Regulog RhiR - Rhizobiales

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:
Biological process:	Rhamnogalacturonides utilization
Effector:	Rhamogalacturonate oligosaccharides
Phylum:	Proteobacteria/Alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 16 sites [see more]

Member of regulog collections

By taxonomy - Rhizobiales
By TF family - LacI
By effector - Rhamogalacturonate oligosaccharides
By pathway - Rhamnogalacturonides utilization

Statistics of regulated genes
Genome	Genes	Operons
Agrobacterium tumefaciens str. C58 (Cereon)	7	2
Azorhizobium caulinodans ORS 571
Bartonella quintana str. Toulouse
Bradyrhizobium japonicum USDA 110
Bradyrhizobium sp. BTAi1
Brucella melitensis 16M
Mesorhizobium loti MAFF303099
Mesorhizobium sp. BNC1
Nitrobacter winogradskyi Nb-255
Rhizobium etli CFN 42	7	2
Rhizobium leguminosarum bv. viciae 3841	7	2
Rhizobium sp. NGR234	7	2
Rhodopseudomonas palustris CGA009
Sinorhizobium meliloti 1021
Xanthobacter autotrophicus Py2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
rhiX	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -183 score = 6.22034 sequence = CAATGAAAACATTTTCACAA Site: position = -43 score = 6.24835 sequence = TCGTGAAAATAATTTCATTA Gene: Atu4562: hypothetical protein	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	* Rhizobium etli CFN 42 Site: position = -214 score = 6.19535 sequence = CCATGAAAACATTTTCATCA Site: position = -73 score = 5.93598 sequence = GAATGAAAAGATTTTCATGC Gene: RHE_PF00296: hypothetical protein	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -180 score = 6.45561 sequence = CCATGAAAACATTTTCATTA Site: position = -40 score = 6.53264 sequence = TAATGAAAATATTTTCATAG Gene: pRL120686: hypothetical protein	* Rhizobium sp. NGR234 Site: position = -182 score = 5.90161 sequence = TCATGAAAACTTTTTCATAA Site: position = -39 score = 5.99589 sequence = TGATGAAAACATTTTCATAC Gene: NGR_b17680: hypothetical protein	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	hypothetical protein
rhiN	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu4561: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_PF00295: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL120687: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)	Rhizobium sp. NGR234 Gene: NGR_b17690: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
pgl	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu4560: Polygalacturonase (EC 3.2.1.15)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_PF00294: Polygalacturonase (EC 3.2.1.15)	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL120688: Polygalacturonase (EC 3.2.1.15)	Rhizobium sp. NGR234 Gene: NGR_b17700: Polygalacturonase (EC 3.2.1.15)	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Polygalacturonase (EC 3.2.1.15)
rhiK	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu4559: Putatuve rhamnogalacturonides ABC transporter, ATP-binding protein	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_PF00293: Putatuve rhamnogalacturonides ABC transporter, ATP-binding protein	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL120689: Putatuve rhamnogalacturonides ABC transporter, ATP-binding protein	Rhizobium sp. NGR234 Gene: NGR_b17710: Putatuve rhamnogalacturonides ABC transporter, ATP-binding protein	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Putatuve rhamnogalacturonides ABC transporter, ATP-binding protein
rhiG	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu4558: Putatuve rhamnogalacturonides ABC transporter, permease component 2	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_PF00292: Putatuve rhamnogalacturonides ABC transporter, permease component 2	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL120690: Putatuve rhamnogalacturonides ABC transporter, permease component 2	Rhizobium sp. NGR234 Gene: NGR_b17720: Putatuve rhamnogalacturonides ABC transporter, permease component 2	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Putatuve rhamnogalacturonides ABC transporter, permease component 2
rhiF	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu4557: Putatuve rhamnogalacturonides ABC transporter, permease component 1	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_PF00291: Putatuve rhamnogalacturonides ABC transporter, permease component 1	Rhizobium leguminosarum bv. viciae 3841 Gene: pRL120691: Putatuve rhamnogalacturonides ABC transporter, permease component 1	Rhizobium sp. NGR234 Gene: NGR_b17730: Putatuve rhamnogalacturonides ABC transporter, permease component 1	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Putatuve rhamnogalacturonides ABC transporter, permease component 1

CRON 2.
rhiL	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -171 score = 6.24835 sequence = TAATGAAATTATTTTCACGA Site: position = -31 score = 6.22034 sequence = TTGTGAAAATGTTTTCATTG Gene: Atu4564: Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	* Rhizobium etli CFN 42 Site: position = -171 score = 5.93598 sequence = GCATGAAAATCTTTTCATTC Site: position = -30 score = 6.19535 sequence = TGATGAAAATGTTTTCATGG Gene: RHE_PF00297: Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -164 score = 6.53264 sequence = CTATGAAAATATTTTCATTA Site: position = -24 score = 6.45561 sequence = TAATGAAAATGTTTTCATGG Gene: pRL120685: Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein	* Rhizobium sp. NGR234 Site: position = -175 score = 5.99589 sequence = GTATGAAAATGTTTTCATCA Site: position = -32 score = 5.90161 sequence = TTATGAAAAAGTTTTCATGA Gene: NGR_b17670: Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021	Xanthobacter autotrophicus Py2	Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog RhiR - Rhizobiales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --