Regulon of LexA in Rhizobium sp. NGR234
| Regulator type: | Transcription factor |
| TF locus tag: | NGR_c15070 |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Regulog: | LexA - Rhizobiales |
| Statistics of regulated genes: | |
| - Genes | 18 |
| - Operons | 16 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhizobiales
- By trascription factor - LexA
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -36
Score: 1.8 Sequence: GAACATAACATGAAC
Locus tag: NGR_c31880
Name: imuA Funciton: Predicted RecA/RadA recombinase
Locus tag: NGR_c31870
Name: imuB Funciton: DNA polymerase-like protein PA0670
Locus tag: NGR_c31860
Name: dnaE2 Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7) |
|||
|
imuA
|
Predicted RecA/RadA recombinase
|
||
|
imuB
|
DNA polymerase-like protein PA0670
|
||
|
dnaE2
|
DNA polymerase III alpha subunit (EC 2.7.7.7)
|
||
|
Position: 18
Score: 5.5 Sequence: GTTCTTGATTTGTTT
Locus tag: NGR_c15070
Name: lexA Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88) |
|||
|
lexA
|
SOS-response repressor and protease LexA (EC 3.4.21.88)
|
||
|
Position: -141
Score: 5.5 Sequence: GTTCTTTCTTTGTTC
Locus tag: NGR_c15570
Name: uvrA Funciton: Excinuclease ABC subunit A |
|||
|
uvrA
|
Excinuclease ABC subunit A
|
||
|
Position: -81
Score: 5.6 Sequence: GTTCTTGCTTTGTTC
Locus tag: NGR_c04530
Name: PF04055 Funciton: Radical SAM domain protein |
|||
|
PF04055
|
Radical SAM domain protein
|
||
|
Position: -58
Score: 0.3 Sequence: GAATAAAAGAAGAAC
Locus tag: NGR_c20770
Name: uvrD Funciton: ATP-dependent DNA helicase II |
|||
|
uvrD
|
ATP-dependent DNA helicase II
|
||
|
Position: -254
Score: 0.8 Sequence: GAACAAAAAAAGAAC
Locus tag: NGR_c10730
Name: dnaE Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7) |
|||
|
dnaE
|
DNA polymerase III alpha subunit (EC 2.7.7.7)
|
||
|
Position: -142
Score: 2.1 Sequence: GAACAGGAATCGAAC
Position: -74
Score: 1.9 Sequence: GAACAAAACATGTAC
Locus tag: NGR_c16470
Name: recA Funciton: Recombinase A |
|||
|
recA
|
Recombinase A
|
||
|
Position: -90
Score: 4.6 Sequence: GTTCCTTATCCGTTC
Locus tag: NGR_b14150
Name: uvrD2 Funciton: ATP-dependent DNA helicase II |
|||
|
uvrD2
|
ATP-dependent DNA helicase II
|
||
|
Position: -134
Score: 4.6 Sequence: ATTCGCCTTTTGTTC
Locus tag: NGR_c12710
Name: parE Funciton: Topoisomerase IV subunit B (EC 5.99.1.-) |
|||
|
parE
|
Topoisomerase IV subunit B (EC 5.99.1.-)
|
||
|
Position: -61
Score: 4.5 Sequence: GTTTCCCTTTTGTAC
Locus tag: NGR_c17500
Name: uvrB Funciton: Excinuclease ABC subunit B |
|||
|
uvrB
|
Excinuclease ABC subunit B
|
||
|
Position: -30
Score: 5.1 Sequence: GTTCTCGTTATGTTT
Locus tag: NGR_c21340
Name: rna Funciton: Ribonuclease T2 |
|||
|
rna
|
Ribonuclease T2
|
||
|
Position: -143
Score: 5 Sequence: GTTCAACATTTGTTC
Locus tag: NGR_c10750
Name: dinP Funciton: DNA polymerase IV (EC 2.7.7.7) |
|||
|
dinP
|
DNA polymerase IV (EC 2.7.7.7)
|
||
|
Position: -58
Score: 5.4 Sequence: GTTTTTGTTTTGTTC
Locus tag: NGR_c27930
Name: ruvC Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) |
|||
|
ruvC
|
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
|
||
|
Position: -97
Score: 4.8 Sequence: GTTCTATTATTGTTC
Locus tag: NGR_c36840
Name: yifB Funciton: Conserved hypothetical protein |
|||
|
yifB
|
Conserved hypothetical protein
|
||
|
Position: -50
Score: 5.3 Sequence: GTTCTTGTTTTGATC
Locus tag: NGR_c00550
Name: rmuC Funciton: DNA recombination protein RmuC |
|||
|
rmuC
|
DNA recombination protein RmuC
|
||
|
Position: -157
Score: 0.5 Sequence: GAACAAAGAAAGAAC
Locus tag: NGR_c15580
Name: ssb Funciton: Single-stranded DNA-binding protein |
|||
|
ssb
|
Single-stranded DNA-binding protein
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |