Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of GcvA in Shewanella halifaxensis HAW-EB4

Properties
Regulator type: Transcription factor
TF locus tag: Shal_3073
Regulator family: LysR
Regulation mode: activator (repressor)
Biological process: Glycine metabolism
Effector: Glycine
Regulog: GcvA - Shewanellaceae
Statistics of regulated genes:
- Genes 12
- Operons 7
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 108 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -84
Score: 5.1
Sequence: ATAAGATTATCTCAT
Locus tag: Shal_1686
Name: SO2753
Funciton: Prolyl endopeptidase (EC 3.4.21.26)
SO2753
Prolyl endopeptidase (EC 3.4.21.26)

Position: -244
Score: 5.3
Sequence: ATTAGCTTATCTAAT
Locus tag: Shal_1608
Name: sdaA
Funciton: L-serine dehydratase 1 (EC 4.3.1.17)
sdaA
L-serine dehydratase 1 (EC 4.3.1.17)

Position: -399
Score: 5.3
Sequence: ATTAGATTAGCTAAT
Locus tag: Shal_0823
Name: sdaC
Funciton: Serine transporter
Locus tag: Shal_0824
Name: sdaA2
Funciton: L-serine dehydratase (EC 4.3.1.17)
sdaC
Serine transporter
sdaA2
L-serine dehydratase (EC 4.3.1.17)

Position: -213
Score: 5.4
Sequence: ATGAGAAAAACTAAT
Locus tag: Shal_3375
Name: gcvT
Funciton: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
Locus tag: Shal_3374
Name: gcvH
Funciton: Glycine cleavage system H protein
Locus tag: Shal_3373
Name: gcvP
Funciton: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
gcvT
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
gcvH
Glycine cleavage system H protein
gcvP
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)

Position: -38
Score: 5.6
Sequence: ATTAGAAAAACTAAT
Locus tag: Shal_3073
Name: gcvA
Funciton: Glycine cleavage system transcriptional activator GcvA
Locus tag: Shal_3072
Name: SO1534
Funciton: Predicted hydrolase of the alpha/beta-hydrolase fold
gcvA
Glycine cleavage system transcriptional activator GcvA
SO1534
Predicted hydrolase of the alpha/beta-hydrolase fold

Position: -147
Score: 5.2
Sequence: ATTAGTTTAGCTAAT
Locus tag: Shal_4215
Name: kbl
Funciton: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)
Locus tag: Shal_4216
Name: tdh
Funciton: L-threonine 3-dehydrogenase (EC 1.1.1.103)
kbl
2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)
tdh
L-threonine 3-dehydrogenase (EC 1.1.1.103)

Position: -96
Score: 5.1
Sequence: ATTAGAAAATATAAT
Locus tag: Shal_1186
Name: SO3342
Funciton: putative membrane protein
SO3342
putative membrane protein
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD