Profile of regulator GcvA in Shewanellaceae
| Regulator family: | LysR |
| Regulation mode: | activator (repressor) |
| Biological process: | Glycine metabolism |
| Effector: | Glycine |
| Regulog: | GcvA - Shewanellaceae |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By TF family - LysR
- By effector - Glycine
- By pathway - Glycine metabolism
Transcription factor binding sites
| Locus Tag | Name | Position | Score | Sequence | |
|---|---|---|---|---|---|
| Shewanella oneidensis MR-1 | |||||
| SO_4674 | kbl | -148 | 5 | ATTAGTTTTTATAAT | |
| SO_3987 | SO3987 | -109 | 5.6 | ATTAGTATAACTAAT | |
| SO_3342 | SO3342 | -99 | 5.1 | ATTATATATTCTAAT | |
| SO_2753 | SO2753 | -256 | 5.2 | ATTAGCTAAACTAAT | |
| SO_2248 | sdaA | -199 | 4.4 | ATCAAAAAAACTAAT | |
| SO_0779 | gcvT | -296 | 5.5 | ATGAGAAAATCTAAT | |
| SO_1533 | gcvA | -38 | 5.6 | ATTAGAAAAACTAAT | |
| Shewanella putrefaciens CN-32 | |||||
| Sputcn32_0679 | SO3987 | -109 | 5.6 | ATTAGTATAACTAAT | |
| Sputcn32_2171 | sdaA | -202 | 4.4 | ATCAAAAAAACTAAT | |
| Sputcn32_3901 | kbl | -148 | 5 | ATTAGTTTTTATAAT | |
| Sputcn32_2677 | SO3342 | -85 | 5 | ATTATTTTTTCTAAT | |
| Sputcn32_1602 | SO2753 | -255 | 5.3 | ATTAGCAAATCTAAT | |
| Sputcn32_3211 | gcvT | -152 | 5.5 | ATGAGAAAATCTAAT | |
| Sputcn32_1282 | gcvA | -38 | 5.6 | ATTAGAAAAACTAAT | |
| Shewanella sp W3-18-1 | |||||
| Sputw3181_3492 | SO3987 | -109 | 5.6 | ATTAGTATAACTAAT | |
| Sputw3181_1837 | sdaA | -202 | 4.4 | ATCAAAAAAACTAAT | |
| Sputw3181_0050 | kbl | -148 | 5 | ATTAGTTTTTATAAT | |
| Sputw3181_1334 | SO3342 | -85 | 5 | ATTATTTTTTCTAAT | |
| Sputw3181_2420 | SO2753 | -255 | 5.3 | ATTAGCAAATCTAAT | |
| Sputw3181_0730 | gcvT | -152 | 5.5 | ATGAGAAAATCTAAT | |
| Sputw3181_2824 | gcvA | -38 | 5.6 | ATTAGAAAAACTAAT | |
| Shewanella sp ANA-3 | |||||
| Shewana3_0651 | SO3987 | -109 | 5.6 | ATTAGTATAACTAAT | |
| Shewana3_4104 | kbl | -148 | 5 | ATTAGTTTTTATAAT | |
| Shewana3_1204 | SO3342 | -99 | 4.8 | ATGAAATATTCTAAT | |
| Shewana3_1204 | SO3342 | -77 | 4.2 | TTTAAATAATCTCAT | |
| Shewana3_2536 | SO2753 | -255 | 5.2 | ATTAGCAAAACTAAT | |
| Shewana3_2295 | sdaA | -199 | 4.4 | ATCAAAAAAACTAAT | |
| Shewana3_3501 | gcvT | -296 | 5.5 | ATGAGAAAATCTAAT | |
| Shewana3_2894 | gcvA | -38 | 5.6 | ATTAGAAAAACTAAT | |
| Shewanella sp MR-4 | |||||
| Shewmr4_0652 | SO3987 | -109 | 5.6 | ATTAGTATAACTAAT | |
| Shewmr4_1725 | sdaA | -199 | 4.4 | ATCAAAAAAACTAAT | |
| Shewmr4_3900 | kbl | -148 | 5 | ATTAGTTTTTATAAT | |
| Shewmr4_1203 | SO3342 | -99 | 5.1 | ATTAAATATTCTAAT | |
| Shewmr4_1203 | SO3342 | -77 | 4.2 | TTTAAATAATCTCAT | |
| Shewmr4_2373 | SO2753 | -255 | 5.2 | ATTAGCAAAACTAAT | |
| Shewmr4_3331 | gcvT | -298 | 5.5 | ATGAGAAAATCTAAT | |
| Shewmr4_2724 | gcvA | -38 | 5.6 | ATTAGAAAAACTAAT | |
| Shewanella sp MR-7 | |||||
| Shewmr7_3370 | SO3987 | -109 | 5.6 | ATTAGTATAACTAAT | |
| Shewmr7_1804 | sdaA | -199 | 4.4 | ATCAAAAAAACTAAT | |
| Shewmr7_3992 | kbl | -148 | 5 | ATTAGTTTTTATAAT | |
| Shewmr7_1274 | SO3342 | -99 | 5.1 | ATTAAATATTCTAAT | |
| Shewmr7_1274 | SO3342 | -77 | 4.2 | TTTAAATAATCTCAT | |
| Shewmr7_2445 | SO2753 | -255 | 5.2 | ATTAGCAAAACTAAT | |
| Shewmr7_0622 | gcvT | -297 | 5.5 | ATGAGAAAATCTAAT | |
| Shewmr7_2795 | gcvA | -38 | 5.6 | ATTAGAAAAACTAAT | |
| Shewanella baltica OS155 | |||||
| Sbal_0787 | SO3987 | -109 | 5.6 | ATTAGTATAACTAAT | |
| Sbal_2417 | sdaA | -197 | 4.4 | ATTTAAAAAACTAAT | |
| Sbal_0058 | kbl | -148 | 5 | ATTAGTTTTTATAAT | |
| Sbal_3015 | SO3342 | -97 | 5 | ATTAATTTTTCTAAT | |
| Sbal_1741 | SO2753 | -254 | 5.6 | ATTAGTAATTCTAAT | |
| Sbal_0617 | gcvT | -348 | 5.5 | ATGAGAAAATCTAAT | |
| Sbal_1364 | gcvA | -38 | 5.6 | ATTAGAAAAACTAAT | |
| Shewanella denitrificans OS217 | |||||
| Sden_1946 | sdaA | -208 | 5.2 | ATAAGAAAAACTAAT | |
| Sden_3615 | kbl | -140 | 5.7 | ATTAGAATTTCTAAT | |
| Sden_0833 | gcvT | -142 | 5.6 | ATTAGTAAAACTAAT | |
| Sden_2565 | gcvA | -54 | 5.2 | ATTAGAAAAACTTAT | |
| Shewanella frigidimarina NCIMB 400 | |||||
| Sfri_2402 | sdaA | -140 | 4.5 | ATCAAAAAATCTAAT | |
| Sfri_3938 | kbl | -191 | 5 | ATTAGTTTTTTTAAT | |
| Sfri_0596 | SO3342 | -171 | 4.3 | ATTATTAAAACTATT | |
| Sfri_0596 | SO3342 | -96 | 5 | ATTAGATTAATTAAT | |
| Sfri_3151 | gcvT | -131 | 5.2 | ATTAGCTAAACTAAT | |
| Sfri_2783 | gcvA | -38 | 5.6 | ATTAGAAAAACTAAT | |
| Shewanella amazonensis SB2B | |||||
| Sama_2429 | gcvA | -38 | 5.6 | ATTAGAAAAACTAAT | |
| Sama_2463 | SO3342 | -113 | 4.6 | ATAATAAAAACTAAT | |
| Sama_2091 | SO2753 | -247 | 5.6 | ATTAGTTTAACTAAT | |
| Sama_1325 | sdaA | -189 | 4.6 | ATAAAAATAACTAAT | |
| Sama_2721 | gcvT | -141 | 5.2 | ATAAGAAAAACTAAT | |
| Sama_0098 | kbl | -150 | 4.6 | ATTAGTTTTTTTTAT | |
| Shewanella loihica PV-4 | |||||
| Shew_2764 | gcvA | -38 | 5.6 | ATTAGAAAAACTAAT | |
| Shew_1154 | SO3342 | -97 | 5.1 | ATTAAAAAATCTAAT | |
| Shew_1522 | SO2753 | -336 | 5.6 | ATTAGtaTtTCTAAT | |
| Shew_1625 | sdaA | -184 | 4.1 | TTGAAAAAAACTAAT | |
| Shew_3064 | gcvT | -371 | 4.8 | ATGAGAAAAAGTAAT | |
| Shewanella pealeana ATCC 700345 | |||||
| Spea_2984 | gcvA | -38 | 5.6 | ATTAGAAAAACTAAT | |
| Spea_1141 | SO3342 | -96 | 5.1 | ATTAGAAAATGTAAT | |
| Spea_2569 | SO2753 | -79 | 5.3 | ATAAGATTATCTAAT | |
| Spea_1538 | sdaA | -232 | 5.7 | ATTAGATTATCTAAT | |
| Spea_0771 | sdaC | -400 | 5.6 | ATTAGATTAACTAAT | |
| Spea_3303 | gcvT | -233 | 5.4 | ATGAGAAAAACTAAT | |
| Spea_0107 | kbl | -147 | 5.6 | ATTAGTTTAACTAAT | |
| Shewanella halifaxensis HAW-EB4 | |||||
| Shal_3073 | gcvA | -38 | 5.6 | ATTAGAAAAACTAAT | |
| Shal_1186 | SO3342 | -96 | 5.1 | ATTAGAAAATATAAT | |
| Shal_1686 | SO2753 | -84 | 5.1 | ATAAGATTATCTCAT | |
| Shal_1608 | sdaA | -244 | 5.3 | ATTAGCTTATCTAAT | |
| Shal_0823 | sdaC | -399 | 5.3 | ATTAGATTAGCTAAT | |
| Shal_3375 | gcvT | -213 | 5.4 | ATGAGAAAAACTAAT | |
| Shal_4215 | kbl | -147 | 5.2 | ATTAGTTTAGCTAAT | |
| Shewanella piezotolerans WP3 | |||||
| swp_3612 | gcvA | -38 | 5.6 | ATTAGAAAAACTAAT | |
| swp_1289 | SO3342 | -95 | 5 | ATTAGTTTTTTTAAT | |
| swp_1825 | SO2753 | -310 | 5.6 | ATTAGtTTtaCTAAT | |
| swp_1748 | sdaA | -246 | 5.6 | ATTAGTTTATCTAAT | |
| swp_4263 | sdaC | -400 | 5.1 | ATTAGATTGACTAAT | |
| swp_0913 | gcvT | -163 | 5.4 | ATGAGAAAAACTAAT | |
| swp_5067 | kbl | -148 | 5.6 | ATTAGTTTAACTAAT | |
| Shewanella sediminis HAW-EB3 | |||||
| Ssed_0101 | kbl | -148 | 4.7 | ATTAGTTTTATTCAT | |
| Ssed_1246 | SO3342 | -97 | 5.1 | ATTAAAATATCTAAT | |
| Ssed_1852 | SO2753 | -278 | 5.2 | ATTAGTTTTTCTTAT | |
| Ssed_2838 | sdaA | -187 | 4.8 | ATTAAAAAATCTCAT | |
| Ssed_3675 | gcvT | -213 | 4.8 | ATGAGAAAAAGTAAT | |
| Ssed_3322 | gcvA | -38 | 5.6 | ATTAGAAAAACTAAT | |
| Shewanella woodyi ATCC 51908 | |||||
| Swoo_3471 | gcvA | -38 | 5.6 | ATTAGAAAAACTAAT | |
| Swoo_1346 | SO3342 | -173 | 4.6 | ATTAGCTAAACTAAA | |
| Swoo_1346 | SO3342 | -98 | 5.6 | ATTAGAAAAACTAAT | |
| Swoo_2736 | SO2753 | -280 | 5.6 | ATTAGTTTATCTAAT | |
| Swoo_1806 | sdaA | -206 | 4.7 | CTTAGCTTATCTAAT | |
| Swoo_1806 | sdaA | -179 | 4.8 | ATTAAAAAAACTCAT | |
| Swoo_3969 | gcvT | -229 | 4.8 | ATGAGAAAAAGTAAT | |
| Swoo_0065 | kbl | -148 | 4.6 | ATTAGTTTTTTTTAT | |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |