Regulon of GcvA in Shewanella piezotolerans WP3

Properties
Regulator type:	Transcription factor
TF locus tag:	swp_3612
Regulator family:	LysR
Regulation mode:	activator (repressor)
Biological process:	Glycine metabolism
Effector:	Glycine
Regulog:	GcvA - Shewanellaceae
Statistics of regulated genes:
- Genes	12
- Operons	7
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 108 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By TF family - LysR
By effector - Glycine
By pathway - Glycine metabolism

Regulated operons
	Locus Tag	Name	Function
Position: -38 Score: 5.6 Sequence: ATTAGAAAAACTAAT Locus tag: swp_3612 Name: gcvA Funciton: Glycine cleavage system transcriptional activator GcvA Locus tag: swp_3611 Name: SO1534 Funciton: Predicted hydrolase of the alpha/beta-hydrolase fold
	swp_3612	gcvA	Glycine cleavage system transcriptional activator GcvA
	swp_3611	SO1534	Predicted hydrolase of the alpha/beta-hydrolase fold
Position: -310 Score: 5.6 Sequence: ATTAGtTTtaCTAAT Locus tag: swp_1825 Name: SO2753 Funciton: Prolyl endopeptidase (EC 3.4.21.26)
	swp_1825	SO2753	Prolyl endopeptidase (EC 3.4.21.26)
Position: -246 Score: 5.6 Sequence: ATTAGTTTATCTAAT Locus tag: swp_1748 Name: sdaA Funciton: L-serine dehydratase 1 (EC 4.3.1.17)
	swp_1748	sdaA	L-serine dehydratase 1 (EC 4.3.1.17)
Position: -400 Score: 5.1 Sequence: ATTAGATTGACTAAT Locus tag: swp_4263 Name: sdaC Funciton: Serine transporter Locus tag: swp_4262 Name: sdaA2 Funciton: L-serine dehydratase (EC 4.3.1.17)
	swp_4263	sdaC	Serine transporter
	swp_4262	sdaA2	L-serine dehydratase (EC 4.3.1.17)
Position: -163 Score: 5.4 Sequence: ATGAGAAAAACTAAT Locus tag: swp_0913 Name: gcvT Funciton: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) Locus tag: swp_0914 Name: gcvH Funciton: Glycine cleavage system H protein Locus tag: swp_0915 Name: gcvP Funciton: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
	swp_0913	gcvT	Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
	swp_0914	gcvH	Glycine cleavage system H protein
	swp_0915	gcvP	Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
Position: -148 Score: 5.6 Sequence: ATTAGTTTAACTAAT Locus tag: swp_5067 Name: kbl Funciton: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) Locus tag: swp_5068 Name: tdh Funciton: L-threonine 3-dehydrogenase (EC 1.1.1.103)
	swp_5067	kbl	2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)
	swp_5068	tdh	L-threonine 3-dehydrogenase (EC 1.1.1.103)
Position: -95 Score: 5 Sequence: ATTAGTTTTTTTAAT Locus tag: swp_1289 Name: SO3342 Funciton: putative membrane protein
	swp_1289	SO3342	putative membrane protein

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD