Regulon of GcvA in Shewanella frigidimarina NCIMB 400

Properties
Regulator type:	Transcription factor
TF locus tag:	Sfri_2783
Regulator family:	LysR
Regulation mode:	activator (repressor)
Biological process:	Glycine metabolism
Effector:	Glycine
Regulog:	GcvA - Shewanellaceae
Statistics of regulated genes:
- Genes	9
- Operons	5
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 108 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By TF family - LysR
By effector - Glycine
By pathway - Glycine metabolism

Regulated operons
	Locus Tag	Name	Function
Position: -171 Score: 4.3 Sequence: ATTATTAAAACTATT Position: -96 Score: 5 Sequence: ATTAGATTAATTAAT Locus tag: Sfri_0596 Name: SO3342 Funciton: putative membrane protein
	Sfri_0596	SO3342	putative membrane protein
Position: -140 Score: 4.5 Sequence: ATCAAAAAATCTAAT Locus tag: Sfri_2402 Name: sdaA Funciton: L-serine dehydratase 1 (EC 4.3.1.17)
	Sfri_2402	sdaA	L-serine dehydratase 1 (EC 4.3.1.17)
Position: -131 Score: 5.2 Sequence: ATTAGCTAAACTAAT Locus tag: Sfri_3151 Name: gcvT Funciton: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) Locus tag: Sfri_3150 Name: gcvH Funciton: Glycine cleavage system H protein Locus tag: Sfri_3149 Name: gcvP Funciton: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
	Sfri_3151	gcvT	Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
	Sfri_3150	gcvH	Glycine cleavage system H protein
	Sfri_3149	gcvP	Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
Position: -38 Score: 5.6 Sequence: ATTAGAAAAACTAAT Locus tag: Sfri_2783 Name: gcvA Funciton: Glycine cleavage system transcriptional activator GcvA Locus tag: Sfri_2782 Name: SO1534 Funciton: Predicted hydrolase of the alpha/beta-hydrolase fold
	Sfri_2783	gcvA	Glycine cleavage system transcriptional activator GcvA
	Sfri_2782	SO1534	Predicted hydrolase of the alpha/beta-hydrolase fold
Position: -191 Score: 5 Sequence: ATTAGTTTTTTTAAT Locus tag: Sfri_3938 Name: kbl Funciton: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) Locus tag: Sfri_3939 Name: tdh Funciton: L-threonine 3-dehydrogenase (EC 1.1.1.103)
	Sfri_3938	kbl	2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)
	Sfri_3939	tdh	L-threonine 3-dehydrogenase (EC 1.1.1.103)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD