Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of RhiR in Agrobacterium tumefaciens str. C58 (Cereon)

Properties
Regulator type: Transcription factor
TF locus tag: Atu4556
Regulator family: LacI
Regulation mode:
Biological process: Rhamnogalacturonides utilization
Effector: Rhamogalacturonate oligosaccharides
Regulog: RhiR - Rhizobiales
Statistics of regulated genes:
- Genes 7
- Operons 2
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 16 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -171
Score: 6.2
Sequence: TAATGAAATTATTTTCACGA
Position: -31
Score: 6.2
Sequence: TTGTGAAAATGTTTTCATTG
Locus tag: Atu4564
Name: rhiL
Funciton: Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein
rhiL
Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein

Position: -183
Score: 6.2
Sequence: CAATGAAAACATTTTCACAA
Position: -43
Score: 6.2
Sequence: TCGTGAAAATAATTTCATTA
Locus tag: Atu4562
Name: rhiX
Funciton: hypothetical protein
Locus tag: Atu4561
Name: rhiN
Funciton: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Locus tag: Atu4560
Name: pgl
Funciton: Polygalacturonase (EC 3.2.1.15)
Locus tag: Atu4559
Name: rhiK
Funciton: Putatuve rhamnogalacturonides ABC transporter, ATP-binding protein
Locus tag: Atu4558
Name: rhiG
Funciton: Putatuve rhamnogalacturonides ABC transporter, permease component 2
Locus tag: Atu4557
Name: rhiF
Funciton: Putatuve rhamnogalacturonides ABC transporter, permease component 1
rhiX
hypothetical protein
rhiN
Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
pgl
Polygalacturonase (EC 3.2.1.15)
rhiK
Putatuve rhamnogalacturonides ABC transporter, ATP-binding protein
rhiG
Putatuve rhamnogalacturonides ABC transporter, permease component 2
rhiF
Putatuve rhamnogalacturonides ABC transporter, permease component 1
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD