Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of HypR in Shewanella pealeana ATCC 700345

Properties
Regulator type: Transcription factor
TF locus tag: Spea_1701
Regulator family: GntR/Others
Regulation mode: activator (repressor)
Biological process: Proline and 4-hydrohyproline utilization
Effector: Proline; 4-hydroxyproline
Regulog: HypR - Shewanellaceae
Statistics of regulated genes:
- Genes 14
- Operons 11
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 96 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -5
Score: 5.1
Sequence: ATTGTATGCAAA
Locus tag: Spea_2966
Name: colA1
Funciton: Microbial collagenase, secreted (EC 3.4.24.3)
Spea_2966
colA1
Microbial collagenase, secreted (EC 3.4.24.3)
Position: -32
Score: 4.6
Sequence: ATAGTATAAAAT
Locus tag: Spea_3170
Name: COG2423
Funciton: Predicted ornithine cyclodeaminase, mu-crystallin homolog
Spea_3170
COG2423
Predicted ornithine cyclodeaminase, mu-crystallin homolog
Position: -52
Score: 5.1
Sequence: ATTTTATACAAT
Locus tag: Spea_1655
Name: hypD2
Funciton: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted
Spea_1655
hypD2
1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted
Position: -107
Score: 4.7
Sequence: ATTGTATTCAAT
Locus tag: Spea_0035
Name: colA2
Funciton: Microbial collagenase, secreted (EC 3.4.24.3)
Spea_0035
colA2
Microbial collagenase, secreted (EC 3.4.24.3)
Position: -157
Score: 5.3
Sequence: ATTGTATACAAT
Position: -76
Score: 3.9
Sequence: TGCGTATACAAT
Locus tag: Spea_1704
Name: hypD
Funciton: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)
Locus tag: Spea_1703
Name: hypE
Funciton: Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)
Locus tag: Spea_1702
Name: hypH
Funciton: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
Spea_1704
hypD
1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22)
Spea_1703
hypE
Proline racemase / 4-hydroxyproline epimerase (EC 5.1.1.8)
Spea_1702
hypH
Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
Position: -30
Score: 3.6
Sequence: CTTGTATAAATA
Locus tag: Spea_1701
Name: hypR
Funciton: Predicted regulator for proline and hydroxyproline utilization, GntR family
Spea_1701
hypR
Predicted regulator for proline and hydroxyproline utilization, GntR family
Position: -71
Score: 3.9
Sequence: AATGAATAAAAT
Locus tag: Spea_1711
Name: ampP
Funciton: Xaa-Pro aminopeptidase (EC 3.4.11.9)
Spea_1711
ampP
Xaa-Pro aminopeptidase (EC 3.4.11.9)
Position: -160
Score: 4.5
Sequence: ATTGTATAAATT
Locus tag: Spea_2754
Name: colA3
Funciton: Microbial collagenase, secreted (EC 3.4.24.3)
Spea_2754
colA3
Microbial collagenase, secreted (EC 3.4.24.3)
Position: -26
Score: 4.5
Sequence: AATGTATAAAAT
Locus tag: Spea_2388
Name: pdtP
Funciton: Predicted proline dipeptide/tripeptide permease, MFS family
Spea_2388
pdtP
Predicted proline dipeptide/tripeptide permease, MFS family
Position: -73
Score: 5.4
Sequence: ATTGTATACAAA
Locus tag: Spea_3490
Name: putA
Funciton: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
Spea_3490
putA
Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
Position: -124
Score: 3.9
Sequence: ATTGTATACGCA
Position: -43
Score: 5.3
Sequence: ATTGTATACAAT
Locus tag: Spea_1705
Name: hypE2
Funciton: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
Locus tag: Spea_1706
Name: hypO
Funciton: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
Spea_1705
hypE2
Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
Spea_1706
hypO
D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
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