Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Rhizobium sp. NGR234

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF AfrR 1,5-Anhydro-d-Fructose utilization 2 4
TF AglR Alpha-glucoside; Maltose; Trehalose; Sucrose Alpha-glucosides utilization 2 3
TF BioR Biotin biosynthesis 2 1
TF Bll2166 2 2
TF CadR-PbrR Lead ion, (Pb2+); Cadmium, ion (Cd2+) Lead resistance; Cadmium resistance 1 1
TF CueR Copper ion, (Cu+) Copper resistance 6 5
TF EutR Ethanolamine Ethanolamine utilization 2 4
TF EutR Ectoine utilization 7 6
TF FixJ Oxygen Oxidative stress response 2 2
TF FnrN/FixK/AadR Oxygen Oxidative stress response; Nitrogen fixation 20 13
TF GlcC Glycolate Glycolate utilization 5 3
TF HrcA Heat shock Heat shock response 3 3
TF HutC cis-Urocanic acid Histidine utilization 5 3
TF IdnR L-idonate Idonate utilization 6 6
TF Irr Heme Iron homeostasis 18 11
TF LexA DNA damage SOS response 23 17
TF LiuR Branched-chain amino acid degradation 12 14
TF MdcY Malonate metabolism 2 2
TF MerR Mercury ion, (Hg2+) Mercury resistance 1 1
TF Mll0059 2 2
TF Mll1683 Sugar utilization 2 1
TF MntR Manganese ion, (Mn2+) Manganese homeostasis 2 4
TF MocR rhizopine Rhizopine catabolism 2 2
TF ModE Molybdate Molybdenum homeostasis 1 1
TF Mur Iron ion, (Fe2+) Manganese homeostasis 1 1
TF NGR_b22600 Sugar utilization 2 4
TF NadQ NAD biosynthesis 1 1
TF NagQ N-acetylglucosamine N-acetylglucosamine utilization 5 2
TF NifA Nitrogen fixation 16 12
TF NnrR Nitric oxide Denitrification 9 14
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 1 3
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 10 12
TF PaaR Phenylacetyl-CoA Phenylacetic acid degradation 4 3
TF PckR Central carbohydrate metabolism 15 12
TF PhnF Phosphonate utilization 4 2
TF PsiR Psicose Psicose utilization 2 4
TF RL4253 Sugar utilization 2 3
TF RhaR Rhamnose Rhamnose utilization 2 7
TF RhiR Rhamogalacturonate oligosaccharides Rhamnogalacturonides utilization 2 4
TF RirA Iron ion, (Fe2+) Iron homeostasis 18 16
TF RutR Uracil Pyrimidine utilization 10 6
TF SMb20014 Sugar utilization 1 1
TF SMb20039 1 1
TF SMb20537 Sugar utilization 2 2
TF SMb20667 Sugar utilization 2 6
TF SMb20717 Sugar utilization 2 4
TF SMb21598 Sugar utilization 2 2
TF SMb21706 Sugar utilization 2 1
TF SMc04260 Sugar utilization 4 2
TF SahR S-adenosylhomocysteine Methionine metabolism 6 5
TF SoxR Paraquat Superoxide stress response 5 3
TF ThuR Trehalose Trehalose utilization 2 3
TF UxuR2 Galacturonate utilization 3 1
TF XylR Xylose Xylose utilization 4 1
TF XylR Xylose Xylose utilization 2 1
TF YrdX2 2 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 3 2
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 10 4
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 1 1
RNA Glycine Glycine Glycine metabolism 2 2
RNA SAM_alpha S-adenosylmethionine Methionine biosynthesis 2 2
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 3 3
RNA mini-ykkC Multidrug resistance 2 1
RNA serC Serine biosynthesis 1 1
RNA speF Ornithine degradation 1 1
RNA ybhL 1 1
RNA ykkC-yxkD Multidrug resistance 2 1
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