Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of GcvA in Shewanella woodyi ATCC 51908

Properties
Regulator type: Transcription factor
TF locus tag: Swoo_3471
Regulator family: LysR
Regulation mode: activator (repressor)
Biological process: Glycine metabolism
Effector: Glycine
Regulog: GcvA - Shewanellaceae
Statistics of regulated genes:
- Genes 10
- Operons 6
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 108 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -173
Score: 4.6
Sequence: ATTAGCTAAACTAAA
Position: -98
Score: 5.6
Sequence: ATTAGAAAAACTAAT
Locus tag: Swoo_1346
Name: SO3342
Funciton: putative membrane protein
SO3342
putative membrane protein

Position: -280
Score: 5.6
Sequence: ATTAGTTTATCTAAT
Locus tag: Swoo_2736
Name: SO2753
Funciton: Prolyl endopeptidase (EC 3.4.21.26)
SO2753
Prolyl endopeptidase (EC 3.4.21.26)

Position: -206
Score: 4.7
Sequence: CTTAGCTTATCTAAT
Position: -179
Score: 4.8
Sequence: ATTAAAAAAACTCAT
Locus tag: Swoo_1806
Name: sdaA
Funciton: L-serine dehydratase 1 (EC 4.3.1.17)
sdaA
L-serine dehydratase 1 (EC 4.3.1.17)

Position: -229
Score: 4.8
Sequence: ATGAGAAAAAGTAAT
Locus tag: Swoo_3969
Name: gcvT
Funciton: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
Locus tag: Swoo_3968
Name: gcvH
Funciton: Glycine cleavage system H protein
Locus tag: Swoo_3967
Name: gcvP
Funciton: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
gcvT
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
gcvH
Glycine cleavage system H protein
gcvP
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)

Position: -38
Score: 5.6
Sequence: ATTAGAAAAACTAAT
Locus tag: Swoo_3471
Name: gcvA
Funciton: Glycine cleavage system transcriptional activator GcvA
Locus tag: Swoo_3470
Name: SO1534
Funciton: Predicted hydrolase of the alpha/beta-hydrolase fold
gcvA
Glycine cleavage system transcriptional activator GcvA
SO1534
Predicted hydrolase of the alpha/beta-hydrolase fold

Position: -148
Score: 4.6
Sequence: ATTAGTTTTTTTTAT
Locus tag: Swoo_0065
Name: kbl
Funciton: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)
Locus tag: Swoo_0064
Name: tdh
Funciton: L-threonine 3-dehydrogenase (EC 1.1.1.103)
kbl
2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)
tdh
L-threonine 3-dehydrogenase (EC 1.1.1.103)
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD