Regulon of GcvA in Shewanella oneidensis MR-1

Properties
Regulator type:	Transcription factor
TF locus tag:	SO_1533
Regulator family:	LysR
Regulation mode:	activator (repressor)
Biological process:	Glycine metabolism
Effector:	Glycine
Regulog:	GcvA - Shewanellaceae
Statistics of regulated genes:
- Genes	11
- Operons	7
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 108 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By TF family - LysR
By effector - Glycine
By pathway - Glycine metabolism

Regulated operons
	Locus Tag	Name	Function
Position: -109 Score: 5.6 Sequence: ATTAGTATAACTAAT Locus tag: SO_3987 Name: SO3987 Funciton: hypothetical protein
	SO_3987	SO3987	hypothetical protein
Position: -99 Score: 5.1 Sequence: ATTATATATTCTAAT Locus tag: SO_3342 Name: SO3342 Funciton: putative membrane protein
	SO_3342	SO3342	putative membrane protein
Position: -256 Score: 5.2 Sequence: ATTAGCTAAACTAAT Locus tag: SO_2753 Name: SO2753 Funciton: Prolyl endopeptidase (EC 3.4.21.26)
	SO_2753	SO2753	Prolyl endopeptidase (EC 3.4.21.26)
Position: -199 Score: 4.4 Sequence: ATCAAAAAAACTAAT Locus tag: SO_2248 Name: sdaA Funciton: L-serine dehydratase 1 (EC 4.3.1.17)
	SO_2248	sdaA	L-serine dehydratase 1 (EC 4.3.1.17)
Position: -296 Score: 5.5 Sequence: ATGAGAAAATCTAAT Locus tag: SO_0779 Name: gcvT Funciton: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) Locus tag: SO_0780 Name: gcvH Funciton: Glycine cleavage system H protein Locus tag: SO_0781 Name: gcvP Funciton: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
	SO_0779	gcvT	Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
	SO_0780	gcvH	Glycine cleavage system H protein
	SO_0781	gcvP	Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
Position: -38 Score: 5.6 Sequence: ATTAGAAAAACTAAT Locus tag: SO_1533 Name: gcvA Funciton: Glycine cleavage system transcriptional activator GcvA Locus tag: SO_1534 Name: SO1534 Funciton: Predicted hydrolase of the alpha/beta-hydrolase fold
	SO_1533	gcvA	Glycine cleavage system transcriptional activator GcvA
	SO_1534	SO1534	Predicted hydrolase of the alpha/beta-hydrolase fold
Position: -148 Score: 5 Sequence: ATTAGTTTTTATAAT Locus tag: SO_4674 Name: kbl Funciton: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) Locus tag: SO_4673 Name: tdh Funciton: L-threonine 3-dehydrogenase (EC 1.1.1.103)
	SO_4674	kbl	2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)
	SO_4673	tdh	L-threonine 3-dehydrogenase (EC 1.1.1.103)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD