Regulon of RutR in Sinorhizobium meliloti 1021
| Regulator type: | Transcription factor |
| TF locus tag: | SMc01819 |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Pyrimidine utilization |
| Effector: | Uracil |
| Regulog: | RutR - Rhizobiales |
| Statistics of regulated genes: | |
| - Genes | 18 |
| - Operons | 6 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - RutR
- By taxonomy - Rhizobiales
- By TF family - TetR
- By effector - Uracil
- By pathway - Pyrimidine utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -34
Score: 5.5 Sequence: ATTCTACCAATCGGTAAAAA
Locus tag: SMa2361
Name: pytM Funciton: Predicted pyrimidine ABC transporter, substrate-binding protein
Locus tag: SMa2363
Name: pytH Funciton: Predicted hydrolase
Locus tag: SMa2365
Name: pytN Funciton: Predicted pyrimidine ABC transporter, ATP-binding protein
Locus tag: SMa2367
Name: pytO Funciton: Predicted pyrimidine ABC transporter, permease protein 1
Locus tag: SMa2369
Name: pytQ Funciton: Predicted pyrimidine ABC transporter, permease protein 2
Locus tag: SMa2371
Name: codA Funciton: Cytosine deaminase (EC 3.5.4.1) |
|||
|
pytM
|
Predicted pyrimidine ABC transporter, substrate-binding protein
|
||
|
pytH
|
Predicted hydrolase
|
||
|
pytN
|
Predicted pyrimidine ABC transporter, ATP-binding protein
|
||
|
pytO
|
Predicted pyrimidine ABC transporter, permease protein 1
|
||
|
pytQ
|
Predicted pyrimidine ABC transporter, permease protein 2
|
||
|
codA
|
Cytosine deaminase (EC 3.5.4.1)
|
||
|
Position: -71
Score: 5.8 Sequence: ATTTTACCGTTTGATAAAAA
Locus tag: SMc01814
Name: pydX Funciton: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism
Locus tag: SMc01815
Name: pydA Funciton: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2) |
|||
|
pydX
|
Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism
|
||
|
pydA
|
Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)
|
||
|
Position: -157
Score: 5.4 Sequence: TTTTTACCATCCGAAAAAAT
Locus tag: SMc02884
Name: pntD Funciton: Predicted nucleoside ABC transporter, substrate-binding protein |
|||
|
pntD
|
Predicted nucleoside ABC transporter, substrate-binding protein
|
||
|
Position: -80
Score: 5.3 Sequence: CTTATACCAAATGGTAAAAA
Locus tag: SMc04127
Name: pntA Funciton: Predicted nucleoside ABC transporter, ATP-binding protein
Locus tag: SMc04126
Name: pntB Funciton: Predicted nucleoside ABC transporter, permease protein 1
Locus tag: SMc04125
Name: pntC Funciton: Predicted nucleoside ABC transporter, permease protein 2
Locus tag: SMc04124
Name: cdd Funciton: Cytidine deaminase (EC 3.5.4.5)
Locus tag: SMc04123
Name: deoD Funciton: Purine nucleoside phosphorylase (EC 2.4.2.1)
Locus tag: SMc04122
Name: deoA Funciton: Thymidine phosphorylase (EC 2.4.2.4) |
|||
|
pntA
|
Predicted nucleoside ABC transporter, ATP-binding protein
|
||
|
pntB
|
Predicted nucleoside ABC transporter, permease protein 1
|
||
|
pntC
|
Predicted nucleoside ABC transporter, permease protein 2
|
||
|
cdd
|
Cytidine deaminase (EC 3.5.4.5)
|
||
|
deoD
|
Purine nucleoside phosphorylase (EC 2.4.2.1)
|
||
|
deoA
|
Thymidine phosphorylase (EC 2.4.2.4)
|
||
|
Position: -153
Score: 5.7 Sequence: ATTTGACCGGTTGGTAAACA
Locus tag: SMc01819
Name: rutR Funciton: Transcriptional regulator RutR of pyrimidine catabolism, TetR family |
|||
|
rutR
|
Transcriptional regulator RutR of pyrimidine catabolism, TetR family
|
||
|
Position: -145
Score: 5.5 Sequence: TGTTTACCAACCGGTCAAAT
Locus tag: SMc01820
Name: pydC Funciton: Beta-ureidopropionase (EC 3.5.1.6)
Locus tag: SMc01821
Name: pydB Funciton: Dihydropyrimidinase (EC 3.5.2.2) |
|||
|
pydC
|
Beta-ureidopropionase (EC 3.5.1.6)
|
||
|
pydB
|
Dihydropyrimidinase (EC 3.5.2.2)
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |