Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of PckR in Rhizobium sp. NGR234

Properties
Regulator type: Transcription factor
TF locus tag: NGR_c29180
Regulator family: LacI
Regulation mode: repressor
Biological process: Central carbohydrate metabolism
Effector:
Regulog: PckR - Rhizobiales
Statistics of regulated genes:
- Genes 23
- Operons 10
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 99 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -56
Score: 5.4
Sequence: CTTTTAAATCGATTAGATTA
Locus tag: NGR_c03190
Name: zwf
Funciton: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Locus tag: NGR_c03180
Name: pgl
Funciton: 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
Locus tag: NGR_c03170
Name: edd
Funciton: Phosphogluconate dehydratase (EC 4.2.1.12)
NGR_c03190
zwf
Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
NGR_c03180
pgl
6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type
NGR_c03170
edd
Phosphogluconate dehydratase (EC 4.2.1.12)
Position: -92
Score: 4.7
Sequence: AAATATAATCGATTAGAGTT
Locus tag: NGR_c28360
Name: COG5480
Funciton: Predicted integral membrane protein
Locus tag: NGR_c28350
Name: pykA
Funciton: Pyruvate kinase (EC 2.7.1.40)
NGR_c28360
COG5480
Predicted integral membrane protein
NGR_c28350
pykA
Pyruvate kinase (EC 2.7.1.40)
Position: -222
Score: 4.7
Sequence: AACTCTAATCGATTATATTT
Locus tag: NGR_c28370
Name: COG3931
Funciton: Predicted N-formylglutamate amidohydrolase
Locus tag: NGR_c28380
Name: COG3492
Funciton: hypothetical protein
NGR_c28370
COG3931
Predicted N-formylglutamate amidohydrolase
NGR_c28380
COG3492
hypothetical protein
Position: -30
Score: 5.4
Sequence: AGATTCAATCGTTTTAAAAG
Locus tag: NGR_c29340
Name: eda
Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) / 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16)
NGR_c29340
eda
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) / 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16)
Position: -65
Score: 4.1
Sequence: TGATTTAAACAGTTTAAAGA
Locus tag: NGR_c29180
Name: pckR
Funciton: Transcriptional regulator of phosphoenolpyruvate carboxykinase, LacI family
Locus tag: NGR_c29170
Name: hpr
Funciton: Glyoxylate reductase (EC 1.1.1.79) / Hydroxypyruvate reductase (EC 1.1.1.81)
NGR_c29180
pckR
Transcriptional regulator of phosphoenolpyruvate carboxykinase, LacI family
NGR_c29170
hpr
Glyoxylate reductase (EC 1.1.1.79) / Hydroxypyruvate reductase (EC 1.1.1.81)
Position: -162
Score: 4.6
Sequence: TCGTCTAATCGATTTTATTT
Locus tag: NGR_c31370
Name: sdhC
Funciton: Succinate dehydrogenase cytochrome b-556 subunit
Locus tag: NGR_c31360
Name: sdhD
Funciton: Succinate dehydrogenase hydrophobic membrane anchor protein
Locus tag: NGR_c31350
Name: sdhA
Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: NGR_c31340
Name: sdhB
Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
NGR_c31370
sdhC
Succinate dehydrogenase cytochrome b-556 subunit
NGR_c31360
sdhD
Succinate dehydrogenase hydrophobic membrane anchor protein
NGR_c31350
sdhA
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
NGR_c31340
sdhB
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Position: -73
Score: 5.3
Sequence: CACTCAAATCGATTTAAATG
Locus tag: NGR_c34840
Name: mgsA
Funciton: Methylglyoxal synthase (EC 4.2.3.3)
Locus tag: NGR_c34850
Name: glk
Funciton: Glucokinase (EC 2.7.1.2)
NGR_c34840
mgsA
Methylglyoxal synthase (EC 4.2.3.3)
NGR_c34850
glk
Glucokinase (EC 2.7.1.2)
Position: -138
Score: 4.9
Sequence: TGATCTAACCGATTGAATTT
Locus tag: NGR_c31300
Name: mdh
Funciton: Malate dehydrogenase (EC 1.1.1.37)
Locus tag: NGR_c31290
Name: sucC
Funciton: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Locus tag: NGR_c31280
Name: sucD
Funciton: Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
Locus tag: NGR_c31270
Name: sucA
Funciton: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Locus tag: NGR_c31260
Name: sucB
Funciton: Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
NGR_c31300
mdh
Malate dehydrogenase (EC 1.1.1.37)
NGR_c31290
sucC
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
NGR_c31280
sucD
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
NGR_c31270
sucA
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
NGR_c31260
sucB
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
Position: -157
Score: 5.1
Sequence: CGATTCAACCGATTAAAAAA
Position: -127
Score: 5.3
Sequence: TCTTTAAATCGATTAATATA
Locus tag: NGR_c33940
Name: pckA
Funciton: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49)
NGR_c33940
pckA
Phosphoenolpyruvate carboxykinase (EC 4.1.1.49)
Position: -183
Score: 5.5
Sequence: TATTTCAAACGATTAAATTT
Position: -164
Score: 5.1
Sequence: TTTTTAAATCGTTTTAGTCG
Locus tag: NGR_c28100
Name: fba
Funciton: Fructose-bisphosphate aldolase class I (EC 4.1.2.13)
NGR_c28100
fba
Fructose-bisphosphate aldolase class I (EC 4.1.2.13)
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