Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of RutR in Rhizobium leguminosarum bv. viciae 3841

Properties
Regulator type: Transcription factor
TF locus tag: RL3715
Regulator family: TetR
Regulation mode: repressor
Biological process: Pyrimidine utilization
Effector: Uracil
Regulog: RutR - Rhizobiales
Statistics of regulated genes:
- Genes 20
- Operons 5
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 44 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -33
Score: 5.3
Sequence: TTTGAACCAAATGGTAAAAA
Locus tag: pRL90203
Name: pytM
Funciton: Predicted pyrimidine ABC transporter, substrate-binding protein
Locus tag: pRL90204
Name: pytH
Funciton: Predicted hydrolase
Locus tag: pRL90205
Name: pytN
Funciton: Predicted pyrimidine ABC transporter, ATP-binding protein
Locus tag: pRL90206
Name: pytO
Funciton: Predicted pyrimidine ABC transporter, permease protein 1
Locus tag: pRL90207
Name: pytQ
Funciton: Predicted pyrimidine ABC transporter, permease protein 2
Locus tag: pRL90208
Name: codA
Funciton: Cytosine deaminase (EC 3.5.4.1)
pRL90203
pytM
Predicted pyrimidine ABC transporter, substrate-binding protein
pRL90204
pytH
Predicted hydrolase
pRL90205
pytN
Predicted pyrimidine ABC transporter, ATP-binding protein
pRL90206
pytO
Predicted pyrimidine ABC transporter, permease protein 1
pRL90207
pytQ
Predicted pyrimidine ABC transporter, permease protein 2
pRL90208
codA
Cytosine deaminase (EC 3.5.4.1)
Position: -78
Score: 5.6
Sequence: ATTTTACCGTTTGATAAATT
Locus tag: RL3707
Name: pydX
Funciton: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism
Locus tag: RL3708
Name: pydA
Funciton: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)
RL3707
pydX
Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism
RL3708
pydA
Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)
Position: -155
Score: 5.1
Sequence: TCTTTACCAGCTGAAAAATT
Locus tag: RL0196
Name: pntD
Funciton: Predicted nucleoside ABC transporter, substrate-binding protein
Locus tag: RL0197
Name: pntA
Funciton: Predicted nucleoside ABC transporter, ATP-binding protein
Locus tag: RL0198
Name: pntB
Funciton: Predicted nucleoside ABC transporter, permease protein 1
Locus tag: RL0199
Name: pntC
Funciton: Predicted nucleoside ABC transporter, permease protein 2
Locus tag: RL0200
Name: cdd
Funciton: Cytidine deaminase (EC 3.5.4.5)
Locus tag: RL0201
Name: deoD
Funciton: Purine nucleoside phosphorylase (EC 2.4.2.1)
Locus tag: RL0202
Name: deoC
Funciton: Deoxyribose-phosphate aldolase (EC 4.1.2.4)
Locus tag: RL0203
Name: deoA
Funciton: Thymidine phosphorylase (EC 2.4.2.4)
RL0196
pntD
Predicted nucleoside ABC transporter, substrate-binding protein
RL0197
pntA
Predicted nucleoside ABC transporter, ATP-binding protein
RL0198
pntB
Predicted nucleoside ABC transporter, permease protein 1
RL0199
pntC
Predicted nucleoside ABC transporter, permease protein 2
RL0200
cdd
Cytidine deaminase (EC 3.5.4.5)
RL0201
deoD
Purine nucleoside phosphorylase (EC 2.4.2.1)
RL0202
deoC
Deoxyribose-phosphate aldolase (EC 4.1.2.4)
RL0203
deoA
Thymidine phosphorylase (EC 2.4.2.4)
Position: -162
Score: 5.9
Sequence: ATTTGACCGATTGGTAAACA
Locus tag: RL3715
Name: rutR
Funciton: Transcriptional regulator RutR of pyrimidine catabolism, TetR family
RL3715
rutR
Transcriptional regulator RutR of pyrimidine catabolism, TetR family
Position: -159
Score: 5.6
Sequence: TGTTTACCAATCGGTCAAAT
Locus tag: RL3716
Name: pydC
Funciton: Beta-ureidopropionase (EC 3.5.1.6)
Locus tag: RL3717
Name: RL3717
Funciton: Hypothetical protein
Locus tag: RL3718
Name: pydB
Funciton: Dihydropyrimidinase (EC 3.5.2.2)
RL3716
pydC
Beta-ureidopropionase (EC 3.5.1.6)
RL3717
RL3717
Hypothetical protein
RL3718
pydB
Dihydropyrimidinase (EC 3.5.2.2)
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