Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LiuR in Rhizobium sp. NGR234

Properties
Regulator type: Transcription factor
TF locus tag: NGR_c12400
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Regulog: LiuR - Rhizobiales
Statistics of regulated genes:
- Genes 19
- Operons 10
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 84 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -47
Score: 6.1
Sequence: ATTGACGTTTACGCAAAC
Position: -41
Score: 4.6
Sequence: GTTTACGCAAACGTCAAA
Locus tag: NGR_c01400
Name: PF03060
Funciton: Dioxygenases related to 2-nitropropane dioxygenase
NGR_c01400
PF03060
Dioxygenases related to 2-nitropropane dioxygenase
Position: -135
Score: 6.3
Sequence: TTTGACGTTTACGCAAAC
Position: -129
Score: 4.6
Sequence: GTTTACGCAAACGTCAAA
Locus tag: NGR_c01690
Name: acdH
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Locus tag: NGR_c01680
Name: acdA
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Locus tag: NGR_c01670
Name: acdB
Funciton: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
NGR_c01690
acdH
Acyl-CoA dehydrogenase (EC 1.3.99.3)
NGR_c01680
acdA
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
NGR_c01670
acdB
Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Position: -187
Score: 6.4
Sequence: GTTGACGTTTACGTAAAA
Locus tag: NGR_c04900
Name: acdH2
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Locus tag: NGR_c04910
Name: echH
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
NGR_c04900
acdH2
Acyl-CoA dehydrogenase (EC 1.3.99.3)
NGR_c04910
echH
Enoyl-CoA hydratase (EC 4.2.1.17)
Position: -44
Score: 4.8
Sequence: ATTTACTTTGACGTCAAC
Position: -38
Score: 5.3
Sequence: TTTGACGTCAACGTCAAA
Locus tag: NGR_c07190
Name: SMc00041
Funciton: hypothetical protein
NGR_c07190
SMc00041
hypothetical protein
Position: -58
Score: 5.6
Sequence: TTTGACTTTTACGTCAAA
Locus tag: NGR_c12400
Name: liuR1
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
NGR_c12400
liuR1
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Position: -162
Score: 5.6
Sequence: TCTTACCTTTACGTAAGA
Locus tag: NGR_c31300
Name: mdh
Funciton: Malate dehydrogenase (EC 1.1.1.37)
Locus tag: NGR_c31290
Name: sucC
Funciton: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Locus tag: NGR_c31280
Name: sucD
Funciton: Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
Locus tag: NGR_c31270
Name: sucA
Funciton: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Locus tag: NGR_c31260
Name: sucB
Funciton: Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
NGR_c31300
mdh
Malate dehydrogenase (EC 1.1.1.37)
NGR_c31290
sucC
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
NGR_c31280
sucD
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
NGR_c31270
sucA
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
NGR_c31260
sucB
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
Position: -167
Score: 5.8
Sequence: TCTTACGTGTACGTAAAC
Locus tag: NGR_c26900
Name: etfB
Funciton: Electron transfer flavoprotein, beta subunit
Locus tag: NGR_c26910
Name: etfA
Funciton: Electron transfer flavoprotein, alpha subunit
Locus tag: NGR_c26920
Name: hbdA
Funciton: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
NGR_c26900
etfB
Electron transfer flavoprotein, beta subunit
NGR_c26910
etfA
Electron transfer flavoprotein, alpha subunit
NGR_c26920
hbdA
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
Position: -118
Score: 5.2
Sequence: ATTTACCTTTACGTACGC
Locus tag: NGR_c08080
Name: PF09917
Funciton: Protein of unknown function, PF09917
NGR_c08080
PF09917
Protein of unknown function, PF09917
Position: -147
Score: 6.1
Sequence: ATTGACGTTTACGTCAAA
Locus tag: NGR_c01180
Name: fadD
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
NGR_c01180
fadD
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -125
Score: 5.5
Sequence: ATTTACGTTTACGTTCAA
Position: -119
Score: 5
Sequence: GTTTACGTTCAAGTAAGA
Locus tag: NGR_c07940
Name: etfD
Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
NGR_c07940
etfD
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
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