Regulon of HypR in Shewanella amazonensis SB2B

Properties
Regulator type:	Transcription factor
TF locus tag:	Sama_1528
Regulator family:	GntR/Others
Regulation mode:	activator (repressor)
Biological process:	Proline and 4-hydrohyproline utilization
Effector:	Proline; 4-hydroxyproline
Regulog:	HypR - Shewanellaceae
Statistics of regulated genes:
- Genes	11
- Operons	7
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 96 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - HypR
By TF family - GntR/Others
By effector - Proline
By effector - 4-hydroxyproline
By pathway - Proline and 4-hydrohyproline utilization

Regulated operons
	Locus Tag	Name	Function
Position: -38 Score: 5 Sequence: ATTGCATACAAT Locus tag: Sama_1077 Name: colA1 Funciton: Microbial collagenase, secreted (EC 3.4.24.3)
	Sama_1077	colA1	Microbial collagenase, secreted (EC 3.4.24.3)
Position: -106 Score: 5.3 Sequence: ATTGTATACAAT Position: -33 Score: 4.6 Sequence: ATTGCATACATT Locus tag: Sama_1532 Name: hypE2 Funciton: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8) Locus tag: Sama_1533 Name: hypO Funciton: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
	Sama_1532	hypE2	Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
	Sama_1533	hypO	D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
Position: -48 Score: 3.7 Sequence: AAAATATACAAT Locus tag: Sama_1517 Name: colA2 Funciton: Microbial collagenase, secreted (EC 3.4.24.3)
	Sama_1517	colA2	Microbial collagenase, secreted (EC 3.4.24.3)
Position: -61 Score: 4.6 Sequence: ATTGCATGCAAA Locus tag: Sama_1534 Name: ampP Funciton: Xaa-Pro aminopeptidase (EC 3.4.11.9)
	Sama_1534	ampP	Xaa-Pro aminopeptidase (EC 3.4.11.9)
Position: -42 Score: 3.8 Sequence: AGTACATACAAT Locus tag: Sama_2610 Name: COG2423 Funciton: Predicted ornithine cyclodeaminase, mu-crystallin homolog
	Sama_2610	COG2423	Predicted ornithine cyclodeaminase, mu-crystallin homolog
Position: -183 Score: 4.6 Sequence: AATGTATGCAAT Position: -110 Score: 5.3 Sequence: ATTGTATACAAT Position: -19 Score: 3.4 Sequence: TTGGTATAAAGA Locus tag: Sama_1531 Name: hypD Funciton: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) Locus tag: Sama_1530 Name: hypE Funciton: Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8) Locus tag: Sama_1529 Name: hypH Funciton: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible Locus tag: Sama_1528 Name: hypR Funciton: Predicted regulator for proline and hydroxyproline utilization, GntR family
	Sama_1531	hypD	1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)
	Sama_1530	hypE	Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)
	Sama_1529	hypH	Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
	Sama_1528	hypR	Predicted regulator for proline and hydroxyproline utilization, GntR family
Position: -99 Score: 5.4 Sequence: ATTGTATACAAA Locus tag: Sama_2676 Name: putA Funciton: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
	Sama_2676	putA	Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD