Profile of regulator LiuR in Rhizobiales
Properties
| Regulator family: |
MerR |
| Regulation mode: |
repressor |
| Biological process: |
Branched-chain amino acid degradation |
| Effector: |
|
| Regulog: |
LiuR - Rhizobiales |
Member of regulog collections
Transcription factor binding sites
|
Locus Tag |
Name |
Position |
Score |
Sequence |
|
Sinorhizobium meliloti 1021
|
|
SMc00977 |
acdH2 |
-73 |
5.9 |
GTTGACGTTCACGTAAAA |
|
SMc02229 |
acdH |
-135 |
6.3 |
TTTGACGTTTACGCAAAC |
|
SMc02229 |
acdH |
-129 |
4.6 |
GTTTACGCAAACGTCAAA |
|
SMc02479 |
mdh |
-164 |
6 |
TCTTACGTTTACGTAAGA |
|
SMc01260 |
liuR1 |
-58 |
5.6 |
TTTGACTTTTACGTCAAA |
|
SMc02377 |
etfD |
-163 |
5.3 |
GTTTACGTTTACGTTCAG |
|
SMc02377 |
etfD |
-157 |
4.6 |
GTTTACGTTCAGGTAACA |
|
SMc02162 |
fadD |
-147 |
6.1 |
GTTGACGTTTACGTCAAA |
|
SMc02150 |
PF03060 |
-45 |
5.4 |
TTTGACGTTTACGAGAAC |
|
SMc02150 |
PF03060 |
-39 |
4.7 |
GTTTACGAGAACGTCAAA |
|
SMc00041 |
SMc00041 |
-44 |
5 |
ATTTACCTTGACGTTAAC |
|
SMc00041 |
SMc00041 |
-38 |
5.4 |
CTTGACGTTAACGTCAAA |
|
SMc02391 |
PF09917 |
-148 |
5.2 |
ATTTACCTTTACGTACGC |
|
SMc00729 |
etfB |
-187 |
5.7 |
TTTTACCTGTACGTAAAC |
|
Rhizobium sp. NGR234
|
|
NGR_c04900 |
acdH2 |
-187 |
6.4 |
GTTGACGTTTACGTAAAA |
|
NGR_c01690 |
acdH |
-135 |
6.3 |
TTTGACGTTTACGCAAAC |
|
NGR_c01690 |
acdH |
-129 |
4.6 |
GTTTACGCAAACGTCAAA |
|
NGR_c31300 |
mdh |
-162 |
5.6 |
TCTTACCTTTACGTAAGA |
|
NGR_c12400 |
liuR1 |
-58 |
5.6 |
TTTGACTTTTACGTCAAA |
|
NGR_c07940 |
etfD |
-125 |
5.5 |
ATTTACGTTTACGTTCAA |
|
NGR_c07940 |
etfD |
-119 |
5 |
GTTTACGTTCAAGTAAGA |
|
NGR_c01180 |
fadD |
-147 |
6.1 |
ATTGACGTTTACGTCAAA |
|
NGR_c07190 |
SMc00041 |
-44 |
4.8 |
ATTTACTTTGACGTCAAC |
|
NGR_c07190 |
SMc00041 |
-38 |
5.3 |
TTTGACGTCAACGTCAAA |
|
NGR_c01400 |
PF03060 |
-41 |
4.6 |
GTTTACGCAAACGTCAAA |
|
NGR_c08080 |
PF09917 |
-118 |
5.2 |
ATTTACCTTTACGTACGC |
|
NGR_c01400 |
PF03060 |
-47 |
6.1 |
ATTGACGTTTACGCAAAC |
|
NGR_c26900 |
etfB |
-167 |
5.8 |
TCTTACGTGTACGTAAAC |
|
Rhizobium leguminosarum bv. viciae 3841
|
|
RL0965 |
acdH2 |
-82 |
6.4 |
ATTGACGTTTACGTAAAA |
|
RL1479 |
PF09917 |
-61 |
4.9 |
ATTTACCTTTACGTTCGC |
|
RL0591 |
acdH |
-87 |
6.3 |
TTTGACGTTTACGCAAAC |
|
RL4439 |
mdh |
-159 |
5.8 |
TATTACGTTTACGTAAGA |
|
RL2550 |
liuR1 |
-53 |
5.2 |
ATTGACTATTACGTAAAA |
|
RL1457 |
etfD |
-164 |
5.6 |
ATTGACGTTGACGTAAGC |
|
RL0505 |
fadD |
-159 |
5.9 |
GTTGACGTTTACGTTAAG |
|
RL4319 |
etfB |
-180 |
5.7 |
ATTGACGTGAACGTAAAC |
|
RL1312 |
SMc00041 |
-34 |
5.7 |
GTTGACGTTAACGTCAAA |
|
RL0537 |
PF03060 |
-37 |
5.8 |
ATTGACGTTTTCGTAAAC |
|
RL1312 |
SMc00041 |
-40 |
4.9 |
ATTAACGTTGACGTTAAC |
|
Rhizobium etli CFN 42
|
|
RHE_CH00905 |
acdH2 |
-83 |
6.4 |
ATTGACGTTTACGTAAAA |
|
RHE_CH00557 |
acdH |
-87 |
6.1 |
TCTGACGTTTACGCAAAC |
|
RHE_CH03891 |
mdh |
-156 |
6 |
TCTTACGTTTACGTAAGA |
|
RHE_CH02217 |
liuR1 |
-53 |
5.2 |
ATTGACTATTACGTAAAA |
|
RHE_CH01308 |
etfD |
-158 |
5.9 |
ATTGACGTTAACGTAAGC |
|
RHE_CH00478 |
fadD |
-159 |
5.9 |
GTTGACGTTTACGTCAAG |
|
RHE_CH01182 |
SMc00041 |
-35 |
5.7 |
GTTGACGTTAACGTCAAA |
|
RHE_CH01182 |
SMc00041 |
-41 |
4.5 |
AATAACGTTGACGTTAAC |
|
RHE_CH00505 |
PF03060 |
-37 |
5.8 |
ATTGACGTTTTCGTAAAC |
|
RHE_CH03792 |
etfB |
-177 |
5.9 |
GTTGACGTATACGTAAAC |
|
Agrobacterium tumefaciens str. C58 (Cereon)
|
|
Atu0732 |
acdH2 |
-71 |
6.4 |
ATTGACGTTTACGTAAAA |
|
Atu1009 |
PF09917 |
-208 |
5.4 |
TTTTACGTGAACGTCAAA |
|
Atu0501 |
acdH |
-84 |
5.2 |
TTTGACGTTTACGCGCAC |
|
Atu0501 |
acdH |
-78 |
4.6 |
GTTTACGCGCACGTCAAA |
|
Atu2639 |
mdh |
-160 |
6 |
TCTTACGTTTACGTAAGA |
|
Atu1546 |
liuR1 |
-56 |
5 |
ATTGACTTTTACGTGAAG |
|
Atu1546 |
liuR1 |
-50 |
4.8 |
TTTTACGTGAAGGTCAAA |
|
Atu0994 |
etfD |
-231 |
5.2 |
TATTACGTGCACGTAAAA |
|
Atu0405 |
fadD |
-243 |
5.9 |
ATTGACGTTTACGTTAGA |
|
Atu0415 |
PF03060 |
-37 |
4.7 |
ACTTACGTGCGCGTAAAC |
|
Atu3595 |
etfB |
-160 |
5.6 |
ATTTACGTTAACGTCAAC |
|
Mesorhizobium sp. BNC1
|
|
Meso_0723 |
acdH2 |
-93 |
5.9 |
TTTGACCTTTACGTAAGC |
|
Meso_0023 |
acdH |
-77 |
5.2 |
TTTGACGTTTACGCGCAC |
|
Meso_3395 |
mdh |
-182 |
4.6 |
GCTTACCCTTACGTAAAT |
|
Meso_1259 |
liuR1 |
-63 |
5.2 |
ATTGACTTTTACGTAATC |
|
Mesorhizobium loti MAFF303099
|
|
mlr7452 |
acdH2 |
-109 |
6.5 |
TTTGACGTTTACGTAAAA |
|
mlr5624 |
acdH |
-115 |
6.1 |
ATTGACGTTTACGCAAAC |
|
mll4308 |
mdh |
-203 |
5.8 |
TTTGACGTTTACGTAAGT |
|
mll1317 |
liuR1 |
-127 |
5.3 |
ATTGACTTTTACGTAAAT |
|
mll7718 |
PF09917 |
-69 |
5.3 |
GCTTACGTTTGCGTAAGC |
|
mlr5623 |
liuR2 |
-154 |
5.6 |
ATTGACGTAAACGTAAAA |
|
Brucella melitensis 16M
|
|
BMEI1521 |
acdH2 |
-112 |
5.8 |
ATTGACGTTTACGTAATA |
|
BMEI0304 |
null |
-84 |
5.4 |
ATTTACCTTTACGTAAAT |
|
BMEI1315 |
PF09917 |
-148 |
5.5 |
GTTTACGTTTGCGTAAGC |
|
BMEI1315 |
PF09917 |
-154 |
5.2 |
GTTTACGTTTACGTTTGC |
|
BMEI1320 |
etfD |
-244 |
6 |
TTTGACGTTTACGTTAAG |
|
BMEII0495 |
acdH |
-193 |
6.1 |
TTTGACGTTTACGGAAAC |
|
BMEII0495 |
acdH |
-187 |
4.6 |
GTTTACGGAAACGTCAAA |
|
BMEI0137 |
mdh |
-179 |
6 |
TCTTACGTTTACGTAAGA |
|
BMEI0808 |
liuR1 |
-65 |
5.3 |
ATTGACTTTTACGTAAAT |
|
BMEII0460 |
PF03060 |
10 |
5.5 |
TATTACGTTTACGGAAAC |
|
BMEI0096 |
etfB |
-176 |
5.3 |
ATTGACGTGCACGTCAAC |
|
BMEI1320 |
etfD |
-238 |
5.3 |
GTTTACGTTAAGGTAAAA |
|
BMEI1371 |
SMc00041 |
37 |
5 |
TATTACGTAAACGTAAGA |
|
Bartonella quintana str. Toulouse
|
|
BQ13450 |
mdh |
-279 |
5.4 |
ATTTACCTTCACGTAAAC |
Export
|
Regulatory Sites
|
[ FASTA format ]
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