Regulon of RhiR in Rhizobium sp. NGR234
| Regulator type: | Transcription factor |
| TF locus tag: | NGR_b17740 |
| Regulator family: | LacI |
| Regulation mode: | |
| Biological process: | Rhamnogalacturonides utilization |
| Effector: | Rhamogalacturonate oligosaccharides |
| Regulog: | RhiR - Rhizobiales |
| Statistics of regulated genes: | |
| - Genes | 7 |
| - Operons | 2 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhizobiales
- By TF family - LacI
- By effector - Rhamogalacturonate oligosaccharides
- By pathway - Rhamnogalacturonides utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -175
Score: 6 Sequence: GTATGAAAATGTTTTCATCA
Position: -32
Score: 5.9 Sequence: TTATGAAAAAGTTTTCATGA
Locus tag: NGR_b17670
Name: rhiL Funciton: Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein |
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rhiL
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Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein
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Position: -182
Score: 5.9 Sequence: TCATGAAAACTTTTTCATAA
Position: -39
Score: 6 Sequence: TGATGAAAACATTTTCATAC
Locus tag: NGR_b17680
Name: rhiX Funciton: hypothetical protein
Locus tag: NGR_b17690
Name: rhiN Funciton: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Locus tag: NGR_b17700
Name: pgl Funciton: Polygalacturonase (EC 3.2.1.15)
Locus tag: NGR_b17710
Name: rhiK Funciton: Putatuve rhamnogalacturonides ABC transporter, ATP-binding protein
Locus tag: NGR_b17720
Name: rhiG Funciton: Putatuve rhamnogalacturonides ABC transporter, permease component 2
Locus tag: NGR_b17730
Name: rhiF Funciton: Putatuve rhamnogalacturonides ABC transporter, permease component 1 |
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rhiX
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hypothetical protein
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rhiN
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Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
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pgl
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Polygalacturonase (EC 3.2.1.15)
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rhiK
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Putatuve rhamnogalacturonides ABC transporter, ATP-binding protein
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rhiG
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Putatuve rhamnogalacturonides ABC transporter, permease component 2
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rhiF
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Putatuve rhamnogalacturonides ABC transporter, permease component 1
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |