Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of RutR in Mesorhizobium sp. BNC1

Properties
Regulator type: Transcription factor
TF locus tag: Meso_2041
Regulator family: TetR
Regulation mode: repressor
Biological process: Pyrimidine utilization
Effector: Uracil
Regulog: RutR - Rhizobiales
Statistics of regulated genes:
- Genes 16
- Operons 4
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 44 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -64
Score: 5.6
Sequence: ATTTGACTGATTGATAAAAA
Locus tag: Meso_2057
Name: pydX
Funciton: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism
Locus tag: Meso_2056
Name: Meso_2056
Funciton: Hypothetical protein
Locus tag: Meso_2055
Name: pydA
Funciton: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)
pydX
Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism
Meso_2056
Hypothetical protein
pydA
Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)

Position: -130
Score: 5.2
Sequence: TTTTGACCGTTTGGACAATC
Locus tag: Meso_2041
Name: rutR
Funciton: Transcriptional regulator RutR of pyrimidine catabolism, TetR family
rutR
Transcriptional regulator RutR of pyrimidine catabolism, TetR family

Position: -18
Score: 5.3
Sequence: TGTTGACCAAAAGATAAAAT
Locus tag: Meso_3652
Name: pntA
Funciton: Predicted nucleoside ABC transporter, ATP-binding protein
Locus tag: Meso_3653
Name: pntB
Funciton: Predicted nucleoside ABC transporter, permease protein 1
Locus tag: Meso_3654
Name: pntC
Funciton: Predicted nucleoside ABC transporter, permease protein 2
Locus tag: Meso_3655
Name: cdd
Funciton: Cytidine deaminase (EC 3.5.4.5)
Locus tag: Meso_3656
Name: deoD
Funciton: Purine nucleoside phosphorylase (EC 2.4.2.1)
Locus tag: Meso_3657
Name: deoA
Funciton: Thymidine phosphorylase (EC 2.4.2.4)
pntA
Predicted nucleoside ABC transporter, ATP-binding protein
pntB
Predicted nucleoside ABC transporter, permease protein 1
pntC
Predicted nucleoside ABC transporter, permease protein 2
cdd
Cytidine deaminase (EC 3.5.4.5)
deoD
Purine nucleoside phosphorylase (EC 2.4.2.1)
deoA
Thymidine phosphorylase (EC 2.4.2.4)

Position: -88
Score: 4.9
Sequence: GATTGTCCAAACGGTCAAAA
Locus tag: Meso_2042
Name: praX
Funciton: Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)
Locus tag: Meso_2043
Name: pydC
Funciton: Beta-ureidopropionase (EC 3.5.1.6)
Locus tag: Meso_2044
Name: pytA
Funciton: Pyrimidine ABC transporter ATP-binding protein
Locus tag: Meso_2045
Name: pytB
Funciton: Pyrimidine ABC transporter, permease protein 1
Locus tag: Meso_2046
Name: pytC
Funciton: Pyrimidine ABC transporter, permease protein 2
Locus tag: Meso_2047
Name: pytD
Funciton: Pyrimidine ABC transporter, substrate-binding protein
praX
Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)
pydC
Beta-ureidopropionase (EC 3.5.1.6)
pytA
Pyrimidine ABC transporter ATP-binding protein
pytB
Pyrimidine ABC transporter, permease protein 1
pytC
Pyrimidine ABC transporter, permease protein 2
pytD
Pyrimidine ABC transporter, substrate-binding protein
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