Regulon of GcvA in Shewanella sediminis HAW-EB3

Properties
Regulator type:	Transcription factor
TF locus tag:	Ssed_3322
Regulator family:	LysR
Regulation mode:	activator (repressor)
Biological process:	Glycine metabolism
Effector:	Glycine
Regulog:	GcvA - Shewanellaceae
Statistics of regulated genes:
- Genes	10
- Operons	6
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 108 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By TF family - LysR
By effector - Glycine
By pathway - Glycine metabolism

Regulated operons
	Locus Tag	Name	Function
Position: -97 Score: 5.1 Sequence: ATTAAAATATCTAAT Locus tag: Ssed_1246 Name: SO3342 Funciton: putative membrane protein
	Ssed_1246	SO3342	putative membrane protein
Position: -278 Score: 5.2 Sequence: ATTAGTTTTTCTTAT Locus tag: Ssed_1852 Name: SO2753 Funciton: Prolyl endopeptidase (EC 3.4.21.26)
	Ssed_1852	SO2753	Prolyl endopeptidase (EC 3.4.21.26)
Position: -187 Score: 4.8 Sequence: ATTAAAAAATCTCAT Locus tag: Ssed_2838 Name: sdaA Funciton: L-serine dehydratase 1 (EC 4.3.1.17)
	Ssed_2838	sdaA	L-serine dehydratase 1 (EC 4.3.1.17)
Position: -213 Score: 4.8 Sequence: ATGAGAAAAAGTAAT Locus tag: Ssed_3675 Name: gcvT Funciton: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) Locus tag: Ssed_3674 Name: gcvH Funciton: Glycine cleavage system H protein Locus tag: Ssed_3673 Name: gcvP Funciton: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
	Ssed_3675	gcvT	Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
	Ssed_3674	gcvH	Glycine cleavage system H protein
	Ssed_3673	gcvP	Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
Position: -38 Score: 5.6 Sequence: ATTAGAAAAACTAAT Locus tag: Ssed_3322 Name: gcvA Funciton: Glycine cleavage system transcriptional activator GcvA Locus tag: Ssed_3321 Name: SO1534 Funciton: Predicted hydrolase of the alpha/beta-hydrolase fold
	Ssed_3322	gcvA	Glycine cleavage system transcriptional activator GcvA
	Ssed_3321	SO1534	Predicted hydrolase of the alpha/beta-hydrolase fold
Position: -148 Score: 4.7 Sequence: ATTAGTTTTATTCAT Locus tag: Ssed_0101 Name: kbl Funciton: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) Locus tag: Ssed_0100 Name: tdh Funciton: L-threonine 3-dehydrogenase (EC 1.1.1.103)
	Ssed_0101	kbl	2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)
	Ssed_0100	tdh	L-threonine 3-dehydrogenase (EC 1.1.1.103)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD