Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of RutR in Sinorhizobium meliloti 1021

Properties
Regulator type: Transcription factor
TF locus tag: SMc01819
Regulator family: TetR
Regulation mode: repressor
Biological process: Pyrimidine utilization
Effector: Uracil
Regulog: RutR - Rhizobiales
Statistics of regulated genes:
- Genes 18
- Operons 6
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 44 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -34
Score: 5.5
Sequence: ATTCTACCAATCGGTAAAAA
Locus tag: SMa2361
Name: pytM
Funciton: Predicted pyrimidine ABC transporter, substrate-binding protein
Locus tag: SMa2363
Name: pytH
Funciton: Predicted hydrolase
Locus tag: SMa2365
Name: pytN
Funciton: Predicted pyrimidine ABC transporter, ATP-binding protein
Locus tag: SMa2367
Name: pytO
Funciton: Predicted pyrimidine ABC transporter, permease protein 1
Locus tag: SMa2369
Name: pytQ
Funciton: Predicted pyrimidine ABC transporter, permease protein 2
Locus tag: SMa2371
Name: codA
Funciton: Cytosine deaminase (EC 3.5.4.1)
SMa2361
pytM
Predicted pyrimidine ABC transporter, substrate-binding protein
SMa2363
pytH
Predicted hydrolase
SMa2365
pytN
Predicted pyrimidine ABC transporter, ATP-binding protein
SMa2367
pytO
Predicted pyrimidine ABC transporter, permease protein 1
SMa2369
pytQ
Predicted pyrimidine ABC transporter, permease protein 2
SMa2371
codA
Cytosine deaminase (EC 3.5.4.1)
Position: -71
Score: 5.8
Sequence: ATTTTACCGTTTGATAAAAA
Locus tag: SMc01814
Name: pydX
Funciton: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism
Locus tag: SMc01815
Name: pydA
Funciton: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)
SMc01814
pydX
Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism
SMc01815
pydA
Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)
Position: -157
Score: 5.4
Sequence: TTTTTACCATCCGAAAAAAT
Locus tag: SMc02884
Name: pntD
Funciton: Predicted nucleoside ABC transporter, substrate-binding protein
SMc02884
pntD
Predicted nucleoside ABC transporter, substrate-binding protein
Position: -80
Score: 5.3
Sequence: CTTATACCAAATGGTAAAAA
Locus tag: SMc04127
Name: pntA
Funciton: Predicted nucleoside ABC transporter, ATP-binding protein
Locus tag: SMc04126
Name: pntB
Funciton: Predicted nucleoside ABC transporter, permease protein 1
Locus tag: SMc04125
Name: pntC
Funciton: Predicted nucleoside ABC transporter, permease protein 2
Locus tag: SMc04124
Name: cdd
Funciton: Cytidine deaminase (EC 3.5.4.5)
Locus tag: SMc04123
Name: deoD
Funciton: Purine nucleoside phosphorylase (EC 2.4.2.1)
Locus tag: SMc04122
Name: deoA
Funciton: Thymidine phosphorylase (EC 2.4.2.4)
SMc04127
pntA
Predicted nucleoside ABC transporter, ATP-binding protein
SMc04126
pntB
Predicted nucleoside ABC transporter, permease protein 1
SMc04125
pntC
Predicted nucleoside ABC transporter, permease protein 2
SMc04124
cdd
Cytidine deaminase (EC 3.5.4.5)
SMc04123
deoD
Purine nucleoside phosphorylase (EC 2.4.2.1)
SMc04122
deoA
Thymidine phosphorylase (EC 2.4.2.4)
Position: -153
Score: 5.7
Sequence: ATTTGACCGGTTGGTAAACA
Locus tag: SMc01819
Name: rutR
Funciton: Transcriptional regulator RutR of pyrimidine catabolism, TetR family
SMc01819
rutR
Transcriptional regulator RutR of pyrimidine catabolism, TetR family
Position: -145
Score: 5.5
Sequence: TGTTTACCAACCGGTCAAAT
Locus tag: SMc01820
Name: pydC
Funciton: Beta-ureidopropionase (EC 3.5.1.6)
Locus tag: SMc01821
Name: pydB
Funciton: Dihydropyrimidinase (EC 3.5.2.2)
SMc01820
pydC
Beta-ureidopropionase (EC 3.5.1.6)
SMc01821
pydB
Dihydropyrimidinase (EC 3.5.2.2)
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