Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of HypR in Shewanella amazonensis SB2B

Properties
Regulator type: Transcription factor
TF locus tag: Sama_1528
Regulator family: GntR/Others
Regulation mode: activator (repressor)
Biological process: Proline and 4-hydrohyproline utilization
Effector: Proline; 4-hydroxyproline
Regulog: HypR - Shewanellaceae
Statistics of regulated genes:
- Genes 11
- Operons 7
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 96 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -38
Score: 5
Sequence: ATTGCATACAAT
Locus tag: Sama_1077
Name: colA1
Funciton: Microbial collagenase, secreted (EC 3.4.24.3)
colA1
Microbial collagenase, secreted (EC 3.4.24.3)

Position: -106
Score: 5.3
Sequence: ATTGTATACAAT
Position: -33
Score: 4.6
Sequence: ATTGCATACATT
Locus tag: Sama_1532
Name: hypE2
Funciton: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
Locus tag: Sama_1533
Name: hypO
Funciton: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
hypE2
Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
hypO
D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster

Position: -48
Score: 3.7
Sequence: AAAATATACAAT
Locus tag: Sama_1517
Name: colA2
Funciton: Microbial collagenase, secreted (EC 3.4.24.3)
colA2
Microbial collagenase, secreted (EC 3.4.24.3)

Position: -61
Score: 4.6
Sequence: ATTGCATGCAAA
Locus tag: Sama_1534
Name: ampP
Funciton: Xaa-Pro aminopeptidase (EC 3.4.11.9)
ampP
Xaa-Pro aminopeptidase (EC 3.4.11.9)

Position: -42
Score: 3.8
Sequence: AGTACATACAAT
Locus tag: Sama_2610
Name: COG2423
Funciton: Predicted ornithine cyclodeaminase, mu-crystallin homolog
COG2423
Predicted ornithine cyclodeaminase, mu-crystallin homolog

Position: -183
Score: 4.6
Sequence: AATGTATGCAAT
Position: -110
Score: 5.3
Sequence: ATTGTATACAAT
Position: -19
Score: 3.4
Sequence: TTGGTATAAAGA
Locus tag: Sama_1531
Name: hypD
Funciton: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)
Locus tag: Sama_1530
Name: hypE
Funciton: Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)
Locus tag: Sama_1529
Name: hypH
Funciton: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
Locus tag: Sama_1528
Name: hypR
Funciton: Predicted regulator for proline and hydroxyproline utilization, GntR family
hypD
1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)
hypE
Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)
hypH
Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
hypR
Predicted regulator for proline and hydroxyproline utilization, GntR family

Position: -99
Score: 5.4
Sequence: ATTGTATACAAA
Locus tag: Sama_2676
Name: putA
Funciton: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
putA
Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD