Regulon of GcvA in Shewanella loihica PV-4

Properties
Regulator type:	Transcription factor
TF locus tag:	Shew_2764
Regulator family:	LysR
Regulation mode:	activator (repressor)
Biological process:	Glycine metabolism
Effector:	Glycine
Regulog:	GcvA - Shewanellaceae
Statistics of regulated genes:
- Genes	8
- Operons	5
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 108 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By TF family - LysR
By effector - Glycine
By pathway - Glycine metabolism

Regulated operons
	Locus Tag	Name	Function
Position: -38 Score: 5.6 Sequence: ATTAGAAAAACTAAT Locus tag: Shew_2764 Name: gcvA Funciton: Glycine cleavage system transcriptional activator GcvA Locus tag: Shew_2763 Name: null Funciton: hypothetical protein
	Shew_2764	gcvA	Glycine cleavage system transcriptional activator GcvA
	Shew_2763		hypothetical protein
Position: -336 Score: 5.6 Sequence: ATTAGtaTtTCTAAT Locus tag: Shew_1522 Name: SO2753 Funciton: Prolyl endopeptidase (EC 3.4.21.26)
	Shew_1522	SO2753	Prolyl endopeptidase (EC 3.4.21.26)
Position: -184 Score: 4.1 Sequence: TTGAAAAAAACTAAT Locus tag: Shew_1625 Name: sdaA Funciton: L-serine dehydratase 1 (EC 4.3.1.17)
	Shew_1625	sdaA	L-serine dehydratase 1 (EC 4.3.1.17)
Position: -371 Score: 4.8 Sequence: ATGAGAAAAAGTAAT Locus tag: Shew_3064 Name: gcvT Funciton: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) Locus tag: Shew_3063 Name: gcvH Funciton: Glycine cleavage system H protein Locus tag: Shew_3062 Name: gcvP Funciton: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
	Shew_3064	gcvT	Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
	Shew_3063	gcvH	Glycine cleavage system H protein
	Shew_3062	gcvP	Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
Position: -97 Score: 5.1 Sequence: ATTAAAAAATCTAAT Locus tag: Shew_1154 Name: SO3342 Funciton: putative membrane protein
	Shew_1154	SO3342	putative membrane protein

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD