Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LexA in Rhizobium sp. NGR234

Properties
Regulator type: Transcription factor
TF locus tag: NGR_c15070
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Regulog: LexA - Rhizobiales
Statistics of regulated genes:
- Genes 18
- Operons 16
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 212 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -36
Score: 1.8
Sequence: GAACATAACATGAAC
Locus tag: NGR_c31880
Name: imuA
Funciton: Predicted RecA/RadA recombinase
Locus tag: NGR_c31870
Name: imuB
Funciton: DNA polymerase-like protein PA0670
Locus tag: NGR_c31860
Name: dnaE2
Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7)
NGR_c31880
imuA
Predicted RecA/RadA recombinase
NGR_c31870
imuB
DNA polymerase-like protein PA0670
NGR_c31860
dnaE2
DNA polymerase III alpha subunit (EC 2.7.7.7)
Position: 18
Score: 5.5
Sequence: GTTCTTGATTTGTTT
Locus tag: NGR_c15070
Name: lexA
Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
NGR_c15070
lexA
SOS-response repressor and protease LexA (EC 3.4.21.88)
Position: -141
Score: 5.5
Sequence: GTTCTTTCTTTGTTC
Locus tag: NGR_c15570
Name: uvrA
Funciton: Excinuclease ABC subunit A
NGR_c15570
uvrA
Excinuclease ABC subunit A
Position: -81
Score: 5.6
Sequence: GTTCTTGCTTTGTTC
Locus tag: NGR_c04530
Name: PF04055
Funciton: Radical SAM domain protein
NGR_c04530
PF04055
Radical SAM domain protein
Position: -58
Score: 0.3
Sequence: GAATAAAAGAAGAAC
Locus tag: NGR_c20770
Name: uvrD
Funciton: ATP-dependent DNA helicase II
NGR_c20770
uvrD
ATP-dependent DNA helicase II
Position: -254
Score: 0.8
Sequence: GAACAAAAAAAGAAC
Locus tag: NGR_c10730
Name: dnaE
Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7)
NGR_c10730
dnaE
DNA polymerase III alpha subunit (EC 2.7.7.7)
Position: -142
Score: 2.1
Sequence: GAACAGGAATCGAAC
Position: -74
Score: 1.9
Sequence: GAACAAAACATGTAC
Locus tag: NGR_c16470
Name: recA
Funciton: Recombinase A
NGR_c16470
recA
Recombinase A
Position: -90
Score: 4.6
Sequence: GTTCCTTATCCGTTC
Locus tag: NGR_b14150
Name: uvrD2
Funciton: ATP-dependent DNA helicase II
NGR_b14150
uvrD2
ATP-dependent DNA helicase II
Position: -134
Score: 4.6
Sequence: ATTCGCCTTTTGTTC
Locus tag: NGR_c12710
Name: parE
Funciton: Topoisomerase IV subunit B (EC 5.99.1.-)
NGR_c12710
parE
Topoisomerase IV subunit B (EC 5.99.1.-)
Position: -61
Score: 4.5
Sequence: GTTTCCCTTTTGTAC
Locus tag: NGR_c17500
Name: uvrB
Funciton: Excinuclease ABC subunit B
NGR_c17500
uvrB
Excinuclease ABC subunit B
Position: -30
Score: 5.1
Sequence: GTTCTCGTTATGTTT
Locus tag: NGR_c21340
Name: rna
Funciton: Ribonuclease T2
NGR_c21340
rna
Ribonuclease T2
Position: -143
Score: 5
Sequence: GTTCAACATTTGTTC
Locus tag: NGR_c10750
Name: dinP
Funciton: DNA polymerase IV (EC 2.7.7.7)
NGR_c10750
dinP
DNA polymerase IV (EC 2.7.7.7)
Position: -58
Score: 5.4
Sequence: GTTTTTGTTTTGTTC
Locus tag: NGR_c27930
Name: ruvC
Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
NGR_c27930
ruvC
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Position: -97
Score: 4.8
Sequence: GTTCTATTATTGTTC
Locus tag: NGR_c36840
Name: yifB
Funciton: Conserved hypothetical protein
NGR_c36840
yifB
Conserved hypothetical protein
Position: -50
Score: 5.3
Sequence: GTTCTTGTTTTGATC
Locus tag: NGR_c00550
Name: rmuC
Funciton: DNA recombination protein RmuC
NGR_c00550
rmuC
DNA recombination protein RmuC
Position: -157
Score: 0.5
Sequence: GAACAAAGAAAGAAC
Locus tag: NGR_c15580
Name: ssb
Funciton: Single-stranded DNA-binding protein
NGR_c15580
ssb
Single-stranded DNA-binding protein
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