Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Profile of regulator LiuR in Rhizobiales

Properties
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Regulog: LiuR - Rhizobiales
Member of regulog collections
Transcription factor binding sites
Locus Tag Name Position Score Sequence
Sinorhizobium meliloti 1021
SMc00977 acdH2 -73 5.9 GTTGACGTTCACGTAAAA
SMc02229 acdH -135 6.3 TTTGACGTTTACGCAAAC
SMc02229 acdH -129 4.6 GTTTACGCAAACGTCAAA
SMc02479 mdh -164 6 TCTTACGTTTACGTAAGA
SMc01260 liuR1 -58 5.6 TTTGACTTTTACGTCAAA
SMc02377 etfD -163 5.3 GTTTACGTTTACGTTCAG
SMc02377 etfD -157 4.6 GTTTACGTTCAGGTAACA
SMc02162 fadD -147 6.1 GTTGACGTTTACGTCAAA
SMc02150 PF03060 -45 5.4 TTTGACGTTTACGAGAAC
SMc02150 PF03060 -39 4.7 GTTTACGAGAACGTCAAA
SMc00041 SMc00041 -44 5 ATTTACCTTGACGTTAAC
SMc00041 SMc00041 -38 5.4 CTTGACGTTAACGTCAAA
SMc02391 PF09917 -148 5.2 ATTTACCTTTACGTACGC
SMc00729 etfB -187 5.7 TTTTACCTGTACGTAAAC
Rhizobium sp. NGR234
NGR_c04900 acdH2 -187 6.4 GTTGACGTTTACGTAAAA
NGR_c01690 acdH -135 6.3 TTTGACGTTTACGCAAAC
NGR_c01690 acdH -129 4.6 GTTTACGCAAACGTCAAA
NGR_c31300 mdh -162 5.6 TCTTACCTTTACGTAAGA
NGR_c12400 liuR1 -58 5.6 TTTGACTTTTACGTCAAA
NGR_c07940 etfD -125 5.5 ATTTACGTTTACGTTCAA
NGR_c07940 etfD -119 5 GTTTACGTTCAAGTAAGA
NGR_c01180 fadD -147 6.1 ATTGACGTTTACGTCAAA
NGR_c07190 SMc00041 -44 4.8 ATTTACTTTGACGTCAAC
NGR_c07190 SMc00041 -38 5.3 TTTGACGTCAACGTCAAA
NGR_c01400 PF03060 -41 4.6 GTTTACGCAAACGTCAAA
NGR_c08080 PF09917 -118 5.2 ATTTACCTTTACGTACGC
NGR_c01400 PF03060 -47 6.1 ATTGACGTTTACGCAAAC
NGR_c26900 etfB -167 5.8 TCTTACGTGTACGTAAAC
Rhizobium leguminosarum bv. viciae 3841
RL0965 acdH2 -82 6.4 ATTGACGTTTACGTAAAA
RL1479 PF09917 -61 4.9 ATTTACCTTTACGTTCGC
RL0591 acdH -87 6.3 TTTGACGTTTACGCAAAC
RL4439 mdh -159 5.8 TATTACGTTTACGTAAGA
RL2550 liuR1 -53 5.2 ATTGACTATTACGTAAAA
RL1457 etfD -164 5.6 ATTGACGTTGACGTAAGC
RL0505 fadD -159 5.9 GTTGACGTTTACGTTAAG
RL4319 etfB -180 5.7 ATTGACGTGAACGTAAAC
RL1312 SMc00041 -34 5.7 GTTGACGTTAACGTCAAA
RL0537 PF03060 -37 5.8 ATTGACGTTTTCGTAAAC
RL1312 SMc00041 -40 4.9 ATTAACGTTGACGTTAAC
Rhizobium etli CFN 42
RHE_CH00905 acdH2 -83 6.4 ATTGACGTTTACGTAAAA
RHE_CH00557 acdH -87 6.1 TCTGACGTTTACGCAAAC
RHE_CH03891 mdh -156 6 TCTTACGTTTACGTAAGA
RHE_CH02217 liuR1 -53 5.2 ATTGACTATTACGTAAAA
RHE_CH01308 etfD -158 5.9 ATTGACGTTAACGTAAGC
RHE_CH00478 fadD -159 5.9 GTTGACGTTTACGTCAAG
RHE_CH01182 SMc00041 -35 5.7 GTTGACGTTAACGTCAAA
RHE_CH01182 SMc00041 -41 4.5 AATAACGTTGACGTTAAC
RHE_CH00505 PF03060 -37 5.8 ATTGACGTTTTCGTAAAC
RHE_CH03792 etfB -177 5.9 GTTGACGTATACGTAAAC
Agrobacterium tumefaciens str. C58 (Cereon)
Atu0732 acdH2 -71 6.4 ATTGACGTTTACGTAAAA
Atu1009 PF09917 -208 5.4 TTTTACGTGAACGTCAAA
Atu0501 acdH -84 5.2 TTTGACGTTTACGCGCAC
Atu0501 acdH -78 4.6 GTTTACGCGCACGTCAAA
Atu2639 mdh -160 6 TCTTACGTTTACGTAAGA
Atu1546 liuR1 -56 5 ATTGACTTTTACGTGAAG
Atu1546 liuR1 -50 4.8 TTTTACGTGAAGGTCAAA
Atu0994 etfD -231 5.2 TATTACGTGCACGTAAAA
Atu0405 fadD -243 5.9 ATTGACGTTTACGTTAGA
Atu0415 PF03060 -37 4.7 ACTTACGTGCGCGTAAAC
Atu3595 etfB -160 5.6 ATTTACGTTAACGTCAAC
Mesorhizobium sp. BNC1
Meso_0723 acdH2 -93 5.9 TTTGACCTTTACGTAAGC
Meso_0023 acdH -77 5.2 TTTGACGTTTACGCGCAC
Meso_3395 mdh -182 4.6 GCTTACCCTTACGTAAAT
Meso_1259 liuR1 -63 5.2 ATTGACTTTTACGTAATC
Mesorhizobium loti MAFF303099
mlr7452 acdH2 -109 6.5 TTTGACGTTTACGTAAAA
mlr5624 acdH -115 6.1 ATTGACGTTTACGCAAAC
mll4308 mdh -203 5.8 TTTGACGTTTACGTAAGT
mll1317 liuR1 -127 5.3 ATTGACTTTTACGTAAAT
mll7718 PF09917 -69 5.3 GCTTACGTTTGCGTAAGC
mlr5623 liuR2 -154 5.6 ATTGACGTAAACGTAAAA
Brucella melitensis 16M
BMEI1521 acdH2 -112 5.8 ATTGACGTTTACGTAATA
BMEI0304 null -84 5.4 ATTTACCTTTACGTAAAT
BMEI1315 PF09917 -148 5.5 GTTTACGTTTGCGTAAGC
BMEI1315 PF09917 -154 5.2 GTTTACGTTTACGTTTGC
BMEI1320 etfD -244 6 TTTGACGTTTACGTTAAG
BMEII0495 acdH -193 6.1 TTTGACGTTTACGGAAAC
BMEII0495 acdH -187 4.6 GTTTACGGAAACGTCAAA
BMEI0137 mdh -179 6 TCTTACGTTTACGTAAGA
BMEI0808 liuR1 -65 5.3 ATTGACTTTTACGTAAAT
BMEII0460 PF03060 10 5.5 TATTACGTTTACGGAAAC
BMEI0096 etfB -176 5.3 ATTGACGTGCACGTCAAC
BMEI1320 etfD -238 5.3 GTTTACGTTAAGGTAAAA
BMEI1371 SMc00041 37 5 TATTACGTAAACGTAAGA
Bartonella quintana str. Toulouse
BQ13450 mdh -279 5.4 ATTTACCTTCACGTAAAC
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