Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing rhiN gene

Properties
Regulog: RhiR - Rhizobiales
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode:
Biological process: Rhamnogalacturonides utilization
Effector: Rhamogalacturonate oligosaccharides
Phylum: Proteobacteria/Alpha
Built upon 16 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Agrobacterium tumefaciens str. C58 (Cereon)
Position: -183
Score: 6.22034
Sequence: CAATGAAAACATTTTCACAA
Position: -43
Score: 6.24835
Sequence: TCGTGAAAATAATTTCATTA
Locus tag: Atu4562
Name: rhiX
Funciton: hypothetical protein
Locus tag: Atu4561
Name: rhiN
Funciton: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Locus tag: Atu4560
Name: pgl
Funciton: Polygalacturonase (EC 3.2.1.15)
Locus tag: Atu4559
Name: rhiK
Funciton: Putatuve rhamnogalacturonides ABC transporter, ATP-binding protein
Locus tag: Atu4558
Name: rhiG
Funciton: Putatuve rhamnogalacturonides ABC transporter, permease component 2
Locus tag: Atu4557
Name: rhiF
Funciton: Putatuve rhamnogalacturonides ABC transporter, permease component 1
rhiX-rhiN-pgl-rhiK-rhiG-rhiF -183 6.2 CAATGAAAACATTTTCACAA Atu4562
-43 6.2 TCGTGAAAATAATTTCATTA
Rhizobium etli CFN 42
Position: -214
Score: 6.19535
Sequence: CCATGAAAACATTTTCATCA
Position: -73
Score: 5.93598
Sequence: GAATGAAAAGATTTTCATGC
Locus tag: RHE_PF00296
Name: rhiX
Funciton: hypothetical protein
Locus tag: RHE_PF00295
Name: rhiN
Funciton: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Locus tag: RHE_PF00294
Name: pgl
Funciton: Polygalacturonase (EC 3.2.1.15)
Locus tag: RHE_PF00293
Name: rhiK
Funciton: Putatuve rhamnogalacturonides ABC transporter, ATP-binding protein
Locus tag: RHE_PF00292
Name: rhiG
Funciton: Putatuve rhamnogalacturonides ABC transporter, permease component 2
Locus tag: RHE_PF00291
Name: rhiF
Funciton: Putatuve rhamnogalacturonides ABC transporter, permease component 1
rhiX-rhiN-pgl-rhiK-rhiG-rhiF -214 6.2 CCATGAAAACATTTTCATCA RHE_PF00296
-73 5.9 GAATGAAAAGATTTTCATGC
Rhizobium leguminosarum bv. viciae 3841
Position: -180
Score: 6.45561
Sequence: CCATGAAAACATTTTCATTA
Position: -40
Score: 6.53264
Sequence: TAATGAAAATATTTTCATAG
Locus tag: pRL120686
Name: rhiX
Funciton: hypothetical protein
Locus tag: pRL120687
Name: rhiN
Funciton: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Locus tag: pRL120688
Name: pgl
Funciton: Polygalacturonase (EC 3.2.1.15)
Locus tag: pRL120689
Name: rhiK
Funciton: Putatuve rhamnogalacturonides ABC transporter, ATP-binding protein
Locus tag: pRL120690
Name: rhiG
Funciton: Putatuve rhamnogalacturonides ABC transporter, permease component 2
Locus tag: pRL120691
Name: rhiF
Funciton: Putatuve rhamnogalacturonides ABC transporter, permease component 1
rhiX-rhiN-pgl-rhiK-rhiG-rhiF -180 6.5 CCATGAAAACATTTTCATTA pRL120686
-40 6.5 TAATGAAAATATTTTCATAG
Rhizobium sp. NGR234
Position: -182
Score: 5.90161
Sequence: TCATGAAAACTTTTTCATAA
Position: -39
Score: 5.99589
Sequence: TGATGAAAACATTTTCATAC
Locus tag: NGR_b17680
Name: rhiX
Funciton: hypothetical protein
Locus tag: NGR_b17690
Name: rhiN
Funciton: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Locus tag: NGR_b17700
Name: pgl
Funciton: Polygalacturonase (EC 3.2.1.15)
Locus tag: NGR_b17710
Name: rhiK
Funciton: Putatuve rhamnogalacturonides ABC transporter, ATP-binding protein
Locus tag: NGR_b17720
Name: rhiG
Funciton: Putatuve rhamnogalacturonides ABC transporter, permease component 2
Locus tag: NGR_b17730
Name: rhiF
Funciton: Putatuve rhamnogalacturonides ABC transporter, permease component 1
rhiX-rhiN-pgl-rhiK-rhiG-rhiF -182 5.9 TCATGAAAACTTTTTCATAA NGR_b17680
-39 6 TGATGAAAACATTTTCATAC