Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of RutR in Mesorhizobium loti MAFF303099

Properties
Regulator type: Transcription factor
TF locus tag: mlr1634
Regulator family: TetR
Regulation mode: repressor
Biological process: Pyrimidine utilization
Effector: Uracil
Regulog: RutR - Rhizobiales
Statistics of regulated genes:
- Genes 18
- Operons 6
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 44 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -165
Score: 4.7
Sequence: GCTTTTCCAAAAGGTCAAAA
Locus tag: mlr3148
Name: pntD
Funciton: Predicted nucleoside ABC transporter, substrate-binding protein
mlr3148
pntD
Predicted nucleoside ABC transporter, substrate-binding protein
Position: -41
Score: 5.6
Sequence: TTTTGACCAAGCGATAAAAA
Locus tag: mlr3154
Name: pntA
Funciton: Predicted nucleoside ABC transporter, ATP-binding protein
Locus tag: mlr3155
Name: pntB
Funciton: Predicted nucleoside ABC transporter, permease protein 1
Locus tag: mlr3157
Name: pntC
Funciton: Predicted nucleoside ABC transporter, permease protein 2
Locus tag: mlr3158
Name: cdd
Funciton: Cytidine deaminase (EC 3.5.4.5)
Locus tag: mlr3159
Name: deoD
Funciton: Purine nucleoside phosphorylase (EC 2.4.2.1)
Locus tag: mlr3160
Name: deoA
Funciton: Thymidine phosphorylase (EC 2.4.2.4)
mlr3154
pntA
Predicted nucleoside ABC transporter, ATP-binding protein
mlr3155
pntB
Predicted nucleoside ABC transporter, permease protein 1
mlr3157
pntC
Predicted nucleoside ABC transporter, permease protein 2
mlr3158
cdd
Cytidine deaminase (EC 3.5.4.5)
mlr3159
deoD
Purine nucleoside phosphorylase (EC 2.4.2.1)
mlr3160
deoA
Thymidine phosphorylase (EC 2.4.2.4)
Position: -68
Score: 5.8
Sequence: AATTGACCAATTGATAAAAA
Locus tag: mll1646
Name: pydX
Funciton: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism
Locus tag: mll1644
Name: mll1644
Funciton: Predicted methyltransferase
Locus tag: mll1643
Name: pydA
Funciton: Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)
mll1646
pydX
Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism
mll1644
mll1644
Predicted methyltransferase
mll1643
pydA
Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2)
Position: -151
Score: 5.5
Sequence: TTTTGACCGATTGGACAAAC
Locus tag: mlr1634
Name: rutR
Funciton: Transcriptional regulator RutR of pyrimidine catabolism, TetR family
mlr1634
rutR
Transcriptional regulator RutR of pyrimidine catabolism, TetR family
Position: -99
Score: 5.5
Sequence: ATTTGACCATGTGGACAAAA
Locus tag: mll4178
Name: pytM
Funciton: Predicted pyrimidine ABC transporter, substrate-binding protein
Locus tag: mll4176
Name: pytN
Funciton: Predicted pyrimidine ABC transporter, ATP-binding protein
Locus tag: mll4175
Name: pytO
Funciton: Predicted pyrimidine ABC transporter, permease protein 1
Locus tag: mll4174
Name: pytQ
Funciton: Predicted pyrimidine ABC transporter, permease protein 2
mll4178
pytM
Predicted pyrimidine ABC transporter, substrate-binding protein
mll4176
pytN
Predicted pyrimidine ABC transporter, ATP-binding protein
mll4175
pytO
Predicted pyrimidine ABC transporter, permease protein 1
mll4174
pytQ
Predicted pyrimidine ABC transporter, permease protein 2
Position: -96
Score: 5.3
Sequence: GTTTGTCCAATCGGTCAAAA
Locus tag: mll1632
Name: praX
Funciton: Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)
Locus tag: mll1631
Name: pydC
Funciton: Beta-ureidopropionase (EC 3.5.1.6)
Locus tag: mll1629
Name: pydB
Funciton: Dihydropyrimidinase (EC 3.5.2.2)
mll1632
praX
Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18)
mll1631
pydC
Beta-ureidopropionase (EC 3.5.1.6)
mll1629
pydB
Dihydropyrimidinase (EC 3.5.2.2)
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