Regulon of RutR in Agrobacterium tumefaciens str. C58 (Cereon)
| Regulator type: | Transcription factor |
| TF locus tag: | Atu2384 |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Pyrimidine utilization |
| Effector: | Uracil |
| Regulog: | RutR - Rhizobiales |
| Statistics of regulated genes: | |
| - Genes | 23 |
| - Operons | 5 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - RutR
- By taxonomy - Rhizobiales
- By TF family - TetR
- By effector - Uracil
- By pathway - Pyrimidine utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -164
Score: 4.7 Sequence: GTTTTTCCACCGGGTCAAAA
Locus tag: Atu0126
Name: pntD Funciton: Predicted nucleoside ABC transporter, substrate-binding protein
Locus tag: Atu0127
Name: pntA Funciton: Predicted nucleoside ABC transporter, ATP-binding protein
Locus tag: Atu0128
Name: pntB Funciton: Predicted nucleoside ABC transporter, permease protein 1
Locus tag: Atu0129
Name: pntC Funciton: Predicted nucleoside ABC transporter, permease protein 2
Locus tag: Atu0130
Name: cdd Funciton: Cytidine deaminase (EC 3.5.4.5)
Locus tag: Atu0131
Name: deoD Funciton: Purine nucleoside phosphorylase (EC 2.4.2.1)
Locus tag: Atu0132
Name: deoC Funciton: Deoxyribose-phosphate aldolase (EC 4.1.2.4)
Locus tag: Atu0133
Name: deoA Funciton: Thymidine phosphorylase (EC 2.4.2.4) |
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pntD
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Predicted nucleoside ABC transporter, substrate-binding protein
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pntA
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Predicted nucleoside ABC transporter, ATP-binding protein
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pntB
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Predicted nucleoside ABC transporter, permease protein 1
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pntC
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Predicted nucleoside ABC transporter, permease protein 2
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cdd
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Cytidine deaminase (EC 3.5.4.5)
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deoD
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Purine nucleoside phosphorylase (EC 2.4.2.1)
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deoC
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Deoxyribose-phosphate aldolase (EC 4.1.2.4)
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deoA
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Thymidine phosphorylase (EC 2.4.2.4)
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Position: -153
Score: 5.4 Sequence: AATTGACCGGCTGGTAAACA
Locus tag: Atu2384
Name: rutR Funciton: Transcriptional regulator RutR of pyrimidine catabolism, TetR family |
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rutR
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Transcriptional regulator RutR of pyrimidine catabolism, TetR family
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Position: -157
Score: 5.9 Sequence: TTTTTACCAAATGATAAAAA
Position: -101
Score: 5.2 Sequence: TTTTATCCATTTGATAAAAT
Locus tag: Atu2500
Name: rutA Funciton: Pyrimidine oxygenase
Locus tag: Atu2499
Name: rutB Funciton: Peroxyureidoacrylate / ureidoacrylate amido hydrolase
Locus tag: Atu2498
Name: rutC Funciton: Aminoacrylate peracid reductase
Locus tag: Atu2497
Name: rutD Funciton: Aminoacrylate hydrolase
Locus tag: Atu2496
Name: rutE Funciton: 3-hydroxy propionic acid dehydrogenase
Locus tag: Atu2495
Name: rutF Funciton: Flavin reductase |
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rutA
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Pyrimidine oxygenase
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rutB
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Peroxyureidoacrylate / ureidoacrylate amido hydrolase
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rutC
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Aminoacrylate peracid reductase
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rutD
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Aminoacrylate hydrolase
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rutE
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3-hydroxy propionic acid dehydrogenase
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rutF
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Flavin reductase
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Position: -46
Score: 5.1 Sequence: TTTTTACTGAAAGGTAAAAT
Locus tag: Atu3604
Name: hpt Funciton: Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) |
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hpt
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Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8)
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Position: -145
Score: 5.2 Sequence: TGTTTACCAGCCGGTCAATT
Locus tag: Atu2385
Name: pydC Funciton: Beta-ureidopropionase (EC 3.5.1.6)
Locus tag: Atu2386
Name: pydB Funciton: Dihydropyrimidinase (EC 3.5.2.2)
Locus tag: Atu2387
Name: Atu2387 Funciton: NTP pyrophosphohydrolase, MutT family
Locus tag: Atu2388
Name: pytA Funciton: Pyrimidine ABC transporter ATP-binding protein
Locus tag: Atu2389
Name: pytB Funciton: Pyrimidine ABC transporter, permease protein 1
Locus tag: Atu2390
Name: pytC Funciton: Pyrimidine ABC transporter, permease protein 2
Locus tag: Atu2391
Name: pytD Funciton: Pyrimidine ABC transporter, substrate-binding protein |
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pydC
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Beta-ureidopropionase (EC 3.5.1.6)
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pydB
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Dihydropyrimidinase (EC 3.5.2.2)
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Atu2387
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NTP pyrophosphohydrolase, MutT family
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pytA
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Pyrimidine ABC transporter ATP-binding protein
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pytB
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Pyrimidine ABC transporter, permease protein 1
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pytC
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Pyrimidine ABC transporter, permease protein 2
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pytD
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Pyrimidine ABC transporter, substrate-binding protein
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |