Regulog IdnR - Rhizobiales

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	Idonate utilization
Effector:	L-idonate
Phylum:	Proteobacteria/Alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 32 sites [see more]

Member of regulog collections

By taxonomy - Rhizobiales
By TF family - LacI
By effector - L-idonate
By pathway - Idonate utilization

Statistics of regulated genes
Genome	Genes	Operons
Agrobacterium tumefaciens str. C58 (Cereon)	10	4
Azorhizobium caulinodans ORS 571	10	2
Bartonella quintana str. Toulouse
Bradyrhizobium japonicum USDA 110
Bradyrhizobium sp. BTAi1	2	2
Brucella melitensis 16M
Mesorhizobium loti MAFF303099
Mesorhizobium sp. BNC1
Nitrobacter winogradskyi Nb-255
Rhizobium etli CFN 42	10	5
Rhizobium leguminosarum bv. viciae 3841	10	5
Rhizobium sp. NGR234	15	5
Rhodopseudomonas palustris CGA009
Sinorhizobium meliloti 1021
Xanthobacter autotrophicus Py2	9	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
RHE_PC00147	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	* Rhizobium etli CFN 42 Site: position = -57 score = 6.7736 sequence = GAATGTTATCGATAACATAT Gene: RHE_PC00147: Sugar ABC transporter, ATP-binding protein	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -55 score = 6.7736 sequence = AAATGTTATCGATAACATAC Gene: pRL100394: Sugar ABC transporter, ATP-binding protein	* Rhizobium sp. NGR234 Site: position = -54 score = 6.51012 sequence = TCATGTTATCGATAACATAA Gene: NGR_b22410: Sugar ABC transporter, ATP-binding protein	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Sugar ABC transporter, ATP-binding protein
RHE_PC00148	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_PC00148: Sugar ABC transporter, inner membrane protein	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL100395: Sugar ABC transporter, inner membrane protein	Rhizobium sp. NGR234 Gene: NGR_b22400: Sugar ABC transporter, inner membrane protein	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Sugar ABC transporter, inner membrane protein
RHE_PC00149	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_PC00149: Sugar ABC transporter, substrate-binding protein	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL100396: Sugar ABC transporter, substrate-binding protein	Rhizobium sp. NGR234 Gene: NGR_b22390: Sugar ABC transporter, substrate-binding protein	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Sugar ABC transporter, substrate-binding protein

CRON 2.
idnO	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -58 score = 6.42733 sequence = GAATGTTATCGGTAACATAT Gene: Atu4086: Gluconate 5-dehydrogenase (EC 1.1.1.69)	* Azorhizobium caulinodans ORS 571 Site: position = -96 score = 5.96004 sequence = TTTTGTTACCGATAACATGC Gene: AZC_2614: Gluconate 5-dehydrogenase (EC 1.1.1.69)	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	* Bradyrhizobium sp. BTAi1 Site: position = -58 score = 5.98917 sequence = TCCTGTTATCGATAACATAG Gene: BBta_0777: Gluconate 5-dehydrogenase (EC 1.1.1.69)	Brucella melitensis 16M	Mesorhizobium loti MAFF303099 Gene: mlr3785: Gluconate 5-dehydrogenase (EC 1.1.1.69)	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	* Rhizobium etli CFN 42 Site: position = -105 score = 6.81486 sequence = TTATGTTATCGATAACATAT Gene: RHE_PC00144: Gluconate 5-dehydrogenase (EC 1.1.1.69)	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -104 score = 6.81486 sequence = TTATGTTATCGATAACATAT Gene: pRL100391: Gluconate 5-dehydrogenase (EC 1.1.1.69)	* Rhizobium sp. NGR234 Site: position = -48 score = 6.69799 sequence = GAATGTTATCGATAACATAA Gene: NGR_b22270: Gluconate 5-dehydrogenase (EC 1.1.1.69)	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMa0513: Gluconate 5-dehydrogenase (EC 1.1.1.69)	* Xanthobacter autotrophicus Py2 Site: position = -83 score = 5.65488 sequence = TCATGTTACCGATATCATGA Gene: Xaut_2437: Gluconate 5-dehydrogenase (EC 1.1.1.69)	Gluconate 5-dehydrogenase (EC 1.1.1.69)
Atu4687	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -83 score = 6.36887 sequence = AAATGTTATCGAGAACATTT Site: position = -245 score = 5.70868 sequence = CAATGATACCGATAACATGC Gene: Atu4687: putative ABC transporter, substrate-binding component	Azorhizobium caulinodans ORS 571 Gene: AZC_2615: putative ABC transporter, substrate-binding component	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	* Rhizobium sp. NGR234 Site: position = -217 score = 6.45754 sequence = ATTTGTTATCGATAACATCT Gene: NGR_b22370: putative ABC transporter, substrate-binding component	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2 Gene: Xaut_2438: putative ABC transporter, substrate-binding component	putative ABC transporter, substrate-binding component
Atu4688	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu4688: putative ABC transporter, membrane spanning protein	Azorhizobium caulinodans ORS 571 Gene: AZC_2616: putative ABC transporter, membrane spanning protein	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234 Gene: NGR_b22360: putative ABC transporter, membrane spanning protein	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2 Gene: Xaut_2439: putative ABC transporter, membrane spanning protein	putative ABC transporter, membrane spanning protein
Atu4689	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu4689: putative ABC transporter, membrane spanning protein	Azorhizobium caulinodans ORS 571 Gene: AZC_2617: putative ABC transporter, membrane spanning protein	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234 Gene: NGR_b22350: putative ABC transporter, membrane spanning protein	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2 Gene: Xaut_2440: putative ABC transporter, membrane spanning protein	putative ABC transporter, membrane spanning protein
Atu4690	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu4690: putative ABC transporter, ATPase protein	Azorhizobium caulinodans ORS 571 Gene: AZC_2618: putative ABC transporter, ATPase protein	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234 Gene: NGR_b22340: putative ABC transporter, ATPase protein	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2 Gene: Xaut_2441: putative ABC transporter, ATPase protein	putative ABC transporter, ATPase protein
COG1063	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu4691: Threonine dehydrogenase and related Zn-dependent dehydrogenases	Azorhizobium caulinodans ORS 571 Gene: AZC_2619: Threonine dehydrogenase and related Zn-dependent dehydrogenases	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	* Rhizobium etli CFN 42 Site: position = -98 score = 6.81486 sequence = ATATGTTATCGATAACATAA Gene: RHE_PC00143: Threonine dehydrogenase and related Zn-dependent dehydrogenases	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -68 score = 6.81486 sequence = ATATGTTATCGATAACATAA Gene: pRL100390: Threonine dehydrogenase and related Zn-dependent dehydrogenases	* Rhizobium sp. NGR234 Site: position = -21 score = 6.69799 sequence = TTATGTTATCGATAACATTC Gene: NGR_b22260: Threonine dehydrogenase and related Zn-dependent dehydrogenases	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMa0510: Threonine dehydrogenase and related Zn-dependent dehydrogenases	Xanthobacter autotrophicus Py2	Threonine dehydrogenase and related Zn-dependent dehydrogenases
idnK	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_PC00145: Gluconokinase (EC 2.7.1.12)	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL100392: Gluconokinase (EC 2.7.1.12)	Rhizobium sp. NGR234 Gene: NGR_b22280: Gluconokinase (EC 2.7.1.12)	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMa0514: Gluconokinase (EC 2.7.1.12)	Xanthobacter autotrophicus Py2	Gluconokinase (EC 2.7.1.12)
gnd	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu4085: 6-phosphogluconate dehydrogenase EC=1.1.1.44	Azorhizobium caulinodans ORS 571 Gene: AZC_2610: 6-phosphogluconate dehydrogenase EC=1.1.1.44	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_PC00146: 6-phosphogluconate dehydrogenase EC=1.1.1.44	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL100393: 6-phosphogluconate dehydrogenase EC=1.1.1.44	Rhizobium sp. NGR234 Gene: NGR_b22290: 6-phosphogluconate dehydrogenase EC=1.1.1.44	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMa0516: 6-phosphogluconate dehydrogenase EC=1.1.1.44	Xanthobacter autotrophicus Py2 Gene: Xaut_2433: 6-phosphogluconate dehydrogenase EC=1.1.1.44	6-phosphogluconate dehydrogenase EC=1.1.1.44
SSF54909	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -70 score = 5.70868 sequence = GCATGTTATCGGTATCATTG Site: position = -232 score = 6.36887 sequence = AAATGTTCTCGATAACATTT Gene: Atu4686: Dimeric alpha-beta barrel	Azorhizobium caulinodans ORS 571 Gene: AZC_2612: Dimeric alpha-beta barrel	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42	Rhizobium leguminosarum bv. viciae 3841	Rhizobium sp. NGR234 Gene: NGR_b22300: Dimeric alpha-beta barrel	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMa0518: Dimeric alpha-beta barrel	Xanthobacter autotrophicus Py2 Gene: Xaut_2435: Dimeric alpha-beta barrel	Dimeric alpha-beta barrel
idnR	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu4685: Predicted transcriptional regulator of L-idonate utilization, LacI family	Azorhizobium caulinodans ORS 571 Gene: AZC_2611: Predicted transcriptional regulator of L-idonate utilization, LacI family	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	* Bradyrhizobium sp. BTAi1 Site: position = -114 score = 5.65215 sequence = GATTGTTATCGATATCACTG Gene: BBta_0778: Predicted transcriptional regulator of L-idonate utilization, LacI family	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	* Rhizobium etli CFN 42 Site: position = -226 score = 6.10209 sequence = ATTTGTTATCGATATCATCC Site: position = -131 score = 4.85223 sequence = CGATGATAGCGATAACTTTA Gene: RHE_PC00141: Predicted transcriptional regulator of L-idonate utilization, LacI family	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -268 score = 6.13644 sequence = AATTGTTATCGATATCATCT Site: position = -132 score = 4.85223 sequence = CGATGATAGCGATAACTTTA Gene: pRL100388: Predicted transcriptional regulator of L-idonate utilization, LacI family	2 Rhizobium sp. NGR234* Site: position = -67 score = 6.45754 sequence = AGATGTTATCGATAACAAAT Site: position = -88 score = 4.75077 sequence = GAAGGTTATCGTTAACTTAG Gene: NGR_b22380: Predicted transcriptional regulator of L-idonate utilization, LacI family Gene: NGR_b22310: Predicted transcriptional regulator of L-idonate utilization, LacI family	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2 Gene: Xaut_2434: Predicted transcriptional regulator of L-idonate utilization, LacI family	Predicted transcriptional regulator of L-idonate utilization, LacI family
idnD	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -177 score = 6.42733 sequence = ATATGTTACCGATAACATTC Gene: Atu4087: L-idonate 5-dehydrogenase (EC 1.1.1.264)	* Azorhizobium caulinodans ORS 571 Site: position = -62 score = 5.96004 sequence = GCATGTTATCGGTAACAAAA Gene: AZC_2613: L-idonate 5-dehydrogenase (EC 1.1.1.264)	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110 Gene: bll6831: L-idonate 5-dehydrogenase (EC 1.1.1.264)	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_PC00142: L-idonate 5-dehydrogenase (EC 1.1.1.264)	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL100389: L-idonate 5-dehydrogenase (EC 1.1.1.264)	Rhizobium sp. NGR234 Gene: NGR_b22250: L-idonate 5-dehydrogenase (EC 1.1.1.264)	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMa0512: L-idonate 5-dehydrogenase (EC 1.1.1.264)	* Xanthobacter autotrophicus Py2 Site: position = -81 score = 5.65488 sequence = TCATGATATCGGTAACATGA Gene: Xaut_2436: L-idonate 5-dehydrogenase (EC 1.1.1.264)	L-idonate 5-dehydrogenase (EC 1.1.1.264)

CRON 3.
gnl	Agrobacterium tumefaciens str. C58 (Cereon)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099 Gene: mll4328: Gluconolactonase (EC 3.1.1.17)	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	* Rhizobium etli CFN 42 Site: position = -37 score = 6.10209 sequence = GGATGATATCGATAACAAAT Site: position = -132 score = 4.85223 sequence = TAAAGTTATCGCTATCATCG Gene: RHE_PC00140: Gluconolactonase (EC 3.1.1.17)	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -177 score = 4.85223 sequence = TAAAGTTATCGCTATCATCG Site: position = -41 score = 6.13644 sequence = AGATGATATCGATAACAATT Gene: pRL100387: Gluconolactonase (EC 3.1.1.17)	Rhizobium sp. NGR234 Gene: NGR_b22240: Gluconolactonase (EC 3.1.1.17)	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Gluconolactonase (EC 3.1.1.17)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog IdnR - Rhizobiales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --