Regulon of GcvA in Shewanella sp MR-4

Properties
Regulator type:	Transcription factor
TF locus tag:	Shewmr4_2724
Regulator family:	LysR
Regulation mode:	activator (repressor)
Biological process:	Glycine metabolism
Effector:	Glycine
Regulog:	GcvA - Shewanellaceae
Statistics of regulated genes:
- Genes	11
- Operons	7
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 108 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By TF family - LysR
By effector - Glycine
By pathway - Glycine metabolism

Regulated operons
	Locus Tag	Name	Function
Position: -109 Score: 5.6 Sequence: ATTAGTATAACTAAT Locus tag: Shewmr4_0652 Name: SO3987 Funciton: hypothetical protein
	Shewmr4_0652	SO3987	hypothetical protein
Position: -99 Score: 5.1 Sequence: ATTAAATATTCTAAT Position: -77 Score: 4.2 Sequence: TTTAAATAATCTCAT Locus tag: Shewmr4_1203 Name: SO3342 Funciton: putative membrane protein
	Shewmr4_1203	SO3342	putative membrane protein
Position: -255 Score: 5.2 Sequence: ATTAGCAAAACTAAT Locus tag: Shewmr4_2373 Name: SO2753 Funciton: Prolyl endopeptidase (EC 3.4.21.26)
	Shewmr4_2373	SO2753	Prolyl endopeptidase (EC 3.4.21.26)
Position: -199 Score: 4.4 Sequence: ATCAAAAAAACTAAT Locus tag: Shewmr4_1725 Name: sdaA Funciton: L-serine dehydratase 1 (EC 4.3.1.17)
	Shewmr4_1725	sdaA	L-serine dehydratase 1 (EC 4.3.1.17)
Position: -298 Score: 5.5 Sequence: ATGAGAAAATCTAAT Locus tag: Shewmr4_3331 Name: gcvT Funciton: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) Locus tag: Shewmr4_3330 Name: gcvH Funciton: Glycine cleavage system H protein Locus tag: Shewmr4_3329 Name: gcvP Funciton: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
	Shewmr4_3331	gcvT	Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
	Shewmr4_3330	gcvH	Glycine cleavage system H protein
	Shewmr4_3329	gcvP	Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
Position: -38 Score: 5.6 Sequence: ATTAGAAAAACTAAT Locus tag: Shewmr4_2724 Name: gcvA Funciton: Glycine cleavage system transcriptional activator GcvA Locus tag: Shewmr4_2723 Name: SO1534 Funciton: Predicted hydrolase of the alpha/beta-hydrolase fold
	Shewmr4_2724	gcvA	Glycine cleavage system transcriptional activator GcvA
	Shewmr4_2723	SO1534	Predicted hydrolase of the alpha/beta-hydrolase fold
Position: -148 Score: 5 Sequence: ATTAGTTTTTATAAT Locus tag: Shewmr4_3900 Name: kbl Funciton: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) Locus tag: Shewmr4_3901 Name: tdh Funciton: L-threonine 3-dehydrogenase (EC 1.1.1.103)
	Shewmr4_3900	kbl	2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)
	Shewmr4_3901	tdh	L-threonine 3-dehydrogenase (EC 1.1.1.103)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD