Regulon of LiuR in Rhizobium sp. NGR234
| Regulator type: | Transcription factor |
| TF locus tag: | NGR_c12400 |
| Regulator family: | MerR |
| Regulation mode: | repressor |
| Biological process: | Branched-chain amino acid degradation |
| Effector: | |
| Regulog: | LiuR - Rhizobiales |
| Statistics of regulated genes: | |
| - Genes | 19 |
| - Operons | 10 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LiuR
- By taxonomy - Rhizobiales
- By TF family - MerR
- By pathway - Branched-chain amino acid degradation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -47
Score: 6.1 Sequence: ATTGACGTTTACGCAAAC
Position: -41
Score: 4.6 Sequence: GTTTACGCAAACGTCAAA
Locus tag: NGR_c01400
Name: PF03060 Funciton: Dioxygenases related to 2-nitropropane dioxygenase |
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PF03060
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Dioxygenases related to 2-nitropropane dioxygenase
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Position: -135
Score: 6.3 Sequence: TTTGACGTTTACGCAAAC
Position: -129
Score: 4.6 Sequence: GTTTACGCAAACGTCAAA
Locus tag: NGR_c01690
Name: acdH Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Locus tag: NGR_c01680
Name: acdA Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Locus tag: NGR_c01670
Name: acdB Funciton: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
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acdH
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Acyl-CoA dehydrogenase (EC 1.3.99.3)
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acdA
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3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
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acdB
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Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
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Position: -187
Score: 6.4 Sequence: GTTGACGTTTACGTAAAA
Locus tag: NGR_c04900
Name: acdH2 Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Locus tag: NGR_c04910
Name: echH Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) |
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acdH2
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Acyl-CoA dehydrogenase (EC 1.3.99.3)
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echH
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Enoyl-CoA hydratase (EC 4.2.1.17)
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Position: -44
Score: 4.8 Sequence: ATTTACTTTGACGTCAAC
Position: -38
Score: 5.3 Sequence: TTTGACGTCAACGTCAAA
Locus tag: NGR_c07190
Name: SMc00041 Funciton: hypothetical protein |
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SMc00041
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hypothetical protein
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Position: -58
Score: 5.6 Sequence: TTTGACTTTTACGTCAAA
Locus tag: NGR_c12400
Name: liuR1 Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
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liuR1
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Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
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Position: -162
Score: 5.6 Sequence: TCTTACCTTTACGTAAGA
Locus tag: NGR_c31300
Name: mdh Funciton: Malate dehydrogenase (EC 1.1.1.37)
Locus tag: NGR_c31290
Name: sucC Funciton: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Locus tag: NGR_c31280
Name: sucD Funciton: Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
Locus tag: NGR_c31270
Name: sucA Funciton: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Locus tag: NGR_c31260
Name: sucB Funciton: Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) |
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mdh
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Malate dehydrogenase (EC 1.1.1.37)
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sucC
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Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
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sucD
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Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
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sucA
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2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
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sucB
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Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
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Position: -167
Score: 5.8 Sequence: TCTTACGTGTACGTAAAC
Locus tag: NGR_c26900
Name: etfB Funciton: Electron transfer flavoprotein, beta subunit
Locus tag: NGR_c26910
Name: etfA Funciton: Electron transfer flavoprotein, alpha subunit
Locus tag: NGR_c26920
Name: hbdA Funciton: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) |
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etfB
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Electron transfer flavoprotein, beta subunit
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etfA
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Electron transfer flavoprotein, alpha subunit
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hbdA
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3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
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Position: -118
Score: 5.2 Sequence: ATTTACCTTTACGTACGC
Locus tag: NGR_c08080
Name: PF09917 Funciton: Protein of unknown function, PF09917 |
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PF09917
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Protein of unknown function, PF09917
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Position: -147
Score: 6.1 Sequence: ATTGACGTTTACGTCAAA
Locus tag: NGR_c01180
Name: fadD Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
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fadD
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Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
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Position: -125
Score: 5.5 Sequence: ATTTACGTTTACGTTCAA
Position: -119
Score: 5 Sequence: GTTTACGTTCAAGTAAGA
Locus tag: NGR_c07940
Name: etfD Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
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etfD
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Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |