Regulon of IdnR in Agrobacterium tumefaciens str. C58 (Cereon)
| Regulator type: | Transcription factor |
| TF locus tag: | Atu4685 |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Idonate utilization |
| Effector: | L-idonate |
| Regulog: | IdnR - Rhizobiales |
| Statistics of regulated genes: | |
| - Genes | 10 |
| - Operons | 4 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhizobiales
- By TF family - LacI
- By effector - L-idonate
- By pathway - Idonate utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -177
Score: 6.4 Sequence: ATATGTTACCGATAACATTC
Locus tag: Atu4087
Name: idnD Funciton: L-idonate 5-dehydrogenase (EC 1.1.1.264) |
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idnD
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L-idonate 5-dehydrogenase (EC 1.1.1.264)
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Position: -245
Score: 5.7 Sequence: CAATGATACCGATAACATGC
Position: -83
Score: 6.4 Sequence: AAATGTTATCGAGAACATTT
Locus tag: Atu4687
Name: Atu4687 Funciton: putative ABC transporter, substrate-binding component
Locus tag: Atu4688
Name: Atu4688 Funciton: putative ABC transporter, membrane spanning protein
Locus tag: Atu4689
Name: Atu4689 Funciton: putative ABC transporter, membrane spanning protein
Locus tag: Atu4690
Name: Atu4690 Funciton: putative ABC transporter, ATPase protein
Locus tag: Atu4691
Name: COG1063 Funciton: Threonine dehydrogenase and related Zn-dependent dehydrogenases |
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Atu4687
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putative ABC transporter, substrate-binding component
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Atu4688
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putative ABC transporter, membrane spanning protein
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Atu4689
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putative ABC transporter, membrane spanning protein
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Atu4690
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putative ABC transporter, ATPase protein
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COG1063
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Threonine dehydrogenase and related Zn-dependent dehydrogenases
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Position: -58
Score: 6.4 Sequence: GAATGTTATCGGTAACATAT
Locus tag: Atu4086
Name: idnO Funciton: Gluconate 5-dehydrogenase (EC 1.1.1.69)
Locus tag: Atu4085
Name: gnd Funciton: 6-phosphogluconate dehydrogenase EC=1.1.1.44 |
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idnO
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Gluconate 5-dehydrogenase (EC 1.1.1.69)
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gnd
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6-phosphogluconate dehydrogenase EC=1.1.1.44
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Position: -232
Score: 6.4 Sequence: AAATGTTCTCGATAACATTT
Position: -70
Score: 5.7 Sequence: GCATGTTATCGGTATCATTG
Locus tag: Atu4686
Name: SSF54909 Funciton: Dimeric alpha-beta barrel
Locus tag: Atu4685
Name: idnR Funciton: Predicted transcriptional regulator of L-idonate utilization, LacI family |
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SSF54909
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Dimeric alpha-beta barrel
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idnR
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Predicted transcriptional regulator of L-idonate utilization, LacI family
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |