Regulon of GcvA in Shewanella woodyi ATCC 51908

Properties
Regulator type:	Transcription factor
TF locus tag:	Swoo_3471
Regulator family:	LysR
Regulation mode:	activator (repressor)
Biological process:	Glycine metabolism
Effector:	Glycine
Regulog:	GcvA - Shewanellaceae
Statistics of regulated genes:
- Genes	10
- Operons	6
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 108 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By TF family - LysR
By effector - Glycine
By pathway - Glycine metabolism

Regulated operons
	Locus Tag	Name	Function
Position: -173 Score: 4.6 Sequence: ATTAGCTAAACTAAA Position: -98 Score: 5.6 Sequence: ATTAGAAAAACTAAT Locus tag: Swoo_1346 Name: SO3342 Funciton: putative membrane protein
	Swoo_1346	SO3342	putative membrane protein
Position: -280 Score: 5.6 Sequence: ATTAGTTTATCTAAT Locus tag: Swoo_2736 Name: SO2753 Funciton: Prolyl endopeptidase (EC 3.4.21.26)
	Swoo_2736	SO2753	Prolyl endopeptidase (EC 3.4.21.26)
Position: -206 Score: 4.7 Sequence: CTTAGCTTATCTAAT Position: -179 Score: 4.8 Sequence: ATTAAAAAAACTCAT Locus tag: Swoo_1806 Name: sdaA Funciton: L-serine dehydratase 1 (EC 4.3.1.17)
	Swoo_1806	sdaA	L-serine dehydratase 1 (EC 4.3.1.17)
Position: -229 Score: 4.8 Sequence: ATGAGAAAAAGTAAT Locus tag: Swoo_3969 Name: gcvT Funciton: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) Locus tag: Swoo_3968 Name: gcvH Funciton: Glycine cleavage system H protein Locus tag: Swoo_3967 Name: gcvP Funciton: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
	Swoo_3969	gcvT	Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
	Swoo_3968	gcvH	Glycine cleavage system H protein
	Swoo_3967	gcvP	Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
Position: -38 Score: 5.6 Sequence: ATTAGAAAAACTAAT Locus tag: Swoo_3471 Name: gcvA Funciton: Glycine cleavage system transcriptional activator GcvA Locus tag: Swoo_3470 Name: SO1534 Funciton: Predicted hydrolase of the alpha/beta-hydrolase fold
	Swoo_3471	gcvA	Glycine cleavage system transcriptional activator GcvA
	Swoo_3470	SO1534	Predicted hydrolase of the alpha/beta-hydrolase fold
Position: -148 Score: 4.6 Sequence: ATTAGTTTTTTTTAT Locus tag: Swoo_0065 Name: kbl Funciton: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) Locus tag: Swoo_0064 Name: tdh Funciton: L-threonine 3-dehydrogenase (EC 1.1.1.103)
	Swoo_0065	kbl	2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)
	Swoo_0064	tdh	L-threonine 3-dehydrogenase (EC 1.1.1.103)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD