Regulog IdnR - Rhizobiales
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Idonate utilization |
| Effector: | L-idonate |
| Phylum: | Proteobacteria/Alpha |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhizobiales
- By TF family - LacI
- By effector - L-idonate
- By pathway - Idonate utilization
| Genome | Genes | Operons |
|---|---|---|
| Agrobacterium tumefaciens str. C58 (Cereon) | 10 | 4 |
| Azorhizobium caulinodans ORS 571 | 10 | 2 |
| Bartonella quintana str. Toulouse | ||
| Bradyrhizobium japonicum USDA 110 | ||
| Bradyrhizobium sp. BTAi1 | 2 | 2 |
| Brucella melitensis 16M | ||
| Mesorhizobium loti MAFF303099 | ||
| Mesorhizobium sp. BNC1 | ||
| Nitrobacter winogradskyi Nb-255 | ||
| Rhizobium etli CFN 42 | 10 | 5 |
| Rhizobium leguminosarum bv. viciae 3841 | 10 | 5 |
| Rhizobium sp. NGR234 | 15 | 5 |
| Rhodopseudomonas palustris CGA009 | ||
| Sinorhizobium meliloti 1021 | ||
| Xanthobacter autotrophicus Py2 | 9 | 2 |
| Genes | Function | |||||||||||||||
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| CRON 1. | ||||||||||||||||
| RHE_PC00147 |
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Rhizobium etli CFN 42 Site: position = -57 score = 6.7736 sequence = GAATGTTATCGATAACATAT Gene: RHE_PC00147: Sugar ABC transporter, ATP-binding protein |
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Rhizobium leguminosarum bv. viciae 3841 Site: position = -55 score = 6.7736 sequence = AAATGTTATCGATAACATAC Gene: pRL100394: Sugar ABC transporter, ATP-binding protein |
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Rhizobium sp. NGR234 Site: position = -54 score = 6.51012 sequence = TCATGTTATCGATAACATAA Gene: NGR_b22410: Sugar ABC transporter, ATP-binding protein |
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Sugar ABC transporter, ATP-binding protein |
| RHE_PC00148 |
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Gene: RHE_PC00148: Sugar ABC transporter, inner membrane protein |
Gene: pRL100395: Sugar ABC transporter, inner membrane protein |
Gene: NGR_b22400: Sugar ABC transporter, inner membrane protein |
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Sugar ABC transporter, inner membrane protein |
| RHE_PC00149 |
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Gene: RHE_PC00149: Sugar ABC transporter, substrate-binding protein |
Gene: pRL100396: Sugar ABC transporter, substrate-binding protein |
Gene: NGR_b22390: Sugar ABC transporter, substrate-binding protein |
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Sugar ABC transporter, substrate-binding protein |
| CRON 2. | ||||||||||||||||
| idnO |
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Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -58 score = 6.42733 sequence = GAATGTTATCGGTAACATAT Gene: Atu4086: Gluconate 5-dehydrogenase (EC 1.1.1.69) |
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Azorhizobium caulinodans ORS 571 Site: position = -96 score = 5.96004 sequence = TTTTGTTACCGATAACATGC Gene: AZC_2614: Gluconate 5-dehydrogenase (EC 1.1.1.69) |
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Bradyrhizobium sp. BTAi1 Site: position = -58 score = 5.98917 sequence = TCCTGTTATCGATAACATAG Gene: BBta_0777: Gluconate 5-dehydrogenase (EC 1.1.1.69) |
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Gene: mlr3785: Gluconate 5-dehydrogenase (EC 1.1.1.69) |
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Rhizobium etli CFN 42 Site: position = -105 score = 6.81486 sequence = TTATGTTATCGATAACATAT Gene: RHE_PC00144: Gluconate 5-dehydrogenase (EC 1.1.1.69) |
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Rhizobium leguminosarum bv. viciae 3841 Site: position = -104 score = 6.81486 sequence = TTATGTTATCGATAACATAT Gene: pRL100391: Gluconate 5-dehydrogenase (EC 1.1.1.69) |
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Rhizobium sp. NGR234 Site: position = -48 score = 6.69799 sequence = GAATGTTATCGATAACATAA Gene: NGR_b22270: Gluconate 5-dehydrogenase (EC 1.1.1.69) |
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Gene: SMa0513: Gluconate 5-dehydrogenase (EC 1.1.1.69) |
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Xanthobacter autotrophicus Py2 Site: position = -83 score = 5.65488 sequence = TCATGTTACCGATATCATGA Gene: Xaut_2437: Gluconate 5-dehydrogenase (EC 1.1.1.69) |
Gluconate 5-dehydrogenase (EC 1.1.1.69) |
| Atu4687 |
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Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -83 score = 6.36887 sequence = AAATGTTATCGAGAACATTT Site: position = -245 score = 5.70868 sequence = CAATGATACCGATAACATGC Gene: Atu4687: putative ABC transporter, substrate-binding component |
Gene: AZC_2615: putative ABC transporter, substrate-binding component |
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Rhizobium sp. NGR234 Site: position = -217 score = 6.45754 sequence = ATTTGTTATCGATAACATCT Gene: NGR_b22370: putative ABC transporter, substrate-binding component |
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Gene: Xaut_2438: putative ABC transporter, substrate-binding component |
putative ABC transporter, substrate-binding component |
| Atu4688 |
Gene: Atu4688: putative ABC transporter, membrane spanning protein |
Gene: AZC_2616: putative ABC transporter, membrane spanning protein |
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Gene: NGR_b22360: putative ABC transporter, membrane spanning protein |
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Gene: Xaut_2439: putative ABC transporter, membrane spanning protein |
putative ABC transporter, membrane spanning protein |
| Atu4689 |
Gene: Atu4689: putative ABC transporter, membrane spanning protein |
Gene: AZC_2617: putative ABC transporter, membrane spanning protein |
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Gene: NGR_b22350: putative ABC transporter, membrane spanning protein |
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Gene: Xaut_2440: putative ABC transporter, membrane spanning protein |
putative ABC transporter, membrane spanning protein |
| Atu4690 |
Gene: Atu4690: putative ABC transporter, ATPase protein |
Gene: AZC_2618: putative ABC transporter, ATPase protein |
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Gene: NGR_b22340: putative ABC transporter, ATPase protein |
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Gene: Xaut_2441: putative ABC transporter, ATPase protein |
putative ABC transporter, ATPase protein |
| COG1063 |
Gene: Atu4691: Threonine dehydrogenase and related Zn-dependent dehydrogenases |
Gene: AZC_2619: Threonine dehydrogenase and related Zn-dependent dehydrogenases |
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Rhizobium etli CFN 42 Site: position = -98 score = 6.81486 sequence = ATATGTTATCGATAACATAA Gene: RHE_PC00143: Threonine dehydrogenase and related Zn-dependent dehydrogenases |
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Rhizobium leguminosarum bv. viciae 3841 Site: position = -68 score = 6.81486 sequence = ATATGTTATCGATAACATAA Gene: pRL100390: Threonine dehydrogenase and related Zn-dependent dehydrogenases |
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Rhizobium sp. NGR234 Site: position = -21 score = 6.69799 sequence = TTATGTTATCGATAACATTC Gene: NGR_b22260: Threonine dehydrogenase and related Zn-dependent dehydrogenases |
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Gene: SMa0510: Threonine dehydrogenase and related Zn-dependent dehydrogenases |
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Threonine dehydrogenase and related Zn-dependent dehydrogenases |
| idnK |
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Gene: RHE_PC00145: Gluconokinase (EC 2.7.1.12) |
Gene: pRL100392: Gluconokinase (EC 2.7.1.12) |
Gene: NGR_b22280: Gluconokinase (EC 2.7.1.12) |
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Gene: SMa0514: Gluconokinase (EC 2.7.1.12) |
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Gluconokinase (EC 2.7.1.12) |
| gnd |
Gene: Atu4085: 6-phosphogluconate dehydrogenase EC=1.1.1.44 |
Gene: AZC_2610: 6-phosphogluconate dehydrogenase EC=1.1.1.44 |
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Gene: RHE_PC00146: 6-phosphogluconate dehydrogenase EC=1.1.1.44 |
Gene: pRL100393: 6-phosphogluconate dehydrogenase EC=1.1.1.44 |
Gene: NGR_b22290: 6-phosphogluconate dehydrogenase EC=1.1.1.44 |
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Gene: SMa0516: 6-phosphogluconate dehydrogenase EC=1.1.1.44 |
Gene: Xaut_2433: 6-phosphogluconate dehydrogenase EC=1.1.1.44 |
6-phosphogluconate dehydrogenase EC=1.1.1.44 |
| SSF54909 |
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Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -70 score = 5.70868 sequence = GCATGTTATCGGTATCATTG Site: position = -232 score = 6.36887 sequence = AAATGTTCTCGATAACATTT Gene: Atu4686: Dimeric alpha-beta barrel |
Gene: AZC_2612: Dimeric alpha-beta barrel |
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Gene: NGR_b22300: Dimeric alpha-beta barrel |
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Gene: SMa0518: Dimeric alpha-beta barrel |
Gene: Xaut_2435: Dimeric alpha-beta barrel |
Dimeric alpha-beta barrel |
| idnR |
Gene: Atu4685: Predicted transcriptional regulator of L-idonate utilization, LacI family |
Gene: AZC_2611: Predicted transcriptional regulator of L-idonate utilization, LacI family |
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Bradyrhizobium sp. BTAi1 Site: position = -114 score = 5.65215 sequence = GATTGTTATCGATATCACTG Gene: BBta_0778: Predicted transcriptional regulator of L-idonate utilization, LacI family |
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Rhizobium etli CFN 42 Site: position = -226 score = 6.10209 sequence = ATTTGTTATCGATATCATCC Site: position = -131 score = 4.85223 sequence = CGATGATAGCGATAACTTTA Gene: RHE_PC00141: Predicted transcriptional regulator of L-idonate utilization, LacI family |
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Rhizobium leguminosarum bv. viciae 3841 Site: position = -268 score = 6.13644 sequence = AATTGTTATCGATATCATCT Site: position = -132 score = 4.85223 sequence = CGATGATAGCGATAACTTTA Gene: pRL100388: Predicted transcriptional regulator of L-idonate utilization, LacI family |
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Rhizobium sp. NGR234 Site: position = -67 score = 6.45754 sequence = AGATGTTATCGATAACAAAT Site: position = -88 score = 4.75077 sequence = GAAGGTTATCGTTAACTTAG Gene: NGR_b22380: Predicted transcriptional regulator of L-idonate utilization, LacI family Gene: NGR_b22310: Predicted transcriptional regulator of L-idonate utilization, LacI family |
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Gene: Xaut_2434: Predicted transcriptional regulator of L-idonate utilization, LacI family |
Predicted transcriptional regulator of L-idonate utilization, LacI family |
| idnD |
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Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -177 score = 6.42733 sequence = ATATGTTACCGATAACATTC Gene: Atu4087: L-idonate 5-dehydrogenase (EC 1.1.1.264) |
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Azorhizobium caulinodans ORS 571 Site: position = -62 score = 5.96004 sequence = GCATGTTATCGGTAACAAAA Gene: AZC_2613: L-idonate 5-dehydrogenase (EC 1.1.1.264) |
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Gene: bll6831: L-idonate 5-dehydrogenase (EC 1.1.1.264) |
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Gene: RHE_PC00142: L-idonate 5-dehydrogenase (EC 1.1.1.264) |
Gene: pRL100389: L-idonate 5-dehydrogenase (EC 1.1.1.264) |
Gene: NGR_b22250: L-idonate 5-dehydrogenase (EC 1.1.1.264) |
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Gene: SMa0512: L-idonate 5-dehydrogenase (EC 1.1.1.264) |
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Xanthobacter autotrophicus Py2 Site: position = -81 score = 5.65488 sequence = TCATGATATCGGTAACATGA Gene: Xaut_2436: L-idonate 5-dehydrogenase (EC 1.1.1.264) |
L-idonate 5-dehydrogenase (EC 1.1.1.264) |
| CRON 3. | ||||||||||||||||
| gnl |
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Gene: mll4328: Gluconolactonase (EC 3.1.1.17) |
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Rhizobium etli CFN 42 Site: position = -37 score = 6.10209 sequence = GGATGATATCGATAACAAAT Site: position = -132 score = 4.85223 sequence = TAAAGTTATCGCTATCATCG Gene: RHE_PC00140: Gluconolactonase (EC 3.1.1.17) |
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Rhizobium leguminosarum bv. viciae 3841 Site: position = -177 score = 4.85223 sequence = TAAAGTTATCGCTATCATCG Site: position = -41 score = 6.13644 sequence = AGATGATATCGATAACAATT Gene: pRL100387: Gluconolactonase (EC 3.1.1.17) |
Gene: NGR_b22240: Gluconolactonase (EC 3.1.1.17) |
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Gluconolactonase (EC 3.1.1.17) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |