Regulon of IdnR in Rhizobium sp. NGR234
| Regulator type: | Transcription factor |
| TF locus tag: | NGR_b22310, NGR_b22380 |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Idonate utilization |
| Effector: | L-idonate |
| Regulog: | IdnR - Rhizobiales |
| Statistics of regulated genes: | |
| - Genes | 15 |
| - Operons | 5 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhizobiales
- By TF family - LacI
- By effector - L-idonate
- By pathway - Idonate utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -21
Score: 6.7 Sequence: TTATGTTATCGATAACATTC
Locus tag: NGR_b22260
Name: COG1063 Funciton: Threonine dehydrogenase and related Zn-dependent dehydrogenases
Locus tag: NGR_b22250
Name: idnD Funciton: L-idonate 5-dehydrogenase (EC 1.1.1.264) |
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COG1063
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Threonine dehydrogenase and related Zn-dependent dehydrogenases
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idnD
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L-idonate 5-dehydrogenase (EC 1.1.1.264)
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Position: -217
Score: 6.5 Sequence: ATTTGTTATCGATAACATCT
Locus tag: NGR_b22370
Name: Atu4687 Funciton: putative ABC transporter, substrate-binding component
Locus tag: NGR_b22360
Name: Atu4688 Funciton: putative ABC transporter, membrane spanning protein
Locus tag: NGR_b22350
Name: Atu4689 Funciton: putative ABC transporter, membrane spanning protein
Locus tag: NGR_b22340
Name: Atu4690 Funciton: putative ABC transporter, ATPase protein |
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Atu4687
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putative ABC transporter, substrate-binding component
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Atu4688
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putative ABC transporter, membrane spanning protein
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Atu4689
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putative ABC transporter, membrane spanning protein
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Atu4690
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putative ABC transporter, ATPase protein
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Position: -88
Score: 4.8 Sequence: GAAGGTTATCGTTAACTTAG
Position: -67
Score: 6.5 Sequence: AGATGTTATCGATAACAAAT
Locus tag: NGR_b22380
Name: idnR Funciton: Predicted transcriptional regulator of L-idonate utilization, LacI family |
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idnR
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Predicted transcriptional regulator of L-idonate utilization, LacI family
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Position: -54
Score: 6.5 Sequence: TCATGTTATCGATAACATAA
Locus tag: NGR_b22410
Name: null Funciton: Sugar ABC transporter, ATP-binding protein
Locus tag: NGR_b22400
Name: null Funciton: Sugar ABC transporter, inner membrane protein
Locus tag: NGR_b22390
Name: null Funciton: Sugar ABC transporter, substrate-binding protein |
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Sugar ABC transporter, ATP-binding protein
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Sugar ABC transporter, inner membrane protein
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Sugar ABC transporter, substrate-binding protein
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Position: -48
Score: 6.7 Sequence: GAATGTTATCGATAACATAA
Locus tag: NGR_b22270
Name: idnO Funciton: Gluconate 5-dehydrogenase (EC 1.1.1.69)
Locus tag: NGR_b22280
Name: idnK Funciton: Gluconokinase (EC 2.7.1.12)
Locus tag: NGR_b22290
Name: gnd Funciton: 6-phosphogluconate dehydrogenase EC=1.1.1.44
Locus tag: NGR_b22300
Name: SSF54909 Funciton: Dimeric alpha-beta barrel
Locus tag: NGR_b22310
Name: idnR Funciton: Predicted transcriptional regulator of L-idonate utilization, LacI family |
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idnO
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Gluconate 5-dehydrogenase (EC 1.1.1.69)
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idnK
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Gluconokinase (EC 2.7.1.12)
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gnd
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6-phosphogluconate dehydrogenase EC=1.1.1.44
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SSF54909
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Dimeric alpha-beta barrel
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idnR
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Predicted transcriptional regulator of L-idonate utilization, LacI family
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |