Regulon of GcvA in Shewanella amazonensis SB2B

Properties
Regulator type:	Transcription factor
TF locus tag:	Sama_2429
Regulator family:	LysR
Regulation mode:	activator (repressor)
Biological process:	Glycine metabolism
Effector:	Glycine
Regulog:	GcvA - Shewanellaceae
Statistics of regulated genes:
- Genes	10
- Operons	6
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 108 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By TF family - LysR
By effector - Glycine
By pathway - Glycine metabolism

Regulated operons
	Locus Tag	Name	Function
Position: -38 Score: 5.6 Sequence: ATTAGAAAAACTAAT Locus tag: Sama_2429 Name: gcvA Funciton: Glycine cleavage system transcriptional activator GcvA Locus tag: Sama_2428 Name: SO1534 Funciton: Predicted hydrolase of the alpha/beta-hydrolase fold
	Sama_2429	gcvA	Glycine cleavage system transcriptional activator GcvA
	Sama_2428	SO1534	Predicted hydrolase of the alpha/beta-hydrolase fold
Position: -247 Score: 5.6 Sequence: ATTAGTTTAACTAAT Locus tag: Sama_2091 Name: SO2753 Funciton: Prolyl endopeptidase (EC 3.4.21.26)
	Sama_2091	SO2753	Prolyl endopeptidase (EC 3.4.21.26)
Position: -189 Score: 4.6 Sequence: ATAAAAATAACTAAT Locus tag: Sama_1325 Name: sdaA Funciton: L-serine dehydratase 1 (EC 4.3.1.17)
	Sama_1325	sdaA	L-serine dehydratase 1 (EC 4.3.1.17)
Position: -141 Score: 5.2 Sequence: ATAAGAAAAACTAAT Locus tag: Sama_2721 Name: gcvT Funciton: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) Locus tag: Sama_2720 Name: gcvH Funciton: Glycine cleavage system H protein Locus tag: Sama_2719 Name: gcvP Funciton: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
	Sama_2721	gcvT	Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
	Sama_2720	gcvH	Glycine cleavage system H protein
	Sama_2719	gcvP	Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
Position: -113 Score: 4.6 Sequence: ATAATAAAAACTAAT Locus tag: Sama_2463 Name: SO3342 Funciton: putative membrane protein
	Sama_2463	SO3342	putative membrane protein
Position: -150 Score: 4.6 Sequence: ATTAGTTTTTTTTAT Locus tag: Sama_0098 Name: kbl Funciton: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) Locus tag: Sama_0097 Name: tdh Funciton: L-threonine 3-dehydrogenase (EC 1.1.1.103)
	Sama_0098	kbl	2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)
	Sama_0097	tdh	L-threonine 3-dehydrogenase (EC 1.1.1.103)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD