Statistics of regulated genes

Genome	Genes	Operons
Sinorhizobium meliloti 1021	18	6
Rhizobium sp. NGR234	16	6
Rhizobium leguminosarum bv. viciae 3841	20	5
Rhizobium etli CFN 42	20	5
Agrobacterium tumefaciens str. C58 (Cereon)	23	5
Mesorhizobium sp. BNC1	16	4
Mesorhizobium loti MAFF303099	18	6
Brucella melitensis 16M	6	3
Bartonella quintana str. Toulouse
Rhodopseudomonas palustris CGA009
Bradyrhizobium japonicum USDA 110
Bradyrhizobium sp. BTAi1	9	3
Nitrobacter winogradskyi Nb-255
Azorhizobium caulinodans ORS 571
Xanthobacter autotrophicus Py2

Clusters of co-Regulated Orthologous operoNs (CRONs)

Genes																Function
CRON 1.
pydC	* Sinorhizobium meliloti 1021 Site: position = -145 score = 5.51835 sequence = TGTTTACCAACCGGTCAAAT Gene: SMc01820: Beta-ureidopropionase (EC 3.5.1.6)	* Rhizobium sp. NGR234 Site: position = -147 score = 5.51835 sequence = TGTTTACCAACCGGTCAAAT Gene: NGR_c24830: Beta-ureidopropionase (EC 3.5.1.6)	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -159 score = 5.58419 sequence = TGTTTACCAATCGGTCAAAT Gene: RL3716: Beta-ureidopropionase (EC 3.5.1.6)	* Rhizobium etli CFN 42 Site: position = -156 score = 5.58419 sequence = TGTTTACCAATCGGTCAAAT Gene: RHE_CH03290: Beta-ureidopropionase (EC 3.5.1.6)	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -145 score = 5.19787 sequence = TGTTTACCAGCCGGTCAATT Gene: Atu2385: Beta-ureidopropionase (EC 3.5.1.6)	Mesorhizobium sp. BNC1 Gene: Meso_2043: Beta-ureidopropionase (EC 3.5.1.6)	Mesorhizobium loti MAFF303099 Gene: mll1631: Beta-ureidopropionase (EC 3.5.1.6)	* Brucella melitensis 16M Site: position = -148 score = 5.09773 sequence = TTTTGACCAACTAGTCAAGT Gene: BMEI1643: Beta-ureidopropionase (EC 3.5.1.6)	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1 Gene: BBta_6028: Beta-ureidopropionase (EC 3.5.1.6)	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Beta-ureidopropionase (EC 3.5.1.6)
pydB	Sinorhizobium meliloti 1021 Gene: SMc01821: Dihydropyrimidinase (EC 3.5.2.2)	Rhizobium sp. NGR234 Gene: NGR_c24840: Dihydropyrimidinase (EC 3.5.2.2)	Rhizobium leguminosarum bv. viciae 3841 Gene: RL3718: Dihydropyrimidinase (EC 3.5.2.2)	Rhizobium etli CFN 42 Gene: RHE_CH03292: Dihydropyrimidinase (EC 3.5.2.2)	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu2386: Dihydropyrimidinase (EC 3.5.2.2)	Mesorhizobium sp. BNC1 Gene: Meso_2664: Dihydropyrimidinase (EC 3.5.2.2)	Mesorhizobium loti MAFF303099 Gene: mll1629: Dihydropyrimidinase (EC 3.5.2.2)	Brucella melitensis 16M Gene: BMEI1644: Dihydropyrimidinase (EC 3.5.2.2)	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110 Gene: blr7615: Dihydropyrimidinase (EC 3.5.2.2)	Bradyrhizobium sp. BTAi1 Gene: BBta_6029: Dihydropyrimidinase (EC 3.5.2.2)	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Dihydropyrimidinase (EC 3.5.2.2)
Atu2387	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu2387: NTP pyrophosphohydrolase, MutT family	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	NTP pyrophosphohydrolase, MutT family
pytA	Sinorhizobium meliloti 1021 Gene: SMc01823: Pyrimidine ABC transporter ATP-binding protein	Rhizobium sp. NGR234 Gene: NGR_c24860: Pyrimidine ABC transporter ATP-binding protein	Rhizobium leguminosarum bv. viciae 3841 Gene: RL3720: Pyrimidine ABC transporter ATP-binding protein	Rhizobium etli CFN 42 Gene: RHE_CH03294: Pyrimidine ABC transporter ATP-binding protein	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu2388: Pyrimidine ABC transporter ATP-binding protein	Mesorhizobium sp. BNC1 Gene: Meso_2044: Pyrimidine ABC transporter ATP-binding protein	Mesorhizobium loti MAFF303099 Gene: mll1625: Pyrimidine ABC transporter ATP-binding protein	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	* Bradyrhizobium sp. BTAi1 Site: position = -136 score = 5.05638 sequence = ATCTGATCAAATGGTCAAAT Gene: BBta_6033: Pyrimidine ABC transporter ATP-binding protein	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Pyrimidine ABC transporter ATP-binding protein
pytB	Sinorhizobium meliloti 1021 Gene: SMc01825: Pyrimidine ABC transporter, permease protein 1	Rhizobium sp. NGR234 Gene: NGR_c24870: Pyrimidine ABC transporter, permease protein 1	Rhizobium leguminosarum bv. viciae 3841 Gene: RL3721: Pyrimidine ABC transporter, permease protein 1	Rhizobium etli CFN 42 Gene: RHE_CH03295: Pyrimidine ABC transporter, permease protein 1	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu2389: Pyrimidine ABC transporter, permease protein 1	Mesorhizobium sp. BNC1 Gene: Meso_2045: Pyrimidine ABC transporter, permease protein 1	Mesorhizobium loti MAFF303099 Gene: mll1624: Pyrimidine ABC transporter, permease protein 1	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1 Gene: BBta_6032: Pyrimidine ABC transporter, permease protein 1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Pyrimidine ABC transporter, permease protein 1
pytC	Sinorhizobium meliloti 1021 Gene: SMc01826: Pyrimidine ABC transporter, permease protein 2	Rhizobium sp. NGR234 Gene: NGR_c24880: Pyrimidine ABC transporter, permease protein 2	Rhizobium leguminosarum bv. viciae 3841 Gene: RL3722: Pyrimidine ABC transporter, permease protein 2	Rhizobium etli CFN 42 Gene: RHE_CH03296: Pyrimidine ABC transporter, permease protein 2	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu2390: Pyrimidine ABC transporter, permease protein 2	Mesorhizobium sp. BNC1 Gene: Meso_2046: Pyrimidine ABC transporter, permease protein 2	Mesorhizobium loti MAFF303099 Gene: mll1623: Pyrimidine ABC transporter, permease protein 2	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	2 Bradyrhizobium japonicum USDA 110 Gene: bll3315: Pyrimidine ABC transporter, permease protein 2 Gene: bll3314: Pyrimidine ABC transporter, permease protein 2	Bradyrhizobium sp. BTAi1 Gene: BBta_6031: Pyrimidine ABC transporter, permease protein 2	Nitrobacter winogradskyi Nb-255	2 Azorhizobium caulinodans ORS 571 Gene: AZC_2449: Pyrimidine ABC transporter, permease protein 2 Gene: AZC_2448: Pyrimidine ABC transporter, permease protein 2	Xanthobacter autotrophicus Py2	Pyrimidine ABC transporter, permease protein 2
pytD	Sinorhizobium meliloti 1021 Gene: SMc01827: Pyrimidine ABC transporter, substrate-binding protein	Rhizobium sp. NGR234 Gene: NGR_c24890: Pyrimidine ABC transporter, substrate-binding protein	Rhizobium leguminosarum bv. viciae 3841 Gene: RL3723: Pyrimidine ABC transporter, substrate-binding protein	Rhizobium etli CFN 42 Gene: RHE_CH03297: Pyrimidine ABC transporter, substrate-binding protein	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu2391: Pyrimidine ABC transporter, substrate-binding protein	Mesorhizobium sp. BNC1 Gene: Meso_2047: Pyrimidine ABC transporter, substrate-binding protein	Mesorhizobium loti MAFF303099 Gene: mll1621: Pyrimidine ABC transporter, substrate-binding protein	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110 Gene: bll3316: Pyrimidine ABC transporter, substrate-binding protein	Bradyrhizobium sp. BTAi1 Gene: BBta_6030: Pyrimidine ABC transporter, substrate-binding protein	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_2447: Pyrimidine ABC transporter, substrate-binding protein	Xanthobacter autotrophicus Py2	Pyrimidine ABC transporter, substrate-binding protein
praX	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	* Mesorhizobium sp. BNC1 Site: position = -88 score = 4.94419 sequence = GATTGTCCAAACGGTCAAAA Gene: Meso_2042: Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)	* Mesorhizobium loti MAFF303099 Site: position = -96 score = 5.33527 sequence = GTTTGTCCAATCGGTCAAAA Gene: mll1632: Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)
RL3717	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841 Gene: RL3717: Hypothetical protein	Rhizobium etli CFN 42 Gene: RHE_CH03291: Hypothetical protein	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Hypothetical protein
CRON 2.
pytM	* Sinorhizobium meliloti 1021 Site: position = -34 score = 5.47743 sequence = ATTCTACCAATCGGTAAAAA Gene: SMa2361: Predicted pyrimidine ABC transporter, substrate-binding protein	* Rhizobium sp. NGR234 Site: position = -62 score = 5.34277 sequence = CATTGACCAAGTGGTAAAAA Gene: NGR_b02360: Predicted pyrimidine ABC transporter, substrate-binding protein	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -33 score = 5.3326 sequence = TTTGAACCAAATGGTAAAAA Gene: pRL90203: Predicted pyrimidine ABC transporter, substrate-binding protein	* Rhizobium etli CFN 42 Site: position = -32 score = 5.18993 sequence = TTTGAACCAGATGGTAAAAA Gene: RHE_PB00102: Predicted pyrimidine ABC transporter, substrate-binding protein	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	* Mesorhizobium loti MAFF303099 Site: position = -99 score = 5.5084 sequence = ATTTGACCATGTGGACAAAA Gene: mll4178: Predicted pyrimidine ABC transporter, substrate-binding protein	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Predicted pyrimidine ABC transporter, substrate-binding protein
pytH	Sinorhizobium meliloti 1021 Gene: SMa2363: Predicted hydrolase	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL90204: Predicted hydrolase	Rhizobium etli CFN 42 Gene: RHE_PB00103: Predicted hydrolase	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Predicted hydrolase
pytN	Sinorhizobium meliloti 1021 Gene: SMa2365: Predicted pyrimidine ABC transporter, ATP-binding protein	Rhizobium sp. NGR234 Gene: NGR_b02350: Predicted pyrimidine ABC transporter, ATP-binding protein	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL90205: Predicted pyrimidine ABC transporter, ATP-binding protein	Rhizobium etli CFN 42 Gene: RHE_PB00104: Predicted pyrimidine ABC transporter, ATP-binding protein	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099 Gene: mll4176: Predicted pyrimidine ABC transporter, ATP-binding protein	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_3200: Predicted pyrimidine ABC transporter, ATP-binding protein	Xanthobacter autotrophicus Py2	Predicted pyrimidine ABC transporter, ATP-binding protein
pytO	Sinorhizobium meliloti 1021 Gene: SMa2367: Predicted pyrimidine ABC transporter, permease protein 1	Rhizobium sp. NGR234 Gene: NGR_b02340: Predicted pyrimidine ABC transporter, permease protein 1	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL90206: Predicted pyrimidine ABC transporter, permease protein 1	Rhizobium etli CFN 42 Gene: RHE_PB00105: Predicted pyrimidine ABC transporter, permease protein 1	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099 Gene: mll4175: Predicted pyrimidine ABC transporter, permease protein 1	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Predicted pyrimidine ABC transporter, permease protein 1
pytQ	Sinorhizobium meliloti 1021 Gene: SMa2369: Predicted pyrimidine ABC transporter, permease protein 2	Rhizobium sp. NGR234 Gene: NGR_b02330: Predicted pyrimidine ABC transporter, permease protein 2	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL90207: Predicted pyrimidine ABC transporter, permease protein 2	Rhizobium etli CFN 42 Gene: RHE_PB00106: Predicted pyrimidine ABC transporter, permease protein 2	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099 Gene: mll4174: Predicted pyrimidine ABC transporter, permease protein 2	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Predicted pyrimidine ABC transporter, permease protein 2
codA	Sinorhizobium meliloti 1021 Gene: SMa2371: Cytosine deaminase (EC 3.5.4.1)	Rhizobium sp. NGR234 Gene: NGR_b17150: Cytosine deaminase (EC 3.5.4.1)	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL90208: Cytosine deaminase (EC 3.5.4.1)	Rhizobium etli CFN 42 Gene: RHE_PB00107: Cytosine deaminase (EC 3.5.4.1)	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099 Gene: mlr5363: Cytosine deaminase (EC 3.5.4.1)	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110 Gene: bll7276: Cytosine deaminase (EC 3.5.4.1)	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Cytosine deaminase (EC 3.5.4.1)
CRON 3.
rutA	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -101 score = 5.21616 sequence = TTTTATCCATTTGATAAAAT Site: position = -157 score = 5.91029 sequence = TTTTTACCAAATGATAAAAA Gene: Atu2500: Pyrimidine oxygenase	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1 Gene: BBta_1128: Pyrimidine oxygenase	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Pyrimidine oxygenase
rutB	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu2499: Peroxyureidoacrylate / ureidoacrylate amido hydrolase	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_2493: Peroxyureidoacrylate / ureidoacrylate amido hydrolase	Xanthobacter autotrophicus Py2	Peroxyureidoacrylate / ureidoacrylate amido hydrolase
rutC	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu2498: Aminoacrylate peracid reductase	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA3591: Aminoacrylate peracid reductase	Bradyrhizobium japonicum USDA 110 Gene: blr6667: Aminoacrylate peracid reductase	Bradyrhizobium sp. BTAi1 Gene: BBta_6227: Aminoacrylate peracid reductase	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_2494: Aminoacrylate peracid reductase	Xanthobacter autotrophicus Py2	Aminoacrylate peracid reductase
rutD	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu2497: Aminoacrylate hydrolase	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_2496: Aminoacrylate hydrolase	Xanthobacter autotrophicus Py2	Aminoacrylate hydrolase
rutE	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu2496: 3-hydroxy propionic acid dehydrogenase	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009 Gene: RPA4285: 3-hydroxy propionic acid dehydrogenase	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	3-hydroxy propionic acid dehydrogenase
rutF	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu2495: Flavin reductase	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Flavin reductase
CRON 4.
hpt	Sinorhizobium meliloti 1021 Gene: SMc00719: Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8)	Rhizobium sp. NGR234 Gene: NGR_c26990: Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8)	Rhizobium leguminosarum bv. viciae 3841 Gene: RL4328: Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8)	Rhizobium etli CFN 42 Gene: RHE_CH03800: Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8)	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -46 score = 5.0907 sequence = TTTTTACTGAAAGGTAAAAT Gene: Atu3604: Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8)	Mesorhizobium sp. BNC1 Gene: Meso_3093: Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8)	Mesorhizobium loti MAFF303099 Gene: mll3520: Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8)	Brucella melitensis 16M Gene: BMEI0082: Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8)	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571 Gene: AZC_4610: Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8)	Xanthobacter autotrophicus Py2 Gene: Xaut_0023: Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8)	Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8)
CRON 5.
rutR	* Sinorhizobium meliloti 1021 Site: position = -153 score = 5.73512 sequence = ATTTGACCGGTTGGTAAACA Gene: SMc01819: Transcriptional regulator RutR of pyrimidine catabolism, TetR family	* Rhizobium sp. NGR234 Site: position = -153 score = 5.73512 sequence = ATTTGACCGGTTGGTAAACA Gene: NGR_c24820: Transcriptional regulator RutR of pyrimidine catabolism, TetR family	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -162 score = 5.87779 sequence = ATTTGACCGATTGGTAAACA Gene: RL3715: Transcriptional regulator RutR of pyrimidine catabolism, TetR family	* Rhizobium etli CFN 42 Site: position = -163 score = 5.87779 sequence = ATTTGACCGATTGGTAAACA Gene: RHE_CH03289: Transcriptional regulator RutR of pyrimidine catabolism, TetR family	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -153 score = 5.40023 sequence = AATTGACCGGCTGGTAAACA Gene: Atu2384: Transcriptional regulator RutR of pyrimidine catabolism, TetR family	* Mesorhizobium sp. BNC1 Site: position = -130 score = 5.1891 sequence = TTTTGACCGTTTGGACAATC Gene: Meso_2041: Transcriptional regulator RutR of pyrimidine catabolism, TetR family	* Mesorhizobium loti MAFF303099 Site: position = -151 score = 5.48877 sequence = TTTTGACCGATTGGACAAAC Gene: mlr1634: Transcriptional regulator RutR of pyrimidine catabolism, TetR family	*2 Brucella melitensis 16M Site: position = -90 score = 5.31183 sequence = ACTTGACTAGTTGGTCAAAA Gene: BMEI1642: Transcriptional regulator RutR of pyrimidine catabolism, TetR family Gene: BMEI1641: Transcriptional regulator RutR of pyrimidine catabolism, TetR family	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	* Bradyrhizobium sp. BTAi1 Site: position = -81 score = 5.35908 sequence = ATTTGACCATTTGATCAGAT Gene: BBta_6034: Transcriptional regulator RutR of pyrimidine catabolism, TetR family	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Transcriptional regulator RutR of pyrimidine catabolism, TetR family
CRON 6.
pydX	* Sinorhizobium meliloti 1021 Site: position = -71 score = 5.82174 sequence = ATTTTACCGTTTGATAAAAA Gene: SMc01814: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism	* Rhizobium sp. NGR234 Site: position = -70 score = 5.82174 sequence = ATTTTACCGTTTGATAAAAA Gene: NGR_c24760: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -78 score = 5.60247 sequence = ATTTTACCGTTTGATAAATT Gene: RL3707: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism	* Rhizobium etli CFN 42 Site: position = -77 score = 5.60247 sequence = ATTTTACCGTTTGATAAATT Gene: RHE_CH03277: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism	Agrobacterium tumefaciens str. C58 (Cereon)	* Mesorhizobium sp. BNC1 Site: position = -64 score = 5.56095 sequence = ATTTGACTGATTGATAAAAA Gene: Meso_2057: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism	* Mesorhizobium loti MAFF303099 Site: position = -68 score = 5.81602 sequence = AATTGACCAATTGATAAAAA Gene: mll1646: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism	* Brucella melitensis 16M Site: position = -158 score = 5.4513 sequence = AATTGACCGGATGATAAAAA Gene: BMEI1638: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	* Bradyrhizobium sp. BTAi1 Site: position = -82 score = 5.60495 sequence = TTTTGATCAACTGGTCAAAT Gene: BBta_6036: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism
mll1644	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099 Gene: mll1644: Predicted methyltransferase	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Predicted methyltransferase
pydA	Sinorhizobium meliloti 1021 Gene: SMc01815: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)	Rhizobium sp. NGR234 Gene: NGR_c24770: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)	Rhizobium leguminosarum bv. viciae 3841 Gene: RL3708: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)	Rhizobium etli CFN 42 Gene: RHE_CH03278: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1 Gene: Meso_2055: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)	Mesorhizobium loti MAFF303099 Gene: mll1643: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)	Brucella melitensis 16M Gene: BMEI1639: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1 Gene: BBta_6035: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)
Meso_2056	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1 Gene: Meso_2056: Hypothetical protein	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Hypothetical protein
CRON 7.
pntD	* Sinorhizobium meliloti 1021 Site: position = -157 score = 5.38298 sequence = TTTTTACCATCCGAAAAAAT Gene: SMc02884: Predicted nucleoside ABC transporter, substrate-binding protein	* Rhizobium sp. NGR234 Site: position = -159 score = 5.20517 sequence = TTTTTACCATCCGAAAAATT Gene: NGR_c35400: Predicted nucleoside ABC transporter, substrate-binding protein	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -155 score = 5.11548 sequence = TCTTTACCAGCTGAAAAATT Gene: RL0196: Predicted nucleoside ABC transporter, substrate-binding protein	* Rhizobium etli CFN 42 Site: position = -154 score = 4.84007 sequence = TCTTTACCGCCTGAAAAATT Gene: RHE_CH00187: Predicted nucleoside ABC transporter, substrate-binding protein	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -164 score = 4.66015 sequence = GTTTTTCCACCGGGTCAAAA Gene: Atu0126: Predicted nucleoside ABC transporter, substrate-binding protein	Mesorhizobium sp. BNC1 Gene: Meso_3982: Predicted nucleoside ABC transporter, substrate-binding protein	* Mesorhizobium loti MAFF303099 Site: position = -165 score = 4.72736 sequence = GCTTTTCCAAAAGGTCAAAA Gene: mlr3148: Predicted nucleoside ABC transporter, substrate-binding protein	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Predicted nucleoside ABC transporter, substrate-binding protein
pntA	* Sinorhizobium meliloti 1021 Site: position = -80 score = 5.2582 sequence = CTTATACCAAATGGTAAAAA Gene: SMc04127: Predicted nucleoside ABC transporter, ATP-binding protein	* Rhizobium sp. NGR234 Site: position = -78 score = 5.2582 sequence = CTTATACCAAATGGTAAAAA Gene: NGR_c34500: Predicted nucleoside ABC transporter, ATP-binding protein	Rhizobium leguminosarum bv. viciae 3841 Gene: RL0197: Predicted nucleoside ABC transporter, ATP-binding protein	Rhizobium etli CFN 42 Gene: RHE_CH00188: Predicted nucleoside ABC transporter, ATP-binding protein	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu0127: Predicted nucleoside ABC transporter, ATP-binding protein	* Mesorhizobium sp. BNC1 Site: position = -18 score = 5.26567 sequence = TGTTGACCAAAAGATAAAAT Gene: Meso_3652: Predicted nucleoside ABC transporter, ATP-binding protein	* Mesorhizobium loti MAFF303099 Site: position = -41 score = 5.57618 sequence = TTTTGACCAAGCGATAAAAA Gene: mlr3154: Predicted nucleoside ABC transporter, ATP-binding protein	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Predicted nucleoside ABC transporter, ATP-binding protein
pntB	Sinorhizobium meliloti 1021 Gene: SMc04126: Predicted nucleoside ABC transporter, permease protein 1	Rhizobium sp. NGR234 Gene: NGR_c34510: Predicted nucleoside ABC transporter, permease protein 1	Rhizobium leguminosarum bv. viciae 3841 Gene: RL0198: Predicted nucleoside ABC transporter, permease protein 1	Rhizobium etli CFN 42 Gene: RHE_CH00189: Predicted nucleoside ABC transporter, permease protein 1	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu0128: Predicted nucleoside ABC transporter, permease protein 1	Mesorhizobium sp. BNC1 Gene: Meso_3653: Predicted nucleoside ABC transporter, permease protein 1	Mesorhizobium loti MAFF303099 Gene: mlr3155: Predicted nucleoside ABC transporter, permease protein 1	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Predicted nucleoside ABC transporter, permease protein 1
pntC	Sinorhizobium meliloti 1021 Gene: SMc04125: Predicted nucleoside ABC transporter, permease protein 2	Rhizobium sp. NGR234 Gene: NGR_c34520: Predicted nucleoside ABC transporter, permease protein 2	Rhizobium leguminosarum bv. viciae 3841 Gene: RL0199: Predicted nucleoside ABC transporter, permease protein 2	Rhizobium etli CFN 42 Gene: RHE_CH00190: Predicted nucleoside ABC transporter, permease protein 2	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu0129: Predicted nucleoside ABC transporter, permease protein 2	Mesorhizobium sp. BNC1 Gene: Meso_3654: Predicted nucleoside ABC transporter, permease protein 2	Mesorhizobium loti MAFF303099 Gene: mlr3157: Predicted nucleoside ABC transporter, permease protein 2	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Predicted nucleoside ABC transporter, permease protein 2
cdd	Sinorhizobium meliloti 1021 Gene: SMc04124: Cytidine deaminase (EC 3.5.4.5)	Rhizobium sp. NGR234 Gene: NGR_c34530: Cytidine deaminase (EC 3.5.4.5)	Rhizobium leguminosarum bv. viciae 3841 Gene: RL0200: Cytidine deaminase (EC 3.5.4.5)	Rhizobium etli CFN 42 Gene: RHE_CH00191: Cytidine deaminase (EC 3.5.4.5)	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu0130: Cytidine deaminase (EC 3.5.4.5)	Mesorhizobium sp. BNC1 Gene: Meso_3655: Cytidine deaminase (EC 3.5.4.5)	Mesorhizobium loti MAFF303099 Gene: mlr3158: Cytidine deaminase (EC 3.5.4.5)	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Cytidine deaminase (EC 3.5.4.5)
deoD	Sinorhizobium meliloti 1021 Gene: SMc04123: Purine nucleoside phosphorylase (EC 2.4.2.1)	Rhizobium sp. NGR234 Gene: NGR_c34540: Purine nucleoside phosphorylase (EC 2.4.2.1)	Rhizobium leguminosarum bv. viciae 3841 Gene: RL0201: Purine nucleoside phosphorylase (EC 2.4.2.1)	Rhizobium etli CFN 42 Gene: RHE_CH00192: Purine nucleoside phosphorylase (EC 2.4.2.1)	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu0131: Purine nucleoside phosphorylase (EC 2.4.2.1)	Mesorhizobium sp. BNC1 Gene: Meso_3656: Purine nucleoside phosphorylase (EC 2.4.2.1)	Mesorhizobium loti MAFF303099 Gene: mlr3159: Purine nucleoside phosphorylase (EC 2.4.2.1)	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Purine nucleoside phosphorylase (EC 2.4.2.1)
deoC	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841 Gene: RL0202: Deoxyribose-phosphate aldolase (EC 4.1.2.4)	Rhizobium etli CFN 42 Gene: RHE_CH00193: Deoxyribose-phosphate aldolase (EC 4.1.2.4)	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu0132: Deoxyribose-phosphate aldolase (EC 4.1.2.4)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Deoxyribose-phosphate aldolase (EC 4.1.2.4)
deoA	Sinorhizobium meliloti 1021 Gene: SMc04122: Thymidine phosphorylase (EC 2.4.2.4)	Rhizobium sp. NGR234 Gene: NGR_c34550: Thymidine phosphorylase (EC 2.4.2.4)	Rhizobium leguminosarum bv. viciae 3841 Gene: RL0203: Thymidine phosphorylase (EC 2.4.2.4)	Rhizobium etli CFN 42 Gene: RHE_CH00194: Thymidine phosphorylase (EC 2.4.2.4)	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu0133: Thymidine phosphorylase (EC 2.4.2.4)	Mesorhizobium sp. BNC1 Gene: Meso_3657: Thymidine phosphorylase (EC 2.4.2.4)	Mesorhizobium loti MAFF303099 Gene: mlr3160: Thymidine phosphorylase (EC 2.4.2.4)	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Thymidine phosphorylase (EC 2.4.2.4)

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
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