Regulog GcvA - Shewanellaceae

Properties
Regulator type:	Transcription factor
Regulator family:	LysR
Regulation mode:	activator (repressor)
Biological process:	Glycine metabolism
Effector:	Glycine
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 108 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By TF family - LysR
By effector - Glycine
By pathway - Glycine metabolism

Statistics of regulated genes
Genome	Genes	Operons
Shewanella oneidensis MR-1	11	7
Shewanella putrefaciens CN-32	11	7
Shewanella sp W3-18-1	11	7
Shewanella sp ANA-3	11	7
Shewanella sp MR-4	11	7
Shewanella sp MR-7	11	7
Shewanella baltica OS155	11	7
Shewanella denitrificans OS217	8	4
Shewanella frigidimarina NCIMB 400	9	5
Shewanella amazonensis SB2B	10	6
Shewanella loihica PV-4	8	5
Shewanella pealeana ATCC 700345	12	7
Shewanella halifaxensis HAW-EB4	12	7
Shewanella piezotolerans WP3	12	7
Shewanella sediminis HAW-EB3	10	6
Shewanella woodyi ATCC 51908	10	6

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																	Function

CRON 1.
SO3342	* Shewanella oneidensis MR-1 Site: position = -99 score = 5.07761 sequence = ATTATATATTCTAAT Gene: SO_3342: putative membrane protein	* Shewanella putrefaciens CN-32 Site: position = -85 score = 5.00321 sequence = ATTATTTTTTCTAAT Gene: Sputcn32_2677: putative membrane protein	* Shewanella sp W3-18-1 Site: position = -85 score = 5.00321 sequence = ATTATTTTTTCTAAT Gene: Sputw3181_1334: putative membrane protein	* Shewanella sp ANA-3 Site: position = -99 score = 4.8389 sequence = ATGAAATATTCTAAT Site: position = -77 score = 4.22307 sequence = TTTAAATAATCTCAT Gene: Shewana3_1204: putative membrane protein	* Shewanella sp MR-4 Site: position = -99 score = 5.07761 sequence = ATTAAATATTCTAAT Site: position = -77 score = 4.22307 sequence = TTTAAATAATCTCAT Gene: Shewmr4_1203: putative membrane protein	* Shewanella sp MR-7 Site: position = -99 score = 5.07761 sequence = ATTAAATATTCTAAT Site: position = -77 score = 4.22307 sequence = TTTAAATAATCTCAT Gene: Shewmr7_1274: putative membrane protein	* Shewanella baltica OS155 Site: position = -97 score = 5.00321 sequence = ATTAATTTTTCTAAT Gene: Sbal_3015: putative membrane protein	Shewanella denitrificans OS217	* Shewanella frigidimarina NCIMB 400 Site: position = -171 score = 4.29993 sequence = ATTATTAAAACTATT Site: position = -96 score = 5.01625 sequence = ATTAGATTAATTAAT Gene: Sfri_0596: putative membrane protein	* Shewanella amazonensis SB2B Site: position = -113 score = 4.58665 sequence = ATAATAAAAACTAAT Gene: Sama_2463: putative membrane protein	* Shewanella loihica PV-4 Site: position = -97 score = 5.07761 sequence = ATTAAAAAATCTAAT Gene: Shew_1154: putative membrane protein	* Shewanella pealeana ATCC 700345 Site: position = -96 score = 5.07761 sequence = ATTAGAAAATGTAAT Gene: Spea_1141: putative membrane protein	* Shewanella halifaxensis HAW-EB4 Site: position = -96 score = 5.07761 sequence = ATTAGAAAATATAAT Gene: Shal_1186: putative membrane protein	* Shewanella piezotolerans WP3 Site: position = -95 score = 5.00321 sequence = ATTAGTTTTTTTAAT Gene: swp_1289: putative membrane protein	* Shewanella sediminis HAW-EB3 Site: position = -97 score = 5.07761 sequence = ATTAAAATATCTAAT Gene: Ssed_1246: putative membrane protein	* Shewanella woodyi ATCC 51908 Site: position = -173 score = 4.57734 sequence = ATTAGCTAAACTAAA Site: position = -98 score = 5.63208 sequence = ATTAGAAAAACTAAT Gene: Swoo_1346: putative membrane protein	putative membrane protein

CRON 2.
kbl	* Shewanella oneidensis MR-1 Site: position = -148 score = 5.00321 sequence = ATTAGTTTTTATAAT Gene: SO_4674: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)	* Shewanella putrefaciens CN-32 Site: position = -148 score = 5.00321 sequence = ATTAGTTTTTATAAT Gene: Sputcn32_3901: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)	* Shewanella sp W3-18-1 Site: position = -148 score = 5.00321 sequence = ATTAGTTTTTATAAT Gene: Sputw3181_0050: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)	* Shewanella sp ANA-3 Site: position = -148 score = 5.00321 sequence = ATTAGTTTTTATAAT Gene: Shewana3_4104: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)	* Shewanella sp MR-4 Site: position = -148 score = 5.00321 sequence = ATTAGTTTTTATAAT Gene: Shewmr4_3900: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)	* Shewanella sp MR-7 Site: position = -148 score = 5.00321 sequence = ATTAGTTTTTATAAT Gene: Shewmr7_3992: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)	* Shewanella baltica OS155 Site: position = -148 score = 5.00321 sequence = ATTAGTTTTTATAAT Gene: Sbal_0058: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)	* Shewanella denitrificans OS217 Site: position = -140 score = 5.69345 sequence = ATTAGAATTTCTAAT Gene: Sden_3615: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)	* Shewanella frigidimarina NCIMB 400 Site: position = -191 score = 5.00321 sequence = ATTAGTTTTTTTAAT Gene: Sfri_3938: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)	* Shewanella amazonensis SB2B Site: position = -150 score = 4.58665 sequence = ATTAGTTTTTTTTAT Gene: Sama_0098: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)	Shewanella loihica PV-4 Gene: Shew_3709: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)	* Shewanella pealeana ATCC 700345 Site: position = -147 score = 5.57072 sequence = ATTAGTTTAACTAAT Gene: Spea_0107: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)	* Shewanella halifaxensis HAW-EB4 Site: position = -147 score = 5.20621 sequence = ATTAGTTTAGCTAAT Gene: Shal_4215: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)	* Shewanella piezotolerans WP3 Site: position = -148 score = 5.57072 sequence = ATTAGTTTAACTAAT Gene: swp_5067: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)	* Shewanella sediminis HAW-EB3 Site: position = -148 score = 4.69009 sequence = ATTAGTTTTATTCAT Gene: Ssed_0101: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)	* Shewanella woodyi ATCC 51908 Site: position = -148 score = 4.58665 sequence = ATTAGTTTTTTTTAT Gene: Swoo_0065: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)	2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)
tdh	Shewanella oneidensis MR-1 Gene: SO_4673: L-threonine 3-dehydrogenase (EC 1.1.1.103)	Shewanella putrefaciens CN-32 Gene: Sputcn32_3902: L-threonine 3-dehydrogenase (EC 1.1.1.103)	Shewanella sp W3-18-1 Gene: Sputw3181_0049: L-threonine 3-dehydrogenase (EC 1.1.1.103)	Shewanella sp ANA-3 Gene: Shewana3_4105: L-threonine 3-dehydrogenase (EC 1.1.1.103)	Shewanella sp MR-4 Gene: Shewmr4_3901: L-threonine 3-dehydrogenase (EC 1.1.1.103)	Shewanella sp MR-7 Gene: Shewmr7_3993: L-threonine 3-dehydrogenase (EC 1.1.1.103)	Shewanella baltica OS155 Gene: Sbal_0057: L-threonine 3-dehydrogenase (EC 1.1.1.103)	Shewanella denitrificans OS217 Gene: Sden_3616: L-threonine 3-dehydrogenase (EC 1.1.1.103)	Shewanella frigidimarina NCIMB 400 Gene: Sfri_3939: L-threonine 3-dehydrogenase (EC 1.1.1.103)	Shewanella amazonensis SB2B Gene: Sama_0097: L-threonine 3-dehydrogenase (EC 1.1.1.103)	Shewanella loihica PV-4 Gene: Shew_3710: L-threonine 3-dehydrogenase (EC 1.1.1.103)	Shewanella pealeana ATCC 700345 Gene: Spea_0106: L-threonine 3-dehydrogenase (EC 1.1.1.103)	Shewanella halifaxensis HAW-EB4 Gene: Shal_4216: L-threonine 3-dehydrogenase (EC 1.1.1.103)	Shewanella piezotolerans WP3 Gene: swp_5068: L-threonine 3-dehydrogenase (EC 1.1.1.103)	Shewanella sediminis HAW-EB3 Gene: Ssed_0100: L-threonine 3-dehydrogenase (EC 1.1.1.103)	Shewanella woodyi ATCC 51908 Gene: Swoo_0064: L-threonine 3-dehydrogenase (EC 1.1.1.103)	L-threonine 3-dehydrogenase (EC 1.1.1.103)

CRON 3.
SO2753	* Shewanella oneidensis MR-1 Site: position = -256 score = 5.20621 sequence = ATTAGCTAAACTAAT Gene: SO_2753: Prolyl endopeptidase (EC 3.4.21.26)	* Shewanella putrefaciens CN-32 Site: position = -255 score = 5.26758 sequence = ATTAGCAAATCTAAT Gene: Sputcn32_1602: Prolyl endopeptidase (EC 3.4.21.26)	* Shewanella sp W3-18-1 Site: position = -255 score = 5.26758 sequence = ATTAGCAAATCTAAT Gene: Sputw3181_2420: Prolyl endopeptidase (EC 3.4.21.26)	* Shewanella sp ANA-3 Site: position = -255 score = 5.19317 sequence = ATTAGCAAAACTAAT Gene: Shewana3_2536: Prolyl endopeptidase (EC 3.4.21.26)	* Shewanella sp MR-4 Site: position = -255 score = 5.19317 sequence = ATTAGCAAAACTAAT Gene: Shewmr4_2373: Prolyl endopeptidase (EC 3.4.21.26)	* Shewanella sp MR-7 Site: position = -255 score = 5.19317 sequence = ATTAGCAAAACTAAT Gene: Shewmr7_2445: Prolyl endopeptidase (EC 3.4.21.26)	* Shewanella baltica OS155 Site: position = -254 score = 5.61904 sequence = ATTAGTAATTCTAAT Gene: Sbal_1741: Prolyl endopeptidase (EC 3.4.21.26)	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	* Shewanella amazonensis SB2B Site: position = -247 score = 5.57072 sequence = ATTAGTTTAACTAAT Gene: Sama_2091: Prolyl endopeptidase (EC 3.4.21.26)	* Shewanella loihica PV-4 Site: position = -336 score = 5.61904 sequence = ATTAGtaTtTCTAAT Gene: Shew_1522: Prolyl endopeptidase (EC 3.4.21.26)	* Shewanella pealeana ATCC 700345 Site: position = -79 score = 5.30297 sequence = ATAAGATTATCTAAT Gene: Spea_2569: Prolyl endopeptidase (EC 3.4.21.26)	* Shewanella halifaxensis HAW-EB4 Site: position = -84 score = 5.06425 sequence = ATAAGATTATCTCAT Gene: Shal_1686: Prolyl endopeptidase (EC 3.4.21.26)	* Shewanella piezotolerans WP3 Site: position = -310 score = 5.55768 sequence = ATTAGtTTtaCTAAT Gene: swp_1825: Prolyl endopeptidase (EC 3.4.21.26)	* Shewanella sediminis HAW-EB3 Site: position = -278 score = 5.21552 sequence = ATTAGTTTTTCTTAT Gene: Ssed_1852: Prolyl endopeptidase (EC 3.4.21.26)	* Shewanella woodyi ATCC 51908 Site: position = -280 score = 5.64512 sequence = ATTAGTTTATCTAAT Gene: Swoo_2736: Prolyl endopeptidase (EC 3.4.21.26)	Prolyl endopeptidase (EC 3.4.21.26)

CRON 4.
