCAAA
Locus tag: Shew_3732
Name: colA2
Funciton: Microbial collagenase, secreted (EC 3.4.24.3)
Shew_3732
colA2
Microbial collagenase, secreted (EC 3.4.24.3)
Position: -65
Score: 3.9
Sequence: AATGAATAAAAT
Locus tag: Shew_2358
Name: ampP
Funciton: Xaa-Pro aminopeptidase (EC 3.4.11.9)
Shew_2358
ampP
Xaa-Pro aminopeptidase (EC 3.4.11.9)
Position: -93
Score: 4.7
Sequence: TTTGTATACATT
Locus tag: Shew_0955
Name: prdP
Funciton: Proline dipeptidase
Shew_0955
prdP
Proline dipeptidase
Position: -159
Score: 4.9
Sequence: ATTGTATAAAAT
Locus tag: Shew_1685
Name: colA3
Funciton: Microbial collagenase, secreted (EC 3.4.24.3)
Shew_1685
colA3
Microbial collagenase, secreted (EC 3.4.24.3)
Position: -92
Score: 5.4
Sequence: ATTGTATACAAA
Locus tag: Shew_0615
Name: putA
Funciton: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
Shew_0615
putA
Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
Position: -26
Score: 4.6
Sequence: AATGCATACAAT
Locus tag: Shew_2104
Name: pdtP
Funciton: Predicted proline dipeptide/tripeptide permease, MFS family
Shew_2104
pdtP
Predicted proline dipeptide/tripeptide permease, MFS family
Position: -183
Score: 4.9
Sequence: TTTGTATGCAAT
Position: -97
Score: 5.3
Sequence: ATTGTATACAAT
Locus tag: Shew_2362
Name: hypD
Funciton: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)
Locus tag: Shew_2363
Name: hypE
Funciton: Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)
Locus tag: Shew_2364
Name: hypH
Funciton: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
Locus tag: Shew_2365
Name: hypR
Funciton: Predicted regulator for proline and hydroxyproline utilization, GntR family
Shew_2362
hypD
1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)
Shew_2363
hypE
Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)
Shew_2364
hypH
Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
Shew_2365
hypR
Predicted regulator for proline and hydroxyproline utilization, GntR family
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