Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Regulon of RutR in Rhizobium sp. NGR234

Properties
Regulator type: Transcription factor
TF locus tag: NGR_c24820
Regulator family: TetR
Regulation mode: repressor
Biological process: Pyrimidine utilization
Effector: Uracil
Regulog: RutR - Rhizobiales
Statistics of regulated genes:
- Genes 16
- Operons 6
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 44 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -62
Score: 5.3
Sequence: CATTGACCAAGTGGTAAAAA
Locus tag: NGR_b02360
Name: pytM
Funciton: Predicted pyrimidine ABC transporter, substrate-binding protein
Locus tag: NGR_b02350
Name: pytN
Funciton: Predicted pyrimidine ABC transporter, ATP-binding protein
Locus tag: NGR_b02340
Name: pytO
Funciton: Predicted pyrimidine ABC transporter, permease protein 1
Locus tag: NGR_b02330
Name: pytQ
Funciton: Predicted pyrimidine ABC transporter, permease protein 2
NGR_b02360
pytM
Predicted pyrimidine ABC transporter, substrate-binding protein
NGR_b02350
pytN
Predicted pyrimidine ABC transporter, ATP-binding protein
NGR_b02340
pytO
Predicted pyrimidine ABC transporter, permease protein 1
NGR_b02330
pytQ
Predicted pyrimidine ABC transporter, permease protein 2
Position: -70
Score: 5.8
Sequence: ATTTTACCGTTTGATAAAAA
Locus tag: NGR_c24760
Name: pydX
Funciton: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism
Locus tag: NGR_c24770
Name: pydA
Funciton: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)
NGR_c24760
pydX
Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism
NGR_c24770
pydA
Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)
Position: -159
Score: 5.2
Sequence: TTTTTACCATCCGAAAAATT
Locus tag: NGR_c35400
Name: pntD
Funciton: Predicted nucleoside ABC transporter, substrate-binding protein
NGR_c35400
pntD
Predicted nucleoside ABC transporter, substrate-binding protein
Position: -78
Score: 5.3
Sequence: CTTATACCAAATGGTAAAAA
Locus tag: NGR_c34500
Name: pntA
Funciton: Predicted nucleoside ABC transporter, ATP-binding protein
Locus tag: NGR_c34510
Name: pntB
Funciton: Predicted nucleoside ABC transporter, permease protein 1
Locus tag: NGR_c34520
Name: pntC
Funciton: Predicted nucleoside ABC transporter, permease protein 2
Locus tag: NGR_c34530
Name: cdd
Funciton: Cytidine deaminase (EC 3.5.4.5)
Locus tag: NGR_c34540
Name: deoD
Funciton: Purine nucleoside phosphorylase (EC 2.4.2.1)
Locus tag: NGR_c34550
Name: deoA
Funciton: Thymidine phosphorylase (EC 2.4.2.4)
NGR_c34500
pntA
Predicted nucleoside ABC transporter, ATP-binding protein
NGR_c34510
pntB
Predicted nucleoside ABC transporter, permease protein 1
NGR_c34520
pntC
Predicted nucleoside ABC transporter, permease protein 2
NGR_c34530
cdd
Cytidine deaminase (EC 3.5.4.5)
NGR_c34540
deoD
Purine nucleoside phosphorylase (EC 2.4.2.1)
NGR_c34550
deoA
Thymidine phosphorylase (EC 2.4.2.4)
Position: -147
Score: 5.5
Sequence: TGTTTACCAACCGGTCAAAT
Locus tag: NGR_c24830
Name: pydC
Funciton: Beta-ureidopropionase (EC 3.5.1.6)
Locus tag: NGR_c24840
Name: pydB
Funciton: Dihydropyrimidinase (EC 3.5.2.2)
NGR_c24830
pydC
Beta-ureidopropionase (EC 3.5.1.6)
NGR_c24840
pydB
Dihydropyrimidinase (EC 3.5.2.2)
Position: -153
Score: 5.7
Sequence: ATTTGACCGGTTGGTAAACA
Locus tag: NGR_c24820
Name: rutR
Funciton: Transcriptional regulator RutR of pyrimidine catabolism, TetR family
NGR_c24820
rutR
Transcriptional regulator RutR of pyrimidine catabolism, TetR family
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