sdaA	* Shewanella oneidensis MR-1 Site: position = -199 score = 4.41155 sequence = ATCAAAAAAACTAAT Gene: SO_2248: L-serine dehydratase 1 (EC 4.3.1.17)	* Shewanella putrefaciens CN-32 Site: position = -202 score = 4.41155 sequence = ATCAAAAAAACTAAT Gene: Sputcn32_2171: L-serine dehydratase 1 (EC 4.3.1.17)	* Shewanella sp W3-18-1 Site: position = -202 score = 4.41155 sequence = ATCAAAAAAACTAAT Gene: Sputw3181_1837: L-serine dehydratase 1 (EC 4.3.1.17)	* Shewanella sp ANA-3 Site: position = -199 score = 4.41155 sequence = ATCAAAAAAACTAAT Gene: Shewana3_2295: L-serine dehydratase 1 (EC 4.3.1.17)	* Shewanella sp MR-4 Site: position = -199 score = 4.41155 sequence = ATCAAAAAAACTAAT Gene: Shewmr4_1725: L-serine dehydratase 1 (EC 4.3.1.17)	* Shewanella sp MR-7 Site: position = -199 score = 4.41155 sequence = ATCAAAAAAACTAAT Gene: Shewmr7_1804: L-serine dehydratase 1 (EC 4.3.1.17)	* Shewanella baltica OS155 Site: position = -197 score = 4.37433 sequence = ATTTAAAAAACTAAT Gene: Sbal_2417: L-serine dehydratase 1 (EC 4.3.1.17)	* Shewanella denitrificans OS217 Site: position = -208 score = 5.21552 sequence = ATAAGAAAAACTAAT Gene: Sden_1946: L-serine dehydratase 1 (EC 4.3.1.17)	* Shewanella frigidimarina NCIMB 400 Site: position = -140 score = 4.48595 sequence = ATCAAAAAATCTAAT Gene: Sfri_2402: L-serine dehydratase 1 (EC 4.3.1.17)	* Shewanella amazonensis SB2B Site: position = -189 score = 4.58665 sequence = ATAAAAATAACTAAT Gene: Sama_1325: L-serine dehydratase 1 (EC 4.3.1.17)	* Shewanella loihica PV-4 Site: position = -184 score = 4.13562 sequence = TTGAAAAAAACTAAT Gene: Shew_1625: L-serine dehydratase 1 (EC 4.3.1.17)	* Shewanella pealeana ATCC 700345 Site: position = -232 score = 5.71953 sequence = ATTAGATTATCTAAT Gene: Spea_1538: L-serine dehydratase 1 (EC 4.3.1.17)	* Shewanella halifaxensis HAW-EB4 Site: position = -244 score = 5.28062 sequence = ATTAGCTTATCTAAT Gene: Shal_1608: L-serine dehydratase 1 (EC 4.3.1.17)	* Shewanella piezotolerans WP3 Site: position = -246 score = 5.64512 sequence = ATTAGTTTATCTAAT Gene: swp_1748: L-serine dehydratase 1 (EC 4.3.1.17)	* Shewanella sediminis HAW-EB3 Site: position = -187 score = 4.8389 sequence = ATTAAAAAATCTCAT Gene: Ssed_2838: L-serine dehydratase 1 (EC 4.3.1.17)	* Shewanella woodyi ATCC 51908 Site: position = -206 score = 4.65174 sequence = CTTAGCTTATCTAAT Site: position = -179 score = 4.76449 sequence = ATTAAAAAAACTCAT Gene: Swoo_1806: L-serine dehydratase 1 (EC 4.3.1.17)	L-serine dehydratase 1 (EC 4.3.1.17)

CRON 5.
SO3987	* Shewanella oneidensis MR-1 Site: position = -109 score = 5.55768 sequence = ATTAGTATAACTAAT Gene: SO_3987: hypothetical protein	* Shewanella putrefaciens CN-32 Site: position = -109 score = 5.55768 sequence = ATTAGTATAACTAAT Gene: Sputcn32_0679: hypothetical protein	* Shewanella sp W3-18-1 Site: position = -109 score = 5.55768 sequence = ATTAGTATAACTAAT Gene: Sputw3181_3492: hypothetical protein	* Shewanella sp ANA-3 Site: position = -109 score = 5.55768 sequence = ATTAGTATAACTAAT Gene: Shewana3_0651: hypothetical protein	* Shewanella sp MR-4 Site: position = -109 score = 5.55768 sequence = ATTAGTATAACTAAT Gene: Shewmr4_0652: hypothetical protein	* Shewanella sp MR-7 Site: position = -109 score = 5.55768 sequence = ATTAGTATAACTAAT Gene: Shewmr7_3370: hypothetical protein	* Shewanella baltica OS155 Site: position = -109 score = 5.55768 sequence = ATTAGTATAACTAAT Gene: Sbal_0787: hypothetical protein	Shewanella denitrificans OS217 Gene: Sden_2983: hypothetical protein	Shewanella frigidimarina NCIMB 400 Gene: Sfri_0534: hypothetical protein	Shewanella amazonensis SB2B Gene: Sama_0602: hypothetical protein	Shewanella loihica PV-4 Gene: Shew_0778: hypothetical protein	Shewanella pealeana ATCC 700345 Gene: Spea_0734: hypothetical protein	Shewanella halifaxensis HAW-EB4 Gene: Shal_0787: hypothetical protein	Shewanella piezotolerans WP3 Gene: swp_4346: hypothetical protein	Shewanella sediminis HAW-EB3 Gene: Ssed_0816: hypothetical protein	Shewanella woodyi ATCC 51908 Gene: Swoo_3763: hypothetical protein	hypothetical protein

CRON 6.
gcvA	* Shewanella oneidensis MR-1 Site: position = -38 score = 5.63208 sequence = ATTAGAAAAACTAAT Gene: SO_1533: Glycine cleavage system transcriptional activator GcvA	* Shewanella putrefaciens CN-32 Site: position = -38 score = 5.63208 sequence = ATTAGAAAAACTAAT Gene: Sputcn32_1282: Glycine cleavage system transcriptional activator GcvA	* Shewanella sp W3-18-1 Site: position = -38 score = 5.63208 sequence = ATTAGAAAAACTAAT Gene: Sputw3181_2824: Glycine cleavage system transcriptional activator GcvA	* Shewanella sp ANA-3 Site: position = -38 score = 5.63208 sequence = ATTAGAAAAACTAAT Gene: Shewana3_2894: Glycine cleavage system transcriptional activator GcvA	* Shewanella sp MR-4 Site: position = -38 score = 5.63208 sequence = ATTAGAAAAACTAAT Gene: Shewmr4_2724: Glycine cleavage system transcriptional activator GcvA	* Shewanella sp MR-7 Site: position = -38 score = 5.63208 sequence = ATTAGAAAAACTAAT Gene: Shewmr7_2795: Glycine cleavage system transcriptional activator GcvA	* Shewanella baltica OS155 Site: position = -38 score = 5.63208 sequence = ATTAGAAAAACTAAT Gene: Sbal_1364: Glycine cleavage system transcriptional activator GcvA	* Shewanella denitrificans OS217 Site: position = -54 score = 5.21552 sequence = ATTAGAAAAACTTAT Gene: Sden_2565: Glycine cleavage system transcriptional activator GcvA	* Shewanella frigidimarina NCIMB 400 Site: position = -38 score = 5.63208 sequence = ATTAGAAAAACTAAT Gene: Sfri_2783: Glycine cleavage system transcriptional activator GcvA	* Shewanella amazonensis SB2B Site: position = -38 score = 5.63208 sequence = ATTAGAAAAACTAAT Gene: Sama_2429: Glycine cleavage system transcriptional activator GcvA	* Shewanella loihica PV-4 Site: position = -38 score = 5.63208 sequence = ATTAGAAAAACTAAT Gene: Shew_2764: Glycine cleavage system transcriptional activator GcvA	* Shewanella pealeana ATCC 700345 Site: position = -38 score = 5.63208 sequence = ATTAGAAAAACTAAT Gene: Spea_2984: Glycine cleavage system transcriptional activator GcvA	* Shewanella halifaxensis HAW-EB4 Site: position = -38 score = 5.63208 sequence = ATTAGAAAAACTAAT Gene: Shal_3073: Glycine cleavage system transcriptional activator GcvA	* Shewanella piezotolerans WP3 Site: position = -38 score = 5.63208 sequence = ATTAGAAAAACTAAT Gene: swp_3612: Glycine cleavage system transcriptional activator GcvA	* Shewanella sediminis HAW-EB3 Site: position = -38 score = 5.63208 sequence = ATTAGAAAAACTAAT Gene: Ssed_3322: Glycine cleavage system transcriptional activator GcvA	* Shewanella woodyi ATCC 51908 Site: position = -38 score = 5.63208 sequence = ATTAGAAAAACTAAT Gene: Swoo_3471: Glycine cleavage system transcriptional activator GcvA	Glycine cleavage system transcriptional activator GcvA
SO1534	Shewanella oneidensis MR-1 Gene: SO_1534: Predicted hydrolase of the alpha/beta-hydrolase fold	Shewanella putrefaciens CN-32 Gene: Sputcn32_1283: Predicted hydrolase of the alpha/beta-hydrolase fold	Shewanella sp W3-18-1 Gene: Sputw3181_2823: Predicted hydrolase of the alpha/beta-hydrolase fold	Shewanella sp ANA-3 Gene: Shewana3_2893: Predicted hydrolase of the alpha/beta-hydrolase fold	Shewanella sp MR-4 Gene: Shewmr4_2723: Predicted hydrolase of the alpha/beta-hydrolase fold	Shewanella sp MR-7 Gene: Shewmr7_2794: Predicted hydrolase of the alpha/beta-hydrolase fold	Shewanella baltica OS155 Gene: Sbal_1365: Predicted hydrolase of the alpha/beta-hydrolase fold	Shewanella denitrificans OS217 Gene: Sden_2564: Predicted hydrolase of the alpha/beta-hydrolase fold	Shewanella frigidimarina NCIMB 400 Gene: Sfri_2782: Predicted hydrolase of the alpha/beta-hydrolase fold	Shewanella amazonensis SB2B Gene: Sama_2428: Predicted hydrolase of the alpha/beta-hydrolase fold	Shewanella loihica PV-4 Gene: Shew_2763: hypothetical protein	Shewanella pealeana ATCC 700345 Gene: Spea_2983: Predicted hydrolase of the alpha/beta-hydrolase fold	Shewanella halifaxensis HAW-EB4 Gene: Shal_3072: Predicted hydrolase of the alpha/beta-hydrolase fold	Shewanella piezotolerans WP3 Gene: swp_3611: Predicted hydrolase of the alpha/beta-hydrolase fold	Shewanella sediminis HAW-EB3 Gene: Ssed_3321: Predicted hydrolase of the alpha/beta-hydrolase fold	Shewanella woodyi ATCC 51908 Gene: Swoo_3470: Predicted hydrolase of the alpha/beta-hydrolase fold	Predicted hydrolase of the alpha/beta-hydrolase fold

CRON 7.
gcvT	* Shewanella oneidensis MR-1 Site: position = -296 score = 5.46777 sequence = ATGAGAAAATCTAAT Gene: SO_0779: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Shewanella putrefaciens CN-32 Site: position = -152 score = 5.46777 sequence = ATGAGAAAATCTAAT Gene: Sputcn32_3211: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Shewanella sp W3-18-1 Site: position = -152 score = 5.46777 sequence = ATGAGAAAATCTAAT Gene: Sputw3181_0730: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Shewanella sp ANA-3 Site: position = -296 score = 5.46777 sequence = ATGAGAAAATCTAAT Gene: Shewana3_3501: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Shewanella sp MR-4 Site: position = -298 score = 5.46777 sequence = ATGAGAAAATCTAAT Gene: Shewmr4_3331: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Shewanella sp MR-7 Site: position = -297 score = 5.46777 sequence = ATGAGAAAATCTAAT Gene: Shewmr7_0622: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Shewanella baltica OS155 Site: position = -348 score = 5.46777 sequence = ATGAGAAAATCTAAT Gene: Sbal_0617: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Shewanella denitrificans OS217 Site: position = -142 score = 5.55768 sequence = ATTAGTAAAACTAAT Gene: Sden_0833: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Shewanella frigidimarina NCIMB 400 Site: position = -131 score = 5.20621 sequence = ATTAGCTAAACTAAT Gene: Sfri_3151: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Shewanella amazonensis SB2B Site: position = -141 score = 5.21552 sequence = ATAAGAAAAACTAAT Gene: Sama_2721: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Shewanella loihica PV-4 Site: position = -371 score = 4.76449 sequence = ATGAGAAAAAGTAAT Gene: Shew_3064: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Shewanella pealeana ATCC 700345 Site: position = -233 score = 5.39337 sequence = ATGAGAAAAACTAAT Gene: Spea_3303: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Shewanella halifaxensis HAW-EB4 Site: position = -213 score = 5.39337 sequence = ATGAGAAAAACTAAT Gene: Shal_3375: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Shewanella piezotolerans WP3 Site: position = -163 score = 5.39337 sequence = ATGAGAAAAACTAAT Gene: swp_0913: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Shewanella sediminis HAW-EB3 Site: position = -213 score = 4.76449 sequence = ATGAGAAAAAGTAAT Gene: Ssed_3675: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Shewanella woodyi ATCC 51908 Site: position = -229 score = 4.76449 sequence = ATGAGAAAAAGTAAT Gene: Swoo_3969: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
gcvH	Shewanella oneidensis MR-1 Gene: SO_0780: Glycine cleavage system H protein	Shewanella putrefaciens CN-32 Gene: Sputcn32_3210: Glycine cleavage system H protein	Shewanella sp W3-18-1 Gene: Sputw3181_0731: Glycine cleavage system H protein	Shewanella sp ANA-3 Gene: Shewana3_3500: Glycine cleavage system H protein	Shewanella sp MR-4 Gene: Shewmr4_3330: Glycine cleavage system H protein	Shewanella sp MR-7 Gene: Shewmr7_0623: Glycine cleavage system H protein	Shewanella baltica OS155 Gene: Sbal_0618: Glycine cleavage system H protein	Shewanella denitrificans OS217 Gene: Sden_0834: Glycine cleavage system H protein	Shewanella frigidimarina NCIMB 400 Gene: Sfri_3150: Glycine cleavage system H protein	Shewanella amazonensis SB2B Gene: Sama_2720: Glycine cleavage system H protein	Shewanella loihica PV-4 Gene: Shew_3063: Glycine cleavage system H protein	Shewanella pealeana ATCC 700345 Gene: Spea_3302: Glycine cleavage system H protein	Shewanella halifaxensis HAW-EB4 Gene: Shal_3374: Glycine cleavage system H protein	Shewanella piezotolerans WP3 Gene: swp_0914: Glycine cleavage system H protein	Shewanella sediminis HAW-EB3 Gene: Ssed_3674: Glycine cleavage system H protein	Shewanella woodyi ATCC 51908 Gene: Swoo_3968: Glycine cleavage system H protein	Glycine cleavage system H protein
gcvP	Shewanella oneidensis MR-1 Gene: SO_0781: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	Shewanella putrefaciens CN-32 Gene: Sputcn32_3209: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	Shewanella sp W3-18-1 Gene: Sputw3181_0732: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	Shewanella sp ANA-3 Gene: Shewana3_3499: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	Shewanella sp MR-4 Gene: Shewmr4_3329: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	Shewanella sp MR-7 Gene: Shewmr7_0624: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	Shewanella baltica OS155 Gene: Sbal_0619: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	Shewanella denitrificans OS217 Gene: Sden_0835: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	Shewanella frigidimarina NCIMB 400 Gene: Sfri_3149: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	Shewanella amazonensis SB2B Gene: Sama_2719: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	Shewanella loihica PV-4 Gene: Shew_3062: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	Shewanella pealeana ATCC 700345 Gene: Spea_3301: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	Shewanella halifaxensis HAW-EB4 Gene: Shal_3373: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	Shewanella piezotolerans WP3 Gene: swp_0915: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	Shewanella sediminis HAW-EB3 Gene: Ssed_3673: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	Shewanella woodyi ATCC 51908 Gene: Swoo_3967: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)

CRON 8.
sdaC	Shewanella oneidensis MR-1 Gene: SO_0919: Serine transporter	Shewanella putrefaciens CN-32 Gene: Sputcn32_0861: Serine transporter	Shewanella sp W3-18-1 Gene: Sputw3181_3314: Serine transporter	Shewanella sp ANA-3 Gene: Shewana3_3365: Serine transporter	Shewanella sp MR-4 Gene: Shewmr4_0761: Serine transporter	Shewanella sp MR-7 Gene: Shewmr7_3262: Serine transporter	Shewanella baltica OS155 Gene: Sbal_0765: Serine transporter	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400 Gene: Sfri_2127: Serine transporter	Shewanella amazonensis SB2B Gene: Sama_2772: Serine transporter	Shewanella loihica PV-4 Gene: Shew_0739: Serine transporter	* Shewanella pealeana ATCC 700345 Site: position = -400 score = 5.64512 sequence = ATTAGATTAACTAAT Gene: Spea_0771: Serine transporter	* Shewanella halifaxensis HAW-EB4 Site: position = -399 score = 5.28062 sequence = ATTAGATTAGCTAAT Gene: Shal_0823: Serine transporter	* Shewanella piezotolerans WP3 Site: position = -400 score = 5.11954 sequence = ATTAGATTGACTAAT Gene: swp_4263: Serine transporter	Shewanella sediminis HAW-EB3 Gene: Ssed_0858: Serine transporter	Shewanella woodyi ATCC 51908 Gene: Swoo_0863: Serine transporter	Serine transporter
sdaA2	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400 Gene: Sfri_0687: L-serine dehydratase (EC 4.3.1.17)	Shewanella amazonensis SB2B Gene: Sama_2771: L-serine dehydratase (EC 4.3.1.17)	Shewanella loihica PV-4 Gene: Shew_0740: L-serine dehydratase (EC 4.3.1.17)	Shewanella pealeana ATCC 700345 Gene: Spea_0772: L-serine dehydratase (EC 4.3.1.17)	Shewanella halifaxensis HAW-EB4 Gene: Shal_0824: L-serine dehydratase (EC 4.3.1.17)	Shewanella piezotolerans WP3 Gene: swp_4262: L-serine dehydratase (EC 4.3.1.17)	Shewanella sediminis HAW-EB3 Gene: Ssed_0859: L-serine dehydratase (EC 4.3.1.17)	Shewanella woodyi ATCC 51908 Gene: Swoo_0864: L-serine dehydratase (EC 4.3.1.17)	L-serine dehydratase (EC 4.3.1.17)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog GcvA - Shewanellaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --