Regulon of HypR in Shewanella amazonensis SB2B
| Regulator type: | Transcription factor |
| TF locus tag: | Sama_1528 |
| Regulator family: | GntR/Others |
| Regulation mode: | activator (repressor) |
| Biological process: | Proline and 4-hydrohyproline utilization |
| Effector: | Proline; 4-hydroxyproline |
| Regulog: | HypR - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 11 |
| - Operons | 7 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - HypR
- By TF family - GntR/Others
- By effector - Proline
- By effector - 4-hydroxyproline
- By pathway - Proline and 4-hydrohyproline utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -38
Score: 5 Sequence: ATTGCATACAAT
Locus tag: Sama_1077
Name: colA1 Funciton: Microbial collagenase, secreted (EC 3.4.24.3) |
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colA1
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Microbial collagenase, secreted (EC 3.4.24.3)
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Position: -106
Score: 5.3 Sequence: ATTGTATACAAT
Position: -33
Score: 4.6 Sequence: ATTGCATACATT
Locus tag: Sama_1532
Name: hypE2 Funciton: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
Locus tag: Sama_1533
Name: hypO Funciton: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster |
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hypE2
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Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
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hypO
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D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
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Position: -48
Score: 3.7 Sequence: AAAATATACAAT
Locus tag: Sama_1517
Name: colA2 Funciton: Microbial collagenase, secreted (EC 3.4.24.3) |
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colA2
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Microbial collagenase, secreted (EC 3.4.24.3)
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Position: -61
Score: 4.6 Sequence: ATTGCATGCAAA
Locus tag: Sama_1534
Name: ampP Funciton: Xaa-Pro aminopeptidase (EC 3.4.11.9) |
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ampP
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Xaa-Pro aminopeptidase (EC 3.4.11.9)
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Position: -42
Score: 3.8 Sequence: AGTACATACAAT
Locus tag: Sama_2610
Name: COG2423 Funciton: Predicted ornithine cyclodeaminase, mu-crystallin homolog |
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COG2423
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Predicted ornithine cyclodeaminase, mu-crystallin homolog
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Position: -183
Score: 4.6 Sequence: AATGTATGCAAT
Position: -110
Score: 5.3 Sequence: ATTGTATACAAT
Position: -19
Score: 3.4 Sequence: TTGGTATAAAGA
Locus tag: Sama_1531
Name: hypD Funciton: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)
Locus tag: Sama_1530
Name: hypE Funciton: Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)
Locus tag: Sama_1529
Name: hypH Funciton: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
Locus tag: Sama_1528
Name: hypR Funciton: Predicted regulator for proline and hydroxyproline utilization, GntR family |
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hypD
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1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)
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hypE
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Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)
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hypH
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Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
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hypR
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Predicted regulator for proline and hydroxyproline utilization, GntR family
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Position: -99
Score: 5.4 Sequence: ATTGTATACAAA
Locus tag: Sama_2676
Name: putA Funciton: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) |
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putA
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Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |