Regulon of GcvA in Shewanella piezotolerans WP3
| Regulator type: | Transcription factor |
| TF locus tag: | swp_3612 |
| Regulator family: | LysR |
| Regulation mode: | activator (repressor) |
| Biological process: | Glycine metabolism |
| Effector: | Glycine |
| Regulog: | GcvA - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 12 |
| - Operons | 7 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By TF family - LysR
- By effector - Glycine
- By pathway - Glycine metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -38
Score: 5.6 Sequence: ATTAGAAAAACTAAT
Locus tag: swp_3612
Name: gcvA Funciton: Glycine cleavage system transcriptional activator GcvA
Locus tag: swp_3611
Name: SO1534 Funciton: Predicted hydrolase of the alpha/beta-hydrolase fold |
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gcvA
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Glycine cleavage system transcriptional activator GcvA
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SO1534
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Predicted hydrolase of the alpha/beta-hydrolase fold
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Position: -310
Score: 5.6 Sequence: ATTAGtTTtaCTAAT
Locus tag: swp_1825
Name: SO2753 Funciton: Prolyl endopeptidase (EC 3.4.21.26) |
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SO2753
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Prolyl endopeptidase (EC 3.4.21.26)
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Position: -246
Score: 5.6 Sequence: ATTAGTTTATCTAAT
Locus tag: swp_1748
Name: sdaA Funciton: L-serine dehydratase 1 (EC 4.3.1.17) |
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sdaA
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L-serine dehydratase 1 (EC 4.3.1.17)
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Position: -400
Score: 5.1 Sequence: ATTAGATTGACTAAT
Locus tag: swp_4263
Name: sdaC Funciton: Serine transporter
Locus tag: swp_4262
Name: sdaA2 Funciton: L-serine dehydratase (EC 4.3.1.17) |
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sdaC
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Serine transporter
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sdaA2
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L-serine dehydratase (EC 4.3.1.17)
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Position: -163
Score: 5.4 Sequence: ATGAGAAAAACTAAT
Locus tag: swp_0913
Name: gcvT Funciton: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
Locus tag: swp_0914
Name: gcvH Funciton: Glycine cleavage system H protein
Locus tag: swp_0915
Name: gcvP Funciton: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
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gcvT
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Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
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gcvH
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Glycine cleavage system H protein
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gcvP
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Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
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Position: -148
Score: 5.6 Sequence: ATTAGTTTAACTAAT
Locus tag: swp_5067
Name: kbl Funciton: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)
Locus tag: swp_5068
Name: tdh Funciton: L-threonine 3-dehydrogenase (EC 1.1.1.103) |
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kbl
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2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)
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tdh
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L-threonine 3-dehydrogenase (EC 1.1.1.103)
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Position: -95
Score: 5 Sequence: ATTAGTTTTTTTAAT
Locus tag: swp_1289
Name: SO3342 Funciton: putative membrane protein |
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SO3342
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putative membrane protein
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